* using log directory 'd:/Rcompile/CRANpkg/local/2.15/QT.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'QT/DESCRIPTION' ... OK * this is package 'QT' version '1.3' * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... NOTE As from R 2.14.0 all packages need a namespace. One will be generated on installation, but it is better to handcraft a NAMESPACE file: R CMD build will produce a suitable starting point. CRAN requires a NAMESPACE file for all submissions. * checking whether package 'QT' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File 'QT/R/zzz.R': .First.lib calls: require(SASxport) require(Hmisc) require(lattice) require(grid) Package startup functions should not change the search path. See section 'Good practice' in ?.onAttach. DataCheck: warning in windows(rec = TRUE): partial argument match of 'rec' to 'record' MeanData: warning in windows(rec = TRUE): partial argument match of 'rec' to 'record' MeanData: no visible binding for global variable 'type' MeanData: no visible binding for global variable 'plotD' MeanData: no visible binding for global variable 'visit' MeanData: no visible binding for global variable 'plotDD' MeanData: no visible binding for global variable 'trtm' MeanData: no visible binding for global variable 'hr.cfb' MeanData: no visible binding for global variable 'rr' MeanData: no visible binding for global variable 'rr.cfb' MeanData: no visible binding for global variable 'plotDD.se' MeanData: no visible binding for global variable 'day' MeanData: no visible binding for global variable 'ddqtc' MeanData: no visible binding for global variable 'plotHys' QTconc: warning in windows(rec = TRUE): partial argument match of 'rec' to 'record' QTconc: warning in read.table("predblup.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTconc: warning in read.table("qtpred.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTconc: warning in read.table("paraest.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTconc: warning in read.table("random.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTconc: warning in read.table(file = "paraest.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTconc: warning in read.table(file = "iiv.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTconc: no visible binding for global variable 'ID' QTconc: no visible binding for global variable 'PAT' QTconc: no visible binding for global variable 'number' QTconc: no visible binding for global variable 'TYPE' QTconc: no visible binding for global variable 'TRT' QTconc: no visible binding for global variable 'Response' QTconc: no visible binding for global variable 'type' QTcorrections: warning in windows(rec = TRUE): partial argument match of 'rec' to 'record' QTcorrections: warning in read.table("qtcipred.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTcorrections: warning in read.table("qtcsponsorpred.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTcorrections: no visible binding for global variable 'Response' QTcorrections: no visible binding for global variable 'type' QTcorrections: warning in read.table(file = "qtciparaest.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTcorrections: warning in read.table(file = "qtciiiv.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTcorrections: warning in read.table(file = "qtcirandom.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTcorrections: warning in read.table("qtcsponsorparaest.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTcorrections: warning in read.table("qtcsponsoriiv.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTcorrections: warning in read.table("qtcsponsorrandom.csv", header = TRUE, stringsAsFactor = FALSE, sep = ","): partial argument match of 'stringsAsFactor' to 'stringsAsFactors' QTcorrections: no visible binding for global variable 'day' QTcorrections: no visible binding for global variable 'strip' QTcorrections: no visible binding for global variable 'id' QTtime: warning in windows(rec = TRUE): partial argument match of 'rec' to 'record' QTtime: no visible binding for global variable 'trtm' QTtime: no visible binding for global variable 'repfactor' QTtime : : no visible binding for global variable 'repfactor' QTtime: no visible binding for global variable 'DAY' QTtime: no visible binding for global variable 'trtm2' outputGraph: warning in win.metafile(file = paste(name, ".wmf", sep = ""), height = height, width = width): partial argument match of 'file' to 'filename' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK NOTE: There were 2 notes. See 'd:/Rcompile/CRANpkg/local/2.15/QT.Rcheck/00check.log' for details.