* using log directory 'd:/Rcompile/CRANpkg/local/2.14/mboost.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'mboost/DESCRIPTION' ... OK * this is package 'mboost' version '2.1-2' * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'multicore' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'mboost' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE cvrisk: no visible binding for global variable 'mclapply' stabsel: no visible binding for global variable 'mclapply' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package(s) unavailable to check Rd xrefs: 'multicore' * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** checking differences from 'mboost-Ex_i386.Rout' to 'mboost-Ex.Rout.save' ... 254c254 < 1.82015201 -0.02260988 --- > 1.82015195 -0.02260988 260c260 < [1] 2.052033e-08 --- > [1] 7.571584e-08 263c263 < [1] 3.927625e-12 --- > [1] 2.815168e-13 411c411 < -0.1298897804 0.0003555854 --- > -0.1298897900 0.0003555856 429c429 < -0.1298897992 --- > -0.1298898010 591c591 < [1] 2.017941e-12 --- > [1] 2.006573e-11 1056c1056 < Degrees of freedom (for mstop = 24): 4.481727 --- > Degrees of freedom (for mstop = 24): 4.481737 1454,1455c1454,1455 < [ 1] ...................................... -- risk: 10338.67 < [ 41] ...................................... -- risk: 10159.83 --- > [ 1] ...................................... -- risk: 10338.66 > [ 41] ...................................... -- risk: 10159.82 1479c1479 < [101] ...................................... -- risk: 9976.165 --- > [101] ...................................... -- risk: 9976.16 1481c1481 < Final risk: 9948.544 --- > Final risk: 9948.539 1487,1520c1487,1520 < [ 151] ...................................... -- risk: 9843.543 < [ 191] ...................................... -- risk: 9745.987 < [ 231] ...................................... -- risk: 9654.787 < [ 271] ...................................... -- risk: 9569.22 < [ 311] ...................................... -- risk: 9488.736 < [ 351] ...................................... -- risk: 9412.891 < [ 391] ...................................... -- risk: 9341.306 < [ 431] ...................................... -- risk: 9273.654 < [ 471] ...................................... -- risk: 9209.644 < [ 511] ...................................... -- risk: 9149.016 < [ 551] ...................................... -- risk: 9091.536 < [ 591] ...................................... -- risk: 9036.992 < [ 631] ...................................... -- risk: 8985.191 < [ 671] ...................................... -- risk: 8935.954 < [ 711] ...................................... -- risk: 8889.12 < [ 751] ...................................... -- risk: 8844.539 < [ 791] ...................................... -- risk: 8802.074 < [ 831] ...................................... -- risk: 8761.595 < [ 871] ...................................... -- risk: 8722.985 < [ 911] ...................................... -- risk: 8686.134 < [ 951] ...................................... -- risk: 8650.941 < [ 991] ...................................... -- risk: 8617.309 < [1'031] ...................................... -- risk: 8585.151 < [1'071] ...................................... -- risk: 8554.384 < [1'111] ...................................... -- risk: 8524.931 < [1'151] ...................................... -- risk: 8496.719 < [1'191] ...................................... -- risk: 8469.681 < [1'231] ...................................... -- risk: 8443.754 < [1'271] ...................................... -- risk: 8418.879 < [1'311] ...................................... -- risk: 8395 < [1'351] ...................................... -- risk: 8372.064 < [1'391] ...................................... -- risk: 8350.022 < [1'431] ...................................... -- risk: 8328.828 < [1'471] ...................................... -- risk: 8308.44 --- > [ 151] ...................................... -- risk: 9843.537 > [ 191] ...................................... -- risk: 9745.981 > [ 231] ...................................... -- risk: 9654.78 > [ 271] ...................................... -- risk: 9569.212 > [ 311] ...................................... -- risk: 9488.728 > [ 351] ...................................... -- risk: 9412.882 > [ 391] ...................................... -- risk: 9341.297 > [ 431] ...................................... -- risk: 9273.645 > [ 471] ...................................... -- risk: 9209.634 > [ 511] ...................................... -- risk: 9149.006 > [ 551] ...................................... -- risk: 9091.526 > [ 591] ...................................... -- risk: 9036.982 > [ 631] ...................................... -- risk: 8985.181 > [ 671] ...................................... -- risk: 8935.944 > [ 711] ...................................... -- risk: 8889.11 > [ 751] ...................................... -- risk: 8844.529 > [ 791] ...................................... -- risk: 8802.064 > [ 831] ...................................... -- risk: 8761.585 > [ 871] ...................................... -- risk: 8722.975 > [ 911] ...................................... -- risk: 8686.124 > [ 951] ...................................... -- risk: 8650.931 > [ 991] ...................................... -- risk: 8617.299 > [1'031] ...................................... -- risk: 8585.141 > [1'071] ...................................... -- risk: 8554.374 > [1'111] ...................................... -- risk: 8524.921 > [1'151] ...................................... -- risk: 8496.709 > [1'191] ...................................... -- risk: 8469.672 > [1'231] ...................................... -- risk: 8443.745 > [1'271] ...................................... -- risk: 8418.87 > [1'311] ...................................... -- risk: 8394.99 > [1'351] ...................................... -- risk: 8372.054 > [1'391] ...................................... -- risk: 8350.013 > [1'431] ...................................... -- risk: 8328.82 > [1'471] ...................................... -- risk: 8308.431 1522c1522 < Final risk: 8289.296 --- > Final risk: 8289.288 1525c1525 < -36.995015 -35.596204 -34.085121 -32.349492 -30.277044 -27.732668 -24.322700 --- > -36.995014 -35.596207 -34.085126 -32.349499 -30.277051 -27.732673 -24.322691 1527c1527 < -20.863436 -21.899785 -19.121790 -6.090486 2.438404 -4.941579 -7.667458 --- > -20.863408 -21.899798 -19.121835 -6.090471 2.438464 -4.941604 -7.667532 1529c1529 < 2.660098 16.107901 12.731691 6.129804 7.150931 15.682223 30.314956 --- > 2.660072 16.107960 12.731713 6.129780 7.150886 15.682172 30.314925 1531c1531 < 47.848845 52.733366 46.576832 --- > 47.848885 52.733403 46.576792 1564,1567c1564,1567 < [1] -0.02478712 -0.01925256 0.07735509 0.24268927 0.39127892 0.49333022 < [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925 < [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876605 < [19] 0.39836923 0.42301410 0.36842335 0.22804995 --- > [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025 > [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924 > [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648 > [19] 0.39836988 0.42301499 0.36842422 0.22805053 1571c1571 < 3.775258 --- > 3.775259 1586,1589c1586,1589 < [1] -0.02478712 -0.01925256 0.07735509 0.24268927 0.39127892 0.49333022 < [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925 < [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876605 < [19] 0.39836923 0.42301410 0.36842335 0.22804995 --- > [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025 > [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924 > [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648 > [19] 0.39836988 0.42301499 0.36842422 0.22805053 1593c1593 < 3.775258 --- > 3.775259 1611,1614c1611,1614 < [1] -0.02478712 -0.01925256 0.07735509 0.24268927 0.39127892 0.49333022 < [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925 < [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876605 < [19] 0.39836923 0.42301410 0.36842335 0.22804995 --- > [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025 > [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924 > [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648 > [19] 0.39836988 0.42301499 0.36842422 0.22805053 1618c1618 < 3.775258 --- > 3.775259 2225c2225 < 1093.549 --- > 1093.545 2705c2705 < 140.4454 --- > 140.4455 OK ** running examples for arch 'x64' ... OK ** checking differences from 'mboost-Ex_x64.Rout' to 'mboost-Ex.Rout.save' ... OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'birds_Biometrics.R' Comparing 'birds_Biometrics.Rout' to 'birds_Biometrics.Rout.save' ...148c148 < 0.501901964 -0.001984263 --- > 0.501901966 -0.001984263 181c181 < [ 161] ...................................... -- risk: 130.305 --- > [ 161] ...................................... -- risk: 130.3049 198c198 < 0.778022842 -0.002811598 --- > 0.778022823 -0.002811598 202c202 < 0.59371225 -0.01241289 --- > 0.59371220 -0.01241289 210c210 < -1.71264919 0.01108683 --- > -1.71264915 0.01108683 231c231 < [ 121] ...................................... -- risk: 460.4985 --- > [ 121] ...................................... -- risk: 460.4984 234,236c234,236 < [ 241] ...................................... -- risk: 456.1802 < [ 281] ...................................... -- risk: 455.1545 < [ 321] ...................................... -- risk: 454.2507 --- > [ 241] ...................................... -- risk: 456.1801 > [ 281] ...................................... -- risk: 455.1544 > [ 321] ...................................... -- risk: 454.2506 254,265c254,265 < [ 1] ...................................... -- risk: 502.0303 < [ 41] ...................................... -- risk: 494.1493 < [ 81] ...................................... -- risk: 490.0277 < [ 121] ...................................... -- risk: 487.4496 < [ 161] ...................................... -- risk: 485.6646 < [ 201] ...................................... -- risk: 484.3156 < [ 241] ...................................... -- risk: 483.2211 < [ 281] ...................................... -- risk: 482.3221 < [ 321] ...................................... -- risk: 481.5232 < [ 361] ...................................... -- risk: 480.7767 < [ 401] ...................................... -- risk: 480.0901 < [ 441] ...................................... -- risk: 479.5037 --- > [ 1] ...................................... -- risk: 502.0305 > [ 41] ...................................... -- risk: 494.1495 > [ 81] ...................................... -- risk: 490.0279 > [ 121] ...................................... -- risk: 487.4498 > [ 161] ...................................... -- risk: 485.6648 > [ 201] ...................................... -- risk: 484.3158 > [ 241] ...................................... -- risk: 483.2213 > [ 