* using log directory 'd:/Rcompile/CRANpkg/local/2.15/Bolstad2.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'Bolstad2/DESCRIPTION' ... OK * this is package 'Bolstad2' version '1.0-27' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'Bolstad2' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE BayesCPH : calcMatchedCurvatureNormLike: warning in matrix(0, nr = nObs, nc = nObs): partial argument match of 'nr' to 'nrow' BayesCPH : calcMatchedCurvatureNormLike: warning in matrix(0, nr = nObs, nc = nObs): partial argument match of 'nc' to 'ncol' BayesCPH : normApproxPosterior: warning in matrix(0, nc = nParameters, nr = nParameters): partial argument match of 'nr' to 'nrow' BayesCPH : normApproxPosterior: warning in matrix(0, nc = nParameters, nr = nParameters): partial argument match of 'nc' to 'ncol' BayesCPH: warning in matrix(rt(steps * nParameters, df = 4), nc = nParameters): partial argument match of 'nc' to 'ncol' BayesCPH: warning in matrix(rep(postMean, rep(steps, nParameters)), nc = nParameters): partial argument match of 'nc' to 'ncol' BayesLogistic : calcMatchedCurvatureNormLike: warning in matrix(0, nr = nObs, nc = nObs): partial argument match of 'nr' to 'nrow' BayesLogistic : calcMatchedCurvatureNormLike: warning in matrix(0, nr = nObs, nc = nObs): partial argument match of 'nc' to 'ncol' BayesLogistic : normApproxPosterior: warning in matrix(0, nc = nParameters, nr = nParameters): partial argument match of 'nr' to 'nrow' BayesLogistic : normApproxPosterior: warning in matrix(0, nc = nParameters, nr = nParameters): partial argument match of 'nc' to 'ncol' BayesLogistic: warning in matrix(rt(steps * nParameters, df = 4), nc = nParameters): partial argument match of 'nc' to 'ncol' BayesLogistic: warning in matrix(rep(postMean, rep(steps, nParameters)), nc = nParameters): partial argument match of 'nc' to 'ncol' BayesPois : calcMatchedCurvatureNormLike: warning in matrix(0, nr = nObs, nc = nObs): partial argument match of 'nr' to 'nrow' BayesPois : calcMatchedCurvatureNormLike: warning in matrix(0, nr = nObs, nc = nObs): partial argument match of 'nc' to 'ncol' BayesPois : normApproxPosterior: warning in matrix(0, nc = nParameters, nr = nParameters): partial argument match of 'nr' to 'nrow' BayesPois : normApproxPosterior: warning in matrix(0, nc = nParameters, nr = nParameters): partial argument match of 'nc' to 'ncol' BayesPois: warning in matrix(rt(steps * nParameters, df = 4), nc = nParameters): partial argument match of 'nc' to 'ncol' BayesPois: warning in matrix(rep(postMean, rep(steps, nParameters)), nc = nParameters): partial argument match of 'nc' to 'ncol' bivnormMH: warning in matrix(0, nc = 2, nr = steps): partial argument match of 'nr' to 'nrow' bivnormMH: warning in matrix(0, nc = 2, nr = steps): partial argument match of 'nc' to 'ncol' bivnormMH: warning in matrix(rnorm(2 * steps, rep(0, 2 * steps), rep(sigma, steps)), nc = 2): partial argument match of 'nc' to 'ncol' bivnormMH: warning in matrix(0, nc = 2, nr = twosteps): partial argument match of 'nr' to 'nrow' bivnormMH: warning in matrix(0, nc = 2, nr = twosteps): partial argument match of 'nc' to 'ncol' hierMeanReg: warning in matrix(0, nc = nCovariates, nr = steps): partial argument match of 'nr' to 'nrow' hierMeanReg: warning in matrix(0, nc = nCovariates, nr = steps): partial argument match of 'nc' to 'ncol' hierMeanReg: warning in matrix(rnorm(nCovariates * steps), nc = nCovariates): partial argument match of 'nc' to 'ncol' hierMeanReg: warning in matrix(0, nc = nGroups, nr = steps): partial argument match of 'nr' to 'nrow' hierMeanReg: warning in matrix(0, nc = nGroups, nr = steps): partial argument match of 'nc' to 'ncol' hierMeanReg: warning in matrix(rnorm(nGroups * steps), nc = nGroups): partial argument match of 'nc' to 'ncol' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK NOTE: There was 1 note. See 'd:/Rcompile/CRANpkg/local/2.15/Bolstad2.Rcheck/00check.log' for details.