* using log directory 'd:/Rcompile/CRANpkg/local/2.15/BiodiversityR.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'BiodiversityR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BiodiversityR' version '1.6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'BiodiversityR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
multiconstrained: warning in assign("newenvdata", data1, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
multiconstrained: warning in assign("newcommunity", comm1, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
nested.anova.dbrda: warning in assign("data1", data, env = .GlobalEnv):
  partial argument match of 'env' to 'envir'
nested.anova.dbrda: warning in capscale(formula1, data = data1, dist =
  method, add = add): partial argument match of 'dist' to 'distance'
nested.anova.dbrda: warning in assign("testenv", data2, env =
  parent.frame()): partial argument match of 'env' to 'envir'
nested.anova.dbrda: warning in capscale(formula1, data = testenv, dist
  = method, add = add): partial argument match of 'dist' to 'distance'
nested.npmanova: warning in assign("data1", data, env = .GlobalEnv):
  partial argument match of 'env' to 'envir'
nested.npmanova: warning in assign("testenv", data2, env =
  parent.frame()): partial argument match of 'env' to 'envir'
residualssurface: warning in filled.contour(interp(xpos, ypos, fitted,
  duplicate = "mean"), color = terrain.colors): partial argument match
  of 'color' to 'color.palette'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
  'd:/Rcompile/CRANpkg/local/2.15/BiodiversityR.Rcheck/00check.log'
for details.