* using log directory 'd:/Rcompile/CRANpkg/local/2.14/rggobi.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'rggobi/DESCRIPTION' ... OK
* this is package 'rggobi' version '2.1.17'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'rggobi' can be installed ... OK
* checking installed package size ... OK
NB: this package is only installed for sub-architecture 'i386'
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
edges<-.GGobi: no visible global function definition for 'nodes'
edges<-.GGobi: no visible global function definition for 'edgeMatrix'
edges<-.GGobiData: no visible global function definition for 'nodes'
edges<-.GGobiData: no visible global function definition for
  'edgeMatrix'
ggobi_pcp: no visible binding for global variable 'CASEID'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 classes:
  'GGobiData'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object '"as.data.frame.GGobiData"':
  'as.data.frame.GGobiData'

S3 methods shown with full name in documentation object 'close.GGobi':
  'close.GGobi'

S3 methods shown with full name in documentation object 'close.GGobiDisplay':
  'close.GGobiDisplay'

S3 methods shown with full name in documentation object 'dataset.GGobiDisplay':
  'dataset.GGobiDisplay'

S3 methods shown with full name in documentation object 'dataset.numeric':
  'dataset.numeric'

S3 methods shown with full name in documentation object 'dim.GGobiData':
  'dim.GGobiData'

S3 methods shown with full name in documentation object '"dimnames<-.GGobiData"':
  'dimnames<-.GGobiData'

S3 methods shown with full name in documentation object 'dimnames.GGobiData':
  'dimnames.GGobiData'

S3 methods shown with full name in documentation object 'display.GGobiData':
  'display.GGobiData'

S3 methods shown with full name in documentation object 'displays.GGobi':
  'displays.GGobi'

S3 methods shown with full name in documentation object '"edges<-.GGobi"':
  'edges<-.GGobi'

S3 methods shown with full name in documentation object '"edges<-.GGobiData"':
  'edges<-.GGobiData'

S3 methods shown with full name in documentation object '"edges<-.GGobiDisplay"':
  'edges<-.GGobiDisplay'

S3 methods shown with full name in documentation object '"excluded<-.GGobiData"':
  'excluded<-.GGobiData'

S3 methods shown with full name in documentation object 'excluded.GGobiData':
  'excluded.GGobiData'

S3 methods shown with full name in documentation object '"[.GGobi"':
  '[.GGobi'

S3 methods shown with full name in documentation object '"[.GGobiData"':
  '[.GGobiData'

S3 methods shown with full name in documentation object 'ggobi.GGobiDisplay':
  'ggobi.GGobiDisplay'

S3 methods shown with full name in documentation object 'ggobi.default':
  'ggobi.default'

S3 methods shown with full name in documentation object '"glyph_colour<-.GGobiData"':
  'glyph_colour<-.GGobiData'

S3 methods shown with full name in documentation object 'glyph_colour.GGobiData':
  'glyph_colour.GGobiData'

S3 methods shown with full name in documentation object '"glyph_size<-.GGobiData"':
  'glyph_size<-.GGobiData'

S3 methods shown with full name in documentation object 'glyph_size.GGobiData':
  'glyph_size.GGobiData'

S3 methods shown with full name in documentation object '"glyph_type<-.GGobiData"':
  'glyph_type<-.GGobiData'

S3 methods shown with full name in documentation object 'glyph_type.GGobiData':
  'glyph_type.GGobiData'

S3 methods shown with full name in documentation object '"ids<-.GGobiData"':
  'ids<-.GGobiData'

S3 methods shown with full name in documentation object 'ids.GGobiData':
  'ids.GGobiData'

S3 methods shown with full name in documentation object 'length.GGobiDisplay':
  'length.GGobiDisplay'

S3 methods shown with full name in documentation object '"names<-.GGobiData"':
  'names<-.GGobiData'

S3 methods shown with full name in documentation object 'names.GGobi':
  'names.GGobi'

S3 methods shown with full name in documentation object 'names.GGobiData':
  'names.GGobiData'

S3 methods shown with full name in documentation object 'print.GGobi':
  'print.GGobi'

S3 methods shown with full name in documentation object 'print.GGobiData':
  'print.GGobiData'

S3 methods shown with full name in documentation object 'print.GGobiDisplay':
  'print.GGobiDisplay'

S3 methods shown with full name in documentation object 'selected.GGobiData':
  'selected.GGobiData'

S3 methods shown with full name in documentation object '"[<-.GGobi"':
  '[<-.GGobi'

S3 methods shown with full name in documentation object '"[<-.GGobiData"':
  '[<-.GGobiData'

S3 methods shown with full name in documentation object '"shadowed<-.GGobiData"':
  'shadowed<-.GGobiData'

S3 methods shown with full name in documentation object 'shadowed.GGobiData':
  'shadowed.GGobiData'

S3 methods shown with full name in documentation object 'summary.GGobi':
  'summary.GGobi'

S3 methods shown with full name in documentation object 'summary.GGobiData':
  'summary.GGobiData'

S3 methods shown with full name in documentation object '"variables<-.GGobiDisplay"':
  'variables<-.GGobiDisplay'

S3 methods shown with full name in documentation object 'variables.GGobiDisplay':
  'variables.GGobiDisplay'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'data(package=)' call not declared from: 'nlme'
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
  'd:/Rcompile/CRANpkg/local/2.14/rggobi.Rcheck/00check.log'
for details