* using log directory 'd:/Rcompile/CRANpkg/local/2.14/mlmRev.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'mlmRev/DESCRIPTION' ... OK * this is package 'mlmRev' version '1.0-1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'mlmRev' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking examples ... OK * checking for unstated dependencies in tests ... OK * checking tests ... OK Running 'guImmun.R' Comparing 'guImmun.Rout' to 'guImmun.Rout.save' ...5,17d4 < Attaching package: 'Matrix' < < The following object(s) are masked from 'package:base': < < det < < < Attaching package: 'lme4' < < The following object(s) are masked from 'package:stats': < < AIC, BIC < 39,40c26,27 < mom25pY -0.1284 0.1543 -0.83 0.4054 < ord23 -0.1385 0.1609 -0.86 0.3893 --- > mom25pY -0.1284 0.1543 -0.83 0.4055 > ord23 -0.1385 0.1609 -0.86 0.3892 42,44c29,31 < ord7p 0.2893 0.2483 1.17 0.2440 < ethnN -0.1132 0.3125 -0.36 0.7173 < ethnS -0.0348 0.2322 -0.15 0.8810 --- > ord7p 0.2893 0.2483 1.16 0.2440 > ethnN -0.1131 0.3125 -0.36 0.7173 > ethnS -0.0347 0.2322 -0.15 0.8810 51,52c38,39 < ruralY -0.6494 0.1985 -3.27 0.0011 ** < pcInd81 -0.8574 0.3257 -2.63 0.0085 ** --- > ruralY -0.6493 0.1985 -3.27 0.0011 ** > pcInd81 -0.8572 0.3257 -2.63 0.0085 ** 94,99c81,86 < mom25pY -0.1360 0.1537 -0.88 0.37645 < ord23 -0.1374 0.1605 -0.86 0.39168 < ord46 0.1556 0.1977 0.79 0.43142 < ord7p 0.2404 0.2464 0.98 0.32909 < ethnN -0.2206 0.3095 -0.71 0.47605 < ethnS -0.0784 0.2311 -0.34 0.73443 --- > mom25pY -0.1359 0.1537 -0.88 0.37652 > ord23 -0.1375 0.1605 -0.86 0.39166 > ord46 0.1556 0.1977 0.79 0.43148 > ord7p 0.2404 0.2464 0.98 0.32913 > ethnN -0.2206 0.3095 -0.71 0.47600 > ethnS -0.0784 0.2311 -0.34 0.73438 101,102c88,89 < momEdS 0.3876 0.2766 1.40 0.16113 < momWorkY 0.2721 0.1283 2.12 0.03389 * --- > momEdS 0.3876 0.2766 1.40 0.16115 > momWorkY 0.2721 0.1283 2.12 0.03390 * 104c91 < pcInd81 -0.8354 0.3251 -2.57 0.01017 * --- > pcInd81 -0.8354 0.3251 -2.57 0.01018 * 118c105 < mom (Intercept) 1.2410 1.1140 --- > mom (Intercept) 1.2411 1.1140 124c111 < (Intercept) -0.6971 0.2687 -2.59 0.00948 ** --- > (Intercept) -0.6971 0.2687 -2.59 0.00947 ** 126,128c113,115 < mom25pY 0.0258 0.1163 0.22 0.82417 < ethnN -0.2172 0.3068 -0.71 0.47894 < ethnS -0.0812 0.2293 -0.35 0.72324 --- > mom25pY 0.0258 0.1163 0.22 0.82405 > ethnN -0.2172 0.3068 -0.71 0.47896 > ethnS -0.0812 0.2294 -0.35 0.72324 130c117 < momEdS 0.3266 0.2708 1.21 0.22783 --- > momEdS 0.3266 0.2708 1.21 0.22778 133c120 < pcInd81 -0.8367 0.3220 -2.60 0.00937 ** --- > pcInd81 -0.8366 0.3220 -2.60 0.00938 ** Running 'lmerTest.R' Comparing 'lmerTest.Rout' to 'lmerTest.Rout.save' ...6,18d5 < Attaching package: 'Matrix' < < The following object(s) are masked from 'package:base': < < det < < < Attaching package: 'lme4' < < The following object(s) are masked from 'package:stats': < < AIC, BIC < 178c165 < fm3 7 16519 16567 -8253 0.0 0 1 --- > fm3 7 16519 16567 -8253 0.0 0 <2e-16 219,220c206,207 < school (Intercept) 0.08583 0.293 < Residual 0.56253 0.750 --- > school (Intercept) 0.08583 0.2930 > Residual 0.56253 0.7500 304c291 < Subject (Intercept) 64.0346 8.0022 --- > Subject (Intercept) 64.0345 8.0022 361c348 < fm08 12 649.4 690.8 -312.7 0 0 <2e-16 --- > fm08 12 649.4 690.8 -312.7 1.68e-06 0 <2e-16 363c350 < + logLik(fm08, REML=FALSE), tol=1e-07)) --- > + logLik(fm08, REML=FALSE))) Running 'versions.R' * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette PDFs ... OK * checking PDF version of manual ... OK