* using log directory 'd:/Rcompile/CRANpkg/local/2.14/intamapInteractive.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'intamapInteractive/DESCRIPTION' ... OK * this is package 'intamapInteractive' version '1.1-1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'intamapInteractive' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in tests ... OK * checking tests ... OK Running 'anisotropyChoice.R' Comparing 'anisotropyChoice.Rout' to 'anisotropyChoice.Rout.save' ...4,6d3 < Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com < This is mgcv 1.7-17. For overview type 'help("mgcv-package")'. < deldir 0.0-19 8,11c5,9 < PLEASE NOTE: The components "delsgs" and "summary" of the < object returned by deldir() are now DATA FRAMES rather than < matrices (as they were prior to release 0.0-18). < See help("deldir"). --- > Attaching package: 'reshape' > > The following object(s) are masked from 'package:plyr': > > rename, round_any 13c11,20 < PLEASE NOTE: The process for determining duplicated points --- > Geospatial Data Abstraction Library extensions to R successfully loaded > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] > Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj > Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com > This is mgcv 1.7-9. For overview type 'help("mgcv-package")'. > deldir 0.0-15 > > Please note: The process for determining duplicated points 16c23 < spatstat 1.27-0 --- > spatstat 1.24-1 20a28,34 > Attaching package: 'spatstat' > > The following object(s) are masked from 'package:ggplot2': > > rescale > > 25c39 < as.Date, as.Date.numeric --- > as.Date 34,38c48,54 < Geospatial Data Abstraction Library extensions to R successfully loaded < Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.14/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.14/rgdal/proj --- > > Attaching package: 'akima' > > The following object(s) are masked from 'package:ggplot2': > > interp > 45a62 > There were 12 warnings (use warnings() to see them) 65c82 < [1] 1.197202 --- > [1] 1.196326 68c85 < [1] 87.14523 --- > [1] 87.29871 72c89 < [1,] 1 1.197202 87.14523 470 68531 --- > [1,] 1 1.196326 87.29871 470 68531 Running 'biasCorr.R' Comparing 'biasCorr.Rout' to 'biasCorr.Rout.save' ...4,6d3 < Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com < This is mgcv 1.7-17. For overview type 'help("mgcv-package")'. < deldir 0.0-19 8,11c5,9 < PLEASE NOTE: The components "delsgs" and "summary" of the < object returned by deldir() are now DATA FRAMES rather than < matrices (as they were prior to release 0.0-18). < See help("deldir"). --- > Attaching package: 'reshape' > > The following object(s) are masked from 'package:plyr': > > rename, round_any 13c11,20 < PLEASE NOTE: The process for determining duplicated points --- > Geospatial Data Abstraction Library extensions to R successfully loaded > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] > Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj > Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com > This is mgcv 1.7-9. For overview type 'help("mgcv-package")'. > deldir 0.0-15 > > Please note: The process for determining duplicated points 16c23 < spatstat 1.27-0 --- > spatstat 1.24-1 20a28,34 > Attaching package: 'spatstat' > > The following object(s) are masked from 'package:ggplot2': > > rescale > > 25c39 < as.Date, as.Date.numeric --- > as.Date 34,38c48,54 < Geospatial Data Abstraction Library extensions to R successfully loaded < Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.14/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.14/rgdal/proj --- > > Attaching package: 'akima' > > The following object(s) are masked from 'package:ggplot2': > > interp > 45a62 > There were 12 warnings (use warnings() to see them) 102,104c119,121 < x3 8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996583 0.06706801 < x4 5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430784 0.04975117 < x5 4 0.099305510 0.08948375 1.10976021 0.38266270 0.081768042 0.07854582 --- > x3 8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996582 0.06706801 > x4 5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430783 0.04975117 > x5 4 0.099305510 0.08948375 1.10976021 0.38266270 0.081768041 0.07854582 110c127 < x2 -5.8387562 0.02810256 --- > x2 -5.8387563 0.02810256 Running 'findLocalBias.R' Comparing 'findLocalBias.Rout' to 'findLocalBias.Rout.save' ...5,7d4 < Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com < This is mgcv 1.7-17. For overview type 'help("mgcv-package")'. < deldir 0.0-19 9,12c6,10 < PLEASE NOTE: The components "delsgs" and "summary" of the < object returned by deldir() are now DATA FRAMES rather than < matrices (as they were prior to release 0.0-18). < See help("deldir"). --- > Attaching package: 'reshape' > > The following object(s) are masked from 'package:plyr': > > rename, round_any 14c12,21 < PLEASE NOTE: The process for determining duplicated points --- > Geospatial Data Abstraction Library extensions to R successfully loaded > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] > Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj > Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com > This is mgcv 1.7-9. For overview type 'help("mgcv-package")'. > deldir 0.0-15 > > Please note: The process for determining duplicated points 17c24 < spatstat 1.27-0 --- > spatstat 1.24-1 21a29,35 > Attaching package: 'spatstat' > > The following object(s) are masked from 'package:ggplot2': > > rescale > > 26c40 < as.Date, as.Date.numeric --- > as.Date 35,39c49,55 < Geospatial Data Abstraction Library extensions to R successfully loaded < Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.14/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.14/rgdal/proj --- > > Attaching package: 'akima' > > The following object(s) are masked from 'package:ggplot2': > > interp > 46a63 > There were 12 warnings (use warnings() to see them) Running 'findRegionalBias.R' Comparing 'findRegionalBias.Rout' to 'findRegionalBias.Rout.save' ...5,7d4 < Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com < This is mgcv 1.7-17. For overview type 'help("mgcv-package")'. < deldir 0.0-19 9,12c6,10 < PLEASE NOTE: The components "delsgs" and "summary" of the < object returned by deldir() are now DATA FRAMES rather than < matrices (as they were prior to release 0.0-18). < See help("deldir"). --- > Attaching package: 'reshape' > > The following object(s) are masked from 'package:plyr': > > rename, round_any 14c12,21 < PLEASE NOTE: The process for determining duplicated points --- > Geospatial Data Abstraction Library extensions to R successfully loaded > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] > Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj > Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com > This is mgcv 1.7-9. For overview type 'help("mgcv-package")'. > deldir 0.0-15 > > Please note: The process for determining duplicated points 17c24 < spatstat 1.27-0 --- > spatstat 1.24-1 21a29,35 > Attaching package: 'spatstat' > > The following object(s) are masked from 'package:ggplot2': > > rescale > > 26c40 < as.Date, as.Date.numeric --- > as.Date 35,39c49,55 < Geospatial Data Abstraction Library extensions to R successfully loaded < Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.14/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.14/rgdal/proj --- > > Attaching package: 'akima' > > The following object(s) are masked from 'package:ggplot2': > > interp > 46a63 > There were 12 warnings (use warnings() to see them) 91,93c108,110 < x3 8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996583 0.06706801 < x4 5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430784 0.04975117 < x5 4 0.099305510 0.08948375 1.10976021 0.38266270 0.081768042 0.07854582 --- > x3 8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996582 0.06706801 > x4 5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430783 0.04975117 > x5 4 0.099305510 0.08948375 1.10976021 0.38266270 0.081768041 0.07854582 99c116 < x2 -5.8387562 0.02810256 --- > x2 -5.8387563 0.02810256 Running 'optimizingTest.R' Comparing 'optimizingTest.Rout' to 'optimizingTest.Rout.save' ...7,9d6 < Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com < This is mgcv 1.7-17. For overview type 'help("mgcv-package")'. < deldir 0.0-19 11,14c8,12 < PLEASE NOTE: The components "delsgs" and "summary" of the < object returned by deldir() are now DATA FRAMES rather than < matrices (as they were prior to release 0.0-18). < See help("deldir"). --- > Attaching package: 'reshape' > > The following object(s) are masked from 'package:plyr': > > rename, round_any 16c14,23 < PLEASE NOTE: The process for determining duplicated points --- > Geospatial Data Abstraction Library extensions to R successfully loaded > Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23 > Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal > Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] > Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj > Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com > This is mgcv 1.7-9. For overview type 'help("mgcv-package")'. > deldir 0.0-15 > > Please note: The process for determining duplicated points 19c26 < spatstat 1.27-0 --- > spatstat 1.24-1 23a31,37 > Attaching package: 'spatstat' > > The following object(s) are masked from 'package:ggplot2': > > rescale > > 28c42 < as.Date, as.Date.numeric --- > as.Date 37,41c51,57 < Geospatial Data Abstraction Library extensions to R successfully loaded < Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29 < Path to GDAL shared files: d:/RCompile/CRANpkg/lib/2.14/rgdal/gdal < Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470] < Path to PROJ.4 shared files: d:/RCompile/CRANpkg/lib/2.14/rgdal/proj --- > > Attaching package: 'akima' > > The following object(s) are masked from 'package:ggplot2': > > interp > 48a65 > There were 12 warnings (use warnings() to see them) 77c94 < [1] 116.2338 --- > [1] 116.2612 132c149 < [1] 116.3482 --- > [1] 116.3774 182,186c199,201 < [1] 115.4555 < Warning messages: < 1: 2 location(s) outside the target universe (as defined by 'object') have been found < These locations have been removed. 198 location(s) have been retained < 2: (Nearly) coinciding points have been removed. --- > [1] 115.505 > Warning message: > (Nearly) coinciding points have been removed. 208c223 < [1] 116.2338 --- > [1] 116.2612 212c227 < [1] 116.3482 --- > [1] 116.3774 219c234 < [1] 115.4555 --- > [1] 115.505 * checking PDF version of manual ... OK