* using log directory 'd:/Rcompile/CRANpkg/local/2.14/maxLik.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'maxLik/DESCRIPTION' ... OK
* this is package 'maxLik' version '1.1-2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'maxLik' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
logLikGrad: no visible binding for global variable 'lastFuncParam'
logLikGrad: no visible binding for global variable 'lastFuncGrad'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ... OK
  Running 'BFGSR.R'
  Comparing 'BFGSR.Rout' to 'BFGSR.Rout.save' ...28c28
< Function value: 1.183e+24 
---
> Function value: 8.104e+25 
31,33c31,33
< [1,] 5.9320e+09        0
< [2,] 2.9226e+10        0
< [3,] 1.0872e+12        0
---
> [1,]  6.2506e+12        0
> [2,]  6.2506e+12        0
> [3,] -1.7026e+12        0
47c47
< Function value: 2.4119e+21 
---
> Function value: 2.4071e+21 
50,52c50,52
< [1,]  8877158828        0
< [2,] 33431909639        0
< [3,] -2635180904        0
---
> [1,]  7684926721        0
> [2,] 33806418069        0
> [3,] -2319374069        0
66c66
< Number of iterations: 20 
---
> Number of iterations: 26 
72,73c72,73
< [1,] -1.0270e-07 2.0539e-07
< [2,] -9.0604e-08 1.8119e-07
---
> [1,] 1.8402e-07 -3.6804e-07
> [2,] 1.8402e-07 -3.6804e-07
95c95
< Number of iterations: 11 
---
> Number of iterations: 13 
101,102c101,102
< [1,]  0.49988 -0.22308
< [2,]  0.50009 -0.22318
---
> [1,]  0.49999 -0.22313
> [2,]  0.49999 -0.22313
108c108
< 5  outer iterations, barrier value 1.0137e-09 
---
> 5  outer iterations, barrier value 6.5361e-10 
  Running 'constraints.R'
  Comparing 'constraints.Rout' to 'constraints.Rout.save' ...353,355c353,355
< [1,]   0.5000     0.0256    19.5  <2e-16 ***
< [2,]  -1.0360     0.0581   -17.8  <2e-16 ***
< [3,]   1.0106     0.0584    17.3  <2e-16 ***
---
> [1,]   0.5000     0.0257    19.5  <2e-16 ***
> [2,]  -1.0360     0.0582   -17.8  <2e-16 ***
> [3,]   1.0106     0.0585    17.3  <2e-16 ***
373,374c373,374
< iter   5 value 3739.836050
< iter   6 value 3739.669310
---
> iter   5 value 3739.836051
> iter   6 value 3739.669311
376,395c376,398
< iter   8 value 3739.342554
< iter   9 value 3739.271535
< iter  10 value 3674.195391
< iter  11 value 3671.068131
< iter  12 value 3626.157704
< iter  13 value 3589.946385
< iter  14 value 3552.974009
< iter  15 value 3551.811720
< iter  16 value 3551.806145
< iter  17 value 3551.796622
< iter  18 value 3551.796375
< iter  19 value 3551.782439
< iter  20 value 3551.776228
< iter  21 value 3551.776073
< iter  22 value 3551.775690
< iter  23 value 3551.774437
< iter  24 value 3551.773439
< iter  24 value 3551.773426
< iter  24 value 3551.773425
< final  value 3551.773425 
---
> iter   8 value 3739.342555
> iter   9 value 3739.271536
> iter  10 value 3674.195892
> iter  11 value 3671.068754
> iter  12 value 3626.179862
> iter  13 value 3589.958026
> iter  14 value 3552.974654
> iter  15 value 3551.811769
> iter  16 value 3551.806189
> iter  17 value 3551.796655
> iter  18 value 3551.796407
> iter  19 value 3551.782460
> iter  20 value 3551.776241
> iter  21 value 3551.776085
> iter  22 value 3551.775694
> iter  23 value 3551.775004
> iter  24 value 3551.774150
> iter  25 value 3551.773955
> iter  26 value 3551.773847
> iter  27 value 3551.773493
> iter  27 value 3551.773487
> iter  27 value 3551.773479
> final  value 3551.773479 
400c403
< BFGS maximisation, 126 iterations
---
> BFGS maximisation, 136 iterations
407,408c410,411
< [2,]  -1.0360     0.0581   -17.8  <2e-16 ***
