* using log directory 'd:/Rcompile/CRANpkg/local/2.15/NeatMap.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'NeatMap/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'NeatMap' version '0.3.5' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'NeatMap' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CircularDendrogram: no visible binding for global variable 'group' CircularDendrogram: no visible binding for global variable 'x' CircularDendrogram: no visible binding for global variable 'y' DynamicLabels: no visible binding for '<<-' assignment to 'starty' DynamicLabels: no visible binding for '<<-' assignment to 'id' DynamicLabels : begin: no visible binding for '<<-' assignment to 'width' DynamicLabels : begin: no visible binding for '<<-' assignment to 'height' DynamicLabels : begin: no visible binding for '<<-' assignment to 'starty' DynamicLabels : update: no visible binding for '<<-' assignment to 'lambda' DynamicLabels : update: no visible binding for global variable 'starty' DynamicLabels : update: no visible binding for global variable 'height' DynamicLabels : update: no visible binding for global variable 'lambda' DynamicLabels : update: no visible binding for global variable 'id' DynamicLabels : update: no visible binding for '<<-' assignment to 'id' DynamicLabels : update: warning in text3d(positions, text = labels, cex = mysize, adj = 0): partial argument match of 'text' to 'texts' DynamicLabels : update: warning in text3d(positions, text = labels, cex = mysize, color = colors, adj = 0): partial argument match of 'text' to 'texts' circularmap: no visible binding for global variable 'label' draw.dendrogram: no visible binding for global variable 'x' draw.dendrogram: no visible binding for global variable 'y' draw.dendrogram: no visible binding for global variable 'group' draw.dendrogram3d: warning in text3d(positions, text = labels, cex = label.size): partial argument match of 'text' to 'texts' draw.dendrogram3d: warning in text3d(positions, text = labels, color = label.colors, cex = label.size): partial argument match of 'text' to 'texts' draw.labels: no visible binding for global variable 'x' draw.labels: no visible binding for global variable 'y' heatmap1: no visible binding for global variable 'x' heatmap1: no visible binding for global variable 'y' heatmap1: no visible binding for global variable 'values' profileplot3d: warning in text3d(textpos, text = labels, cex = label.size, adj = 0): partial argument match of 'text' to 'texts' profileplot3d: warning in text3d(textpos, text = labels, color = label.colors, cex = label.size, adj = 0): partial argument match of 'text' to 'texts' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK NOTE: There was 1 note. See 'd:/Rcompile/CRANpkg/local/2.15/NeatMap.Rcheck/00check.log' for details.