281] ...................................... -- risk: 482.3224 > [ 321] ...................................... -- risk: 481.5234 > [ 361] ...................................... -- risk: 480.7769 > [ 401] ...................................... -- risk: 480.0903 > [ 441] ...................................... -- risk: 479.5039 267c267 < Final risk: 479.2248 --- > Final risk: 479.225 Running 'bugfixes.R' Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ...606,609c606,609 < Spam version 0.29-1 (2012-05-05) is loaded. < Type 'help( Spam)' or 'demo( spam)' for a short introduction < and overview of this package. < Help for individual functions is also obtained by adding the --- > Package 'spam' is loaded. Spam version 0.27-0 (2011-08-17). > Type demo( spam) for some demos, help( Spam) for an overview > of this package. > Help for individual functions is optained by adding the 621a622,625 > The following object(s) are masked from 'package:Matrix': > > norm > 624c628 < backsolve, forwardsolve --- > backsolve, forwardsolve, norm Running 'regtest-baselearner.R' Comparing 'regtest-baselearner.Rout' to 'regtest-baselearner.Rout.save' ...346,347c346,347 < [6] -0.220643444 0.154919020 -0.300950310 -0.873054990 -0.519028732 < [11] 0.320637178 -0.303918058 -0.610811536 -0.686367706 0.342235455 --- > [6] -0.220643444 0.154919020 -0.300950310 -0.873054989 -0.519028732 > [11] 0.320637178 -0.303918057 -0.610811536 -0.686367706 0.342235455 363c363 < [91] 0.429416562 -0.011876975 -0.009186625 -0.599968165 0.438317733 --- > [91] 0.429416562 -0.011876975 -0.009186625 -0.599968164 0.438317732 440c440 < [1] -0.9167356 --- > [1] -0.9167353 Running 'regtest-blackboost.R' Comparing 'regtest-blackboost.Rout' to 'regtest-blackboost.Rout.save' ...52,53d51 < Loaded gbm 1.6.3.2 < 55,69c53,67 < 1 74.4121 nan 0.1000 nan < 2 65.6474 nan 0.1000 nan < 3 58.7034 nan 0.1000 nan < 4 52.6088 nan 0.1000 nan < 5 47.5788 nan 0.1000 nan < 6 43.1559 nan 0.1000 nan < 7 39.3997 nan 0.1000 nan < 8 35.9511 nan 0.1000 nan < 9 33.1632 nan 0.1000 nan < 10 30.6850 nan 0.1000 nan < 100 6.8694 nan 0.1000 nan < 200 5.0890 nan 0.1000 nan < 300 3.9605 nan 0.1000 nan < 400 3.2681 nan 0.1000 nan < 500 2.7537 nan 0.1000 nan --- > 1 74.4121 -nan 0.1000 -nan > 2 65.6474 -nan 0.1000 -nan > 3 58.7034 -nan 0.1000 -nan > 4 52.6088 -nan 0.1000 -nan > 5 47.5788 -nan 0.1000 -nan > 6 43.1559 -nan 0.1000 -nan > 7 39.3997 -nan 0.1000 -nan > 8 35.9511 -nan 0.1000 -nan > 9 33.1632 -nan 0.1000 -nan > 10 30.6850 -nan 0.1000 -nan > 100 6.8694 -nan 0.1000 -nan > 200 5.0890 -nan 0.1000 -nan > 300 3.9605 -nan 0.1000 -nan > 400 3.2681 -nan 0.1000 -nan > 500 2.7537 -nan 0.1000 -nan Running 'regtest-family.R' Comparing 'regtest-family.Rout' to 'regtest-family.Rout.save' ... OK Running 'regtest-gamboost.R' Comparing 'regtest-gamboost.Rout' to 'regtest-gamboost.Rout.save' ...36c36 < [1] 6.625437 --- > [1] 6.625438 38c38 < Degrees of freedom (for mstop = 34): 5.056188 --- > Degrees of freedom (for mstop = 34): 5.056199 208c208 < [12,] 0.3426994 --- > [12,] 0.3426993 224,235c224,235 < [1,] 5.059375e-01 9.071417e-01 0.9992658 < [2,] 5.963551e-02 6.681175e-01 0.9969654 < [3,] 4.438008e-03 4.607472e-01 0.9941774 < [4,] 7.105703e-05 2.550525e-01 0.9897566 < [5,] 3.469722e-16 6.147551e-03 0.9623562 < [6,] 1.012072e-27 1.376472e-04 0.9351947 < [7,] 2.348574e-40 2.145802e-06 0.9063236 < [8,] 7.383737e-58 6.731226e-09 0.8677950 < [9,] 1.953648e-78 7.669664e-12 0.8245871 < [10,] 6.155754e-102 3.335810e-15 0.7778646 < [11,] 1.619543e-141 7.275178e-21 0.7050833 < [12,] 4.904272e-189 1.161265e-27 0.6266419 --- > [1,] 5.059374e-01 9.071417e-01 0.9992658 > [2,] 5.963542e-02 6.681175e-01 0.9969654 > [3,] 4.437993e-03 4.607471e-01 0.9941774 > [4,] 7.105658e-05 2.550524e-01 0.9897566 > [5,] 3.469611e-16 6.147540e-03 0.9623562 > [6,] 1.012013e-27 1.376467e-04 0.9351947 > [7,] 2.348370e-40 2.145790e-06 0.9063236 > [8,] 7.382807e-58 6.731171e-09 0.8677950 > [9,] 1.953311e-78 7.669578e-12 0.8245871 > [10,] 6.154361e-102 3.335760e-15 0.7778646 > [11,] 1.619033e-141 7.275027e-21 0.7050833 > [12,] 4.902193e-189 1.161233e-27 0.6266419 Running 'regtest-glmboost.R' Comparing 'regtest-glmboost.Rout' to 'regtest-glmboost.Rout.save' ... OK Running 'regtest-hatmatrix.R' Comparing 'regtest-hatmatrix.Rout' to 'regtest-hatmatrix.Rout.save' ... OK ** running tests for arch 'x64' OK Running 'birds_Biometrics.R' Comparing 'birds_Biometrics.Rout' to 'birds_Biometrics.Rout.save' ...181c181 < [ 161] ...................................... -- risk: 130.305 --- > [ 161] ...................................... -- risk: 130.3049 198c198 < 0.778022842 -0.002811598 --- > 0.778022823 -0.002811598 202c202 < 0.59371225 -0.01241289 --- > 0.59371220 -0.01241289 210c210 < -1.71264919 0.01108683 --- > -1.71264915 0.01108683 260c260 < [ 241] ...................................... -- risk: 483.2214 --- > [ 241] ...................................... -- risk: 483.2213 263c263 < [ 361] ...................................... -- risk: 480.777 --- > [ 361] ...................................... -- risk: 480.7769 Running 'bugfixes.R' Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ...606,609c606,609 < Spam version 0.29-1 (2012-05-05) is loaded. < Type 'help( Spam)' or 'demo( spam)' for a short introduction < and overview of this package. < Help for individual functions is also obtained by adding the --- > Package 'spam' is loaded. Spam version 0.27-0 (2011-08-17). > Type demo( spam) for some demos, help( Spam) for an overview > of this package. > Help for individual functions is optained by adding the 621a622,625 > The following object(s) are masked from 'package:Matrix': > > norm > 624c628 < backsolve, forwardsolve --- > backsolve, forwardsolve, norm Running 'regtest-baselearner.R' Comparing 'regtest-baselearner.Rout' to 'regtest-baselearner.Rout.save' ... OK Running 'regtest-blackboost.R' Comparing 'regtest-blackboost.Rout' to 'regtest-blackboost.Rout.save' ...52,53d51 < Loaded gbm 1.6.3.2 < 55,69c53,67 < 1 74.4121 nan 0.1000 nan < 2 65.6474 nan 0.1000 nan < 3 58.7034 nan 0.1000 nan < 4 52.6088 nan 0.1000 nan < 5 47.5788 nan 0.1000 nan < 6 43.1559 nan 0.1000 nan < 7 39.3997 nan 0.1000 nan < 8 35.9511 nan 0.1000 nan < 9 33.1632 nan 0.1000 nan < 10 30.6850 nan 0.1000 nan < 100 6.8694 nan 0.1000 nan < 200 5.0890 nan 0.1000 nan < 300 3.9605 nan 0.1000 nan < 400 3.2681 nan 0.1000 nan < 500 2.7537 nan 0.1000 nan --- > 1 74.4121 -nan 0.1000 -nan > 2 65.6474 -nan 0.1000 -nan > 3 58.7034 -nan 0.1000 -nan > 4 52.6088 -nan 0.1000 -nan > 5 47.5788 -nan 0.1000 -nan > 6 43.1559 -nan 0.1000 -nan > 7 39.3997 -nan 0.1000 -nan > 8 35.9511 -nan 0.1000 -nan > 9 33.1632 -nan 0.1000 -nan > 10 30.6850 -nan 0.1000 -nan > 100 6.8694 -nan 0.1000 -nan > 200 5.0890 -nan 0.1000 -nan > 300 3.9605 -nan 0.1000 -nan > 400 3.2681 -nan 0.1000 -nan > 500 2.7537 -nan 0.1000 -nan Running 'regtest-family.R' Comparing 'regtest-family.Rout' to 'regtest-family.Rout.save' ... OK Running 'regtest-gamboost.R' Comparing 'regtest-gamboost.Rout' to 'regtest-gamboost.Rout.save' ... OK Running 'regtest-glmboost.R' Comparing 'regtest-glmboost.Rout' to 'regtest-glmboost.Rout.save' ... OK Running 'regtest-hatmatrix.R' Comparing 'regtest-hatmatrix.Rout' to 'regtest-hatmatrix.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette PDFs ... OK * checking PDF version of manual ... OK