< [3,]   1.0111     0.0584    17.3  <2e-16 ***
---
> [2,]  -1.0357     0.0581   -17.8  <2e-16 ***
> [3,]   1.0112     0.0584    17.3  <2e-16 ***
414c417
< 1  outer iterations, barrier value -8.0817e-05 
---
> 1  outer iterations, barrier value -7.6798e-05 
487c490
< initial  value 3560.907807 
---
> initial  value 3560.907808 
490c493
< iter   4 value 3558.554875
---
> iter   4 value 3558.554874
510c513
< initial  value 3595.363567 
---
> initial  value 3595.363566 
522c525
< initial  value 3575.687740 
---
> initial  value 3575.687741 
890c893
< initial  value 3561.161194 
---
> initial  value 3561.161193 
900,902c903,905
< initial  value 3623.062833 
< iter   2 value 3595.991939
< iter   3 value 3595.709045
---
> initial  value 3623.062827 
> iter   2 value 3595.991937
> iter   3 value 3595.709044
911c914
< initial  value 3706.731798 
---
> initial  value 3706.731799 
922,925c925,928
< initial  value 3633.375253 
< iter   2 value 3610.546095
< iter   3 value 3610.527291
< iter   4 value 3608.619658
---
> initial  value 3633.375248 
> iter   2 value 3610.546094
> iter   3 value 3610.527290
> iter   4 value 3608.619657
933c936
< initial  value 3611.567446 
---
> initial  value 3611.567445 
936c939
< iter   4 value 3609.093783
---
> iter   4 value 3609.093787
944c947
< initial  value 3609.085219 
---
> initial  value 3609.085218 
990c993
< initial  value 3561.161194 
---
> initial  value 3561.161193 
1000,1002c1003,1005
< initial  value 3623.062833 
< iter   2 value 3595.991939
< iter   3 value 3595.709045
---
> initial  value 3623.062827 
> iter   2 value 3595.991937
> iter   3 value 3595.709044
1011c1014
< initial  value 3706.731798 
---
> initial  value 3706.731799 
1022,1025c1025,1028
< initial  value 3633.375253 
< iter   2 value 3610.546095
< iter   3 value 3610.527291
< iter   4 value 3608.619658
---
> initial  value 3633.375248 
> iter   2 value 3610.546094
> iter   3 value 3610.527290
> iter   4 value 3608.619657
1033c1036
< initial  value 3611.567446 
---
> initial  value 3611.567445 
1036c1039
< iter   4 value 3609.093783
---
> iter   4 value 3609.093787
1044c1047
< initial  value 3609.085219 
---
> initial  value 3609.085218 
1141c1144
< [1,]  -1.3034     0.0458   -28.5  <2e-16 ***
---
> [1,]  -1.3034     0.0458   -28.4  <2e-16 ***
1179c1182
< BFGS maximisation, 40 iterations
---
> BFGS maximisation, 38 iterations
1216c1219
< BFGS maximisation, 40 iterations
---
> BFGS maximisation, 38 iterations
  Running 'examples.R'
  Comparing 'examples.Rout' to 'examples.Rout.save' ...17c17
< [1] 3.3561e-11 6.1608e-11
---
> [1] -3.3317e-11 -5.6433e-11
20c20
< [1] -1.1102e-10 -1.1102e-10
---
> [1] 1.1102e-10 1.1102e-10
56,57c56,57
< [1,] 3.3561e-11 -1.1102e-10
< [2,] 6.1608e-11 -1.1102e-10
---
> [1,] -3.3317e-11 1.1102e-10
> [2,] -5.6433e-11 1.1102e-10
203c203
< [1] -5.6843e-08 -5.6843e-08
---
> [1] 0.0000e+00 5.6843e-08
207,208c207,208
< [1,] -1004.9     0.0
< [2,]     0.0 -2009.7
---
> [1,] -1004.8     0.0
> [2,]     0.0 -2009.8
252,253c252,253
< [1,] -1004.9     0.0
< [2,]     0.0 -2009.7
---
> [1,] -1004.8     0.0
> [2,]     0.0 -2009.8
256,257c256,257
< [1,] 0.031546 0.000000
< [2,] 0.000000 0.022307
---
> [1,] 0.031547 0.000000
> [2,] 0.000000 0.022306
259c259
< [1] 0.031546 0.022307
---
> [1] 0.031547 0.022306
276c276
< [1,] -999.99   NA
---
> [1,] -1000   NA
319c319
< [1,] -999.99   NA
---
> [1,] -1000   NA
324c324
< [1,] 0.031623
---
> [1,] 0.031622
327c327
< [1] 0.031623 0.000000
---
> [1] 0.031622 0.000000
346c346
< [1] 1.585e-05
---
> [1] 1.5834e-05
