* using log directory 'd:/Rcompile/CRANpkg/local/2.14/quantchem.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'quantchem/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'quantchem' version '0.12-1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... NOTE As from R 2.14.0 all packages need a namespace. One will be generated on installation, but it is better to handcraft a NAMESPACE file: R CMD build will produce a suitable starting point. * checking whether package 'quantchem' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plot.lmcal: no visible binding for global variable 'fit' summary.nlscal: missing arguments not allowed in calls to 'c' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'AIC.cal': 'AIC.cal' S3 methods shown with full name in documentation object 'anova.lmcal, anova.nlscal': 'anova.lmcal' 'anova.nlscal' S3 methods shown with full name in documentation object 'confint.cal': 'confint.cal' S3 methods shown with full name in documentation object 'plot.lmcal, plot.nlscal': 'plot.lmcal' 'plot.nlscal' S3 methods shown with full name in documentation object 'predict.lmcal, predict.nlscal': 'predict.lmcal' 'predict.nlscal' S3 methods shown with full name in documentation object 'residuals.cal': 'residuals.cal' S3 methods shown with full name in documentation object 'summary.lmcal, summary.nlscal': 'summary.lmcal' 'summary.nlscal' The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK