* using log directory 'd:/Rcompile/CRANpkg/local/2.15/StatFingerprints.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'StatFingerprints/DESCRIPTION' ... OK
* this is package 'StatFingerprints' version '2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
* checking whether package 'StatFingerprints' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Robject2SFGUI: no visible binding for '<<-' assignment to 'none'
Robject2SFGUI: no visible binding for '<<-' assignment to 'aaa'
Robject2SFGUI: no visible binding for global variable 'aaa'
Robject2SFGUI : ess: no visible binding for global variable 'aaa'
Robject2SFGUI : ess: warning in matrix(nr = 5, nc = 2): partial
  argument match of 'nr' to 'nrow'
Robject2SFGUI : ess: warning in matrix(nr = 5, nc = 2): partial
  argument match of 'nc' to 'ncol'
StatFingerprints: no visible binding for '<<-' assignment to 'filename'
StatFingerprints: no visible binding for global variable 'filename'
StatFingerprints: no visible binding for '<<-' assignment to 'mat.raw'
StatFingerprints: no visible binding for global variable 'mat'
StatFingerprints: no visible binding for global variable 'mat.raw'
StatFingerprints: no visible binding for '<<-' assignment to
  'mat.align'
StatFingerprints: no visible binding for global variable 'mat1'
StatFingerprints: no visible binding for global variable 'mat.align'
StatFingerprints: no visible binding for '<<-' assignment to 'rxref'
StatFingerprints: no visible binding for global variable 'rxref'
StatFingerprints: no visible binding for '<<-' assignment to 'fact'
StatFingerprints: no visible binding for global variable 'fact'
StatFingerprints: no visible binding for '<<-' assignment to 'param'
StatFingerprints: no visible binding for global variable 'param'
StatFingerprints: no visible binding for '<<-' assignment to 'div'
StatFingerprints: no visible binding for global variable 'div'
StatFingerprints: no visible binding for '<<-' assignment to 'alig'
StatFingerprints: no visible binding for global variable 'alig'
StatFingerprints: no visible binding for '<<-' assignment to
  'mat.background'
StatFingerprints: no visible binding for global variable 'mat2'
StatFingerprints: no visible binding for global variable
  'mat.background'
StatFingerprints: no visible binding for '<<-' assignment to
  'mat.baseline'
StatFingerprints: no visible binding for global variable 'mat3'
StatFingerprints: no visible binding for global variable 'mat.baseline'
StatFingerprints: no visible binding for '<<-' assignment to
  'mat.range'
StatFingerprints: no visible binding for global variable 'mat5'
StatFingerprints: no visible binding for global variable 'mat.range'
StatFingerprints: no visible binding for '<<-' assignment to
  'mat.analyse'
StatFingerprints: no visible binding for global variable 'mat6'
StatFingerprints: no visible binding for global variable 'mat.analyse'
StatFingerprints: no visible binding for '<<-' assignment to
  'mat.normalise'
StatFingerprints: no visible binding for global variable 'mat7'
StatFingerprints: no visible binding for global variable
  'mat.normalise'
StatFingerprints: no visible binding for '<<-' assignment to
  'mat.rebuilt'
StatFingerprints: no visible binding for global variable 'mat8'
StatFingerprints: no visible binding for global variable 'mat.rebuilt'
StatFingerprints: no visible binding for '<<-' assignment to
  'mat.binary'
StatFingerprints: no visible binding for global variable 'mat9'
StatFingerprints: no visible binding for global variable 'mat.binary'
StatFingerprints : export.matrix: no visible binding for global
  variable 'mat.raw'
StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.raw'
StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'div'
StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'alig'
StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.align'
StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.background'
StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.baseline'
StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.range'
StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.normalise'
StatFingerprints : export.matrix : OnOK: no visible binding for global
  variable 'mat.binary'
StatFingerprints : edit.div: no visible binding for '<<-' assignment to
  'div'
StatFingerprints : edit.div: no visible binding for global variable
  'div'
StatFingerprints : edit.summary.div: no visible binding for global
  variable 'div'
StatFingerprints : edit.fact: no visible binding for '<<-' assignment
  to 'fact'