350c350
< [1,] -31.378
---
> [1,] -31.292
488c488
< [1,]     3.19 1.585e-05
---
> [1,]     3.19 1.5834e-05
684c684
< [1] -4.7751e-05
---
> [1] -4.7753e-05
824c824
< [1,]   2.1979 -4.7751e-05
---
> [1,]   2.1979 -4.7753e-05
1009c1009
< [1] 3.8675e-07
---
> [1] -5.4529e-07
1013c1013
< [1,] -22.78
---
> [1,] -22.759
1043,1044c1043,1044
<   [9,]  0.3749330
<  [10,]  0.4544985
---
>   [9,]  0.3749329
>  [10,]  0.4544984
1049c1049
<  [15,] -0.1279175
---
>  [15,] -0.1279176
1056c1056
<  [22,]  0.1609605
---
>  [22,]  0.1609604
1095,1096c1095,1096
<  [61,] -0.0034620
<  [62,] -0.0569845
---
>  [61,] -0.0034621
>  [62,] -0.0569846
1116,1117c1116,1117
<  [82,]  0.4721639
<  [83,]  0.2493489
---
>  [82,]  0.4721638
>  [83,]  0.2493488
1122,1123c1122,1123
<  [88,]  0.4639581
<  [89,] -0.4283272
---
>  [88,]  0.4639580
>  [89,] -0.4283273
1349c1349
< [1] -6.0751e-07
---
> [1] -2.4158e-07
1353c1353
< [1,] -21.6
---
> [1,] -21.618
1384c1384
< [1,]    2.151 -6.0751e-07
---
> [1,]    2.151 -2.4158e-07
1448c1448
< [1] 1.1102e-10 1.1102e-10
---
> [1] 1.1102e-10 0.0000e+00
1452,1453c1452,1453
< [1,]   -2  0.0000
< [2,]    0 -2.0002
---
> [1,] -2.0002  0.0000
> [2,]  0.0000 -2.0002
1485c1485
< [2,]        1 1.1102e-10
---
> [2,]        1 0.0000e+00
1499c1499
< [1] 6.6613e-09 3.1086e-09
---
> [1] 1.0880e-08 5.3291e-09
1503,1504c1503,1504
< [1,]   -2  0.0000
< [2,]    0 -2.0002
---
> [1,]   -2    0
> [2,]    0   -2
1520c1520
<       31 
---
>       26 
1533c1533
< Number of iterations: 31 
---
> Number of iterations: 26 
1539,1540c1539,1540
< [1,]        2 6.6613e-09
< [2,]        1 3.1086e-09
---
> [1,]        2 1.0880e-08
> [2,]        1 5.3291e-09
1827d1826
< -----Iteration 6 -----
1830c1829
< 6  iterations
---
> 5  iterations
1841c1840
< [1] 2.6645e-09
---
> [1] -5.2908e-07
1845c1844
< [1,] -17.266
---
> [1,] -17.275
1860c1859
< [1] 6
---
> [1] 5
1972c1971
< Newton-Raphson maximisation, 6 iterations
---
> Newton-Raphson maximisation, 5 iterations
1979c1978
< Newton-Raphson maximisation, 6 iterations
---
> Newton-Raphson maximisation, 5 iterations
1999c1998
< [1] 5.2458e-14
---
> [1] 5.2236e-14
2343c2342
< [1] 2.2649e-08
---
> [1] -3.4694e-08
2347c2346
< [1,] -28.813
---
> [1,] -28.791
2480c2479
< [1,] 0.034707
---
> [1,] 0.034733
  Running 'finalHessian.R'
  Comparing 'finalHessian.Rout' to 'finalHessian.Rout.save' ... OK
  Running 'fitExpDist.R'
  Comparing 'fitExpDist.Rout' to 'fitExpDist.Rout.save' ...55c55
< [1] -4.2261e-07
---
> [1] -3.8042e-07
59c59
< [1,] -22.329
---
> [1,] -22.332
187,188c187,188
< [1] "Component 3: Mean relative difference: 0.024974"  
< [2] "Component 4: Mean relative difference: 0.00015908"
---
> [1] "Component 3: Mean relative difference: 0.48766"   
> [2] "Component 4: Mean relative difference: 0.00047702"
195,196c195,196
< [1] "Component 3: Mean relative difference: 7.9742"    
< [2] "Component 4: Mean relative difference: 0.00036976"
---
> [1] "Component 3: Mean relative difference: 7.2779"    
> [2] "Component 4: Mean relative difference: 0.00021071"
233,234c233,234
< [1] "Component 2: Mean relative difference: 3.5848e-08"                             
< [2] "Component 3: Mean relative difference: 1.3306"                                 
---
> [1] "Component 2: Mean relative difference: 3.4951e-08"                             
> [2] "Component 3: Mean relative difference: 1.2976"                                 
236,237c236,237
< [4] "Component 4: Mean relative difference: 0.027613"                               
