* using log directory 'd:/Rcompile/CRANpkg/local/2.14/sp.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'sp/DESCRIPTION' ... OK * this is package 'sp' version '0.9-99' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'sp' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'base.R' Comparing 'base.Rout' to 'base.Rout.save' ... OK Running 'fail1.R' Comparing 'fail1.Rout' to 'fail1.Rout.save' ... OK Running 'grid.R' Comparing 'grid.Rout' to 'grid.Rout.save' ...28,43c28,35 < part.a part.b dist soil < Min. : 0.0000 Min. : 0.0000 Min. : 0.0000 Min. : 1.000 < 1st Qu.: 0.0000 1st Qu.: 0.0000 1st Qu.: 0.1193 1st Qu.: 1.000 < Median : 0.0000 Median : 1.0000 Median : 0.2715 Median : 1.000 < Mean : 0.3986 Mean : 0.6014 Mean : 0.2971 Mean : 1.578 < 3rd Qu.: 1.0000 3rd Qu.: 1.0000 3rd Qu.: 0.4402 3rd Qu.: 2.000 < Max. : 1.0000 Max. : 1.0000 Max. : 0.9926 Max. : 3.000 < NA's :5009.0000 NA's :5009.0000 NA's :5009.0000 NA's :5009.000 < ffreq < 1 : 779 < 2 :1335 < 3 : 989 < NA's:5009 < < < --- > part.a part.b dist soil ffreq > Min. :0.000 Min. :0.000 Min. :0.000 Min. :1.000 1 : 779 > 1st Qu.:0.000 1st Qu.:0.000 1st Qu.:0.119 1st Qu.:1.000 2 :1335 > Median :0.000 Median :1.000 Median :0.272 Median :1.000 3 : 989 > Mean :0.399 Mean :0.601 Mean :0.297 Mean :1.578 NA's:5009 > 3rd Qu.:1.000 3rd Qu.:1.000 3rd Qu.:0.440 3rd Qu.:2.000 > Max. :1.000 Max. :1.000 Max. :0.993 Max. :3.000 > NA's :5009 NA's :5009 NA's :5009 NA's :5009 146c138 < 1.00 2.75 4.50 4.75 6.50 9.00 1.00 --- > 1.00 2.75 4.50 4.75 6.50 9.00 1 Running 'pass1.R' Comparing 'pass1.Rout' to 'pass1.Rout.save' ...65c65 < NA's : 2.000 --- > NA's :2 226c226 < NA's : 2.000 NA's : 1 --- > NA's :2 NA's : 1 260c260 < NA's : 2.000 NA's : 1 --- > NA's :2 NA's : 1 Running 'point.in.polygon.R' Comparing 'point.in.polygon.Rout' to 'point.in.polygon.Rout.save' ... OK Running 'sel.R' Comparing 'sel.Rout' to 'sel.Rout.save' ... OK Running 'sp1.R' Comparing 'sp1.Rout' to 'sp1.Rout.save' ...79c79 < NA's : 2.000 --- > NA's :2 Running 'spDists.R' Comparing 'spDists.Rout' to 'spDists.Rout.save' ...15c15 < [1] 1.774598e-10 --- > [1] 0 18c18 < -9.095e-13 0.000e+00 0.000e+00 3.690e-16 0.000e+00 9.095e-13 --- > 0 0 0 0 0 0 22c22 < [1] 1.774598e-10 --- > [1] 0 25c25 < -9.095e-13 0.000e+00 0.000e+00 3.690e-16 0.000e+00 9.095e-13 --- > 0 0 0 0 0 0 Running 'spplot.R' Comparing 'spplot.Rout' to 'spplot.Rout.save' ... OK Running 'zerodist.R' Comparing 'zerodist.Rout' to 'zerodist.Rout.save' ...52c52 < NA's : 2.000 --- > NA's :2 87c87 < NA's : 2.000 --- > NA's :2 ** running tests for arch 'x64' OK Running 'base.R' Comparing 'base.Rout' to 'base.Rout.save' ... OK Running 'fail1.R' Comparing 'fail1.Rout' to 'fail1.Rout.save' ... OK Running 'grid.R' Comparing 'grid.Rout' to 'grid.Rout.save' ...28,43c28,35 < part.a part.b dist soil < Min. : 0.0000 Min. : 0.0000 Min. : 0.0000 Min. : 1.000 < 1st Qu.: 0.0000 1st Qu.: 0.0000 1st Qu.: 0.1193 1st Qu.: 1.000 < Median : 0.0000 Median : 1.0000 Median : 0.2715 Median : 1.000 < Mean : 0.3986 Mean : 0.6014 Mean : 0.2971 Mean : 1.578 < 3rd Qu.: 1.0000 3rd Qu.: 1.0000 3rd Qu.: 0.4402 3rd Qu.: 2.000 < Max. : 1.0000 Max. : 1.0000 Max. : 0.9926 Max. : 3.000 < NA's :5009.0000 NA's :5009.0000 NA's :5009.0000 NA's :5009.000 < ffreq < 1 : 779 < 2 :1335 < 3 : 989 < NA's:5009 < < < --- > part.a part.b dist soil ffreq > Min. :0.000 Min. :0.000 Min. :0.000 Min. :1.000 1 : 779 > 1st Qu.:0.000 1st Qu.:0.000 1st Qu.:0.119 1st Qu.:1.000 2 :1335 > Median :0.000 Median :1.000 Median :0.272 Median :1.000 3 : 989 > Mean :0.399 Mean :0.601 Mean :0.297 Mean :1.578 NA's:5009 > 3rd Qu.:1.000 3rd Qu.:1.000 3rd Qu.:0.440 3rd Qu.:2.000 > Max. :1.000 Max. :1.000 Max. :0.993 Max. :3.000 > NA's :5009 NA's :5009 NA's :5009 NA's :5009 146c138 < 1.00 2.75 4.50 4.75 6.50 9.00 1.00 --- > 1.00 2.75 4.50 4.75 6.50 9.00 1 Running 'pass1.R' Comparing 'pass1.Rout' to 'pass1.Rout.save' ...65c65 < NA's : 2.000 --- > NA's :2 226c226 < NA's : 2.000 NA's : 1 --- > NA's :2 NA's : 1 260c260 < NA's : 2.000 NA's : 1 --- > NA's :2 NA's : 1 Running 'point.in.polygon.R' Comparing 'point.in.polygon.Rout' to 'point.in.polygon.Rout.save' ... OK Running 'sel.R' Comparing 'sel.Rout' to 'sel.Rout.save' ... OK Running 'sp1.R' Comparing 'sp1.Rout' to 'sp1.Rout.save' ...79c79 < NA's : 2.000 --- > NA's :2 Running 'spDists.R' Comparing 'spDists.Rout' to 'spDists.Rout.save' ... OK Running 'spplot.R' Comparing 'spplot.Rout' to 'spplot.Rout.save' ... OK Running 'zerodist.R' Comparing 'zerodist.Rout' to 'zerodist.Rout.save' ...52c52 < NA's : 2.000 --- > NA's :2 87c87 < NA's : 2.000 --- > NA's :2 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette PDFs ... OK * checking PDF version of manual ... OK