StatFingerprints : edit.fact: no visible binding for global variable
  'fact'
StatFingerprints : edit.summary.fact: no visible binding for global
  variable 'fact'
StatFingerprints : edit.param: no visible binding for '<<-' assignment
  to 'param'
StatFingerprints : edit.param: no visible binding for global variable
  'param'
StatFingerprints : edit.summary.param: no visible binding for global
  variable 'param'
StatFingerprints : .write: no visible binding for global variable
  'filename'
StatFingerprints : .write: no visible binding for global variable
  'alig'
StatFingerprints : .write: no visible binding for global variable
  'mat.raw'
StatFingerprints : .write: no visible binding for global variable 'div'
StatFingerprints : .write: no visible binding for global variable
  'fact'
StatFingerprints : .write: no visible binding for global variable
  'param'
StatFingerprints : .write: no visible binding for global variable
  'rxref'
StatFingerprints : .write: no visible binding for global variable
  'mat.background'
StatFingerprints : .write: no visible binding for global variable
  'mat.baseline'
StatFingerprints : .write: no visible binding for global variable
  'mat.range'
StatFingerprints : .write: no visible binding for global variable
  'mat.normalise'
StatFingerprints : .write: no visible binding for global variable
  'mat.binary'
StatFingerprints : run: no visible binding for global variable 'txt'
align: no visible binding for global variable 'mat.raw'
alignGUI: no visible binding for global variable 'mat.raw'
alignGUI: no visible binding for global variable 'rxref'
alignGUI: warning in matrix(nc = rxref[length(rxref)] - rxref[1], nr =
  dim(mat.raw$rox)[1]): partial argument match of 'nr' to 'nrow'
alignGUI: warning in matrix(nc = rxref[length(rxref)] - rxref[1], nr =
  dim(mat.raw$rox)[1]): partial argument match of 'nc' to 'ncol'
alignGUI2: no visible binding for global variable 'alig'
alignGUI2 : select.profile: no visible binding for global variable
  'mat.raw'
alignGUI2 : select.profile: no visible binding for global variable
  'rxref'
alignGUI2 : select.profile: no visible binding for '<<-' assignment to
  'mat.analyse'
anosim_sf: no visible global function definition for 'permuted.index'
anovaGUI: no visible binding for global variable 'param'
anovaGUI: no visible binding for global variable 'div'
anovaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nr' to 'nrow'
anovaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nc' to 'ncol'
anovaGUI: no visible binding for global variable 'mat.analyse'
anovaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nr' to 'nrow'
anovaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nc' to 'ncol'
anovaGUI: no visible binding for global variable 'fact'
anovaGUI: warning in matrix(nr = 15, nc = 3): partial argument match of
  'nr' to 'nrow'
anovaGUI: warning in matrix(nr = 15, nc = 3): partial argument match of
  'nc' to 'ncol'
anovaGUI: no visible binding for '<<-' assignment to 'j'
anovaGUI : create.model: no visible binding for global variable 'j'
anovaGUI : create.model: no visible binding for '<<-' assignment to 'j'
anovaGUI : create.model: no visible binding for '<<-' assignment to
  'ano2'
anovaGUI : compute.anova: no visible binding for global variable 'ano2'
anovaGUI : compute.anova: no visible binding for global variable 'fact'
anovaGUI : test.tukey: no visible binding for global variable 'ano2'
anovaGUI : test.tukey: no visible binding for global variable 'fact'
askquitGUI: no visible binding for global variable 'MainMenu'
baselineGUI: no visible binding for global variable 'mat.align'
baselineGUI : compute.baseline: no visible binding for '<<-' assignment
  to 'mat.analyse'
best.nmdsGUI : compute.nmds: no visible binding for global variable
  'mat.binary'
best.nmdsGUI : compute.nmds: no visible binding for global variable
  'mat.analyse'
best.nmdsGUI : compute.nmds: no visible binding for '<<-' assignment to
  'fact_temp'
best.nmdsGUI : compute.nmds: no visible binding for global variable
  'fact'
best.nmdsGUI : compute.nmds: no visible binding for '<<-' assignment to
  'param_temp'
best.nmdsGUI : compute.nmds: no visible binding for global variable
  'param'
best.nmdsGUI : compute.nmds: warning in round(bestnmds$stress, digit =
  3): partial argument match of 'digit' to 'digits'
best.nmdsGUI : save.nmds: no visible binding for global variable
  'fact_temp'
best.nmdsGUI : save.nmds: no visible binding for global variable
  'param_temp'
best.ordination: no visible global function definition for 'reg.line'
best.ordination: warning