< [5] "Component 8: Mean relative difference: 5.0093e-08"                             
---
> [4] "Component 4: Mean relative difference: 0.027776"                               
> [5] "Component 8: Mean relative difference: 4.885e-08"                              
276,279c276,279
< [1] "Component 2: Mean relative difference: 2.972e-08" 
< [2] "Component 3: Mean relative difference: 1.4328"    
< [3] "Component 4: Mean relative difference: 0.00079491"
< [4] "Component 7: Mean relative difference: 4.1207e-08"
---
> [1] "Component 2: Mean relative difference: 2.8629e-08"
> [2] "Component 3: Mean relative difference: 1.3939"    
> [3] "Component 4: Mean relative difference: 0.00063593"
> [4] "Component 7: Mean relative difference: 3.9649e-08"
283c283
< [1] "Component 3: Mean relative difference: 0.0031934"
---
> [1] "Component 3: Mean relative difference: 0.000517"
290c290
< [1] "Component 3: Mean relative difference: 0.0037246" 
---
> [1] "Component 3: Mean relative difference: 0.0072872" 
332,334c332,334
< [1] "Component 2: Mean relative difference: 7.3494e-05"
< [2] "Component 3: Mean relative difference: 0.99988"   
< [3] "Component 4: Mean relative difference: 0.00079491"
---
> [1] "Component 2: Mean relative difference: 7.3495e-05"
> [2] "Component 3: Mean relative difference: 0.99989"   
> [3] "Component 4: Mean relative difference: 0.00047702"
347c347
< [2] "Component 4: Mean relative difference: 0.00057257"
---
> [2] "Component 4: Mean relative difference: 0.0004135" 
383,386c383,385
< [1] "Component 2: Mean relative difference: 1.0121e-05"
< [2] "Component 3: Mean relative difference: 0.99912"   
< [3] "Component 4: Mean relative difference: 0.00079491"
< [4] "Component 7: Mean relative difference: 1.4088e-05"
---
> [1] "Component 2: Mean relative difference: 1.0122e-05"
> [2] "Component 3: Mean relative difference: 0.99921"   
> [3] "Component 7: Mean relative difference: 1.409e-05" 
393,394c392,393
< [1] "Component 3: Mean relative difference: 6.1255e-06"
< [2] "Component 4: Mean relative difference: 0.00044576"
---
> [1] "Component 3: Mean relative difference: 6.7051e-06"
> [2] "Component 4: Mean relative difference: 0.00019046"
459c458
<     as.Date, as.Date.numeric
---
>     as.Date
542c541
< [1,] 4.4785
---
> [1,] 4.4778
560c559
< [1,] 4.475
---
> [1,] 4.4757
566c565
< [1,] 4.475
---
> [1,] 4.4778
582,583c581,582
< [1,] 0.043582
< [1] "Mean relative difference: 0.027613"
---
> [1,] 0.043568
> [1] "Mean relative difference: 0.027776"
606,607c605,606
< [1,] 0.043513
< [1] "Mean relative difference: 0.02843"
---
> [1,] 0.043526
> [1] "Mean relative difference: 0.028267"
614,615c613,614
< [1,] 0.043513
< [1] "Mean relative difference: 0.02843"
---
> [1,] 0.043568
> [1] "Mean relative difference: 0.027776"
  Running 'fitNormalDist.R'
  Comparing 'fitNormalDist.Rout' to 'fitNormalDist.Rout.save' ...5646c5646
< BFGS maximisation, 32 iterations
---
> BFGS maximisation, 30 iterations
5668c5668
< [5] "Component 9: Mean relative difference: 0.030303"                
---
> [5] "Component 9: Mean relative difference: 0.090909"                
6220,6226c6220
< 
< Attaching package: 'zoo'
< 
< The following object(s) are masked from 'package:base':
< 
<     as.Date, as.Date.numeric
< 
---
> Warning: locked binding of 'as.Date.numeric' will not be changed
  Running 'methods.R'
  Comparing 'methods.Rout' to 'methods.Rout.save' ... OK
  Running 'numericGradient.R'
  Comparing 'numericGradient.Rout' to 'numericGradient.Rout.save' ... OK
* checking PDF version of manual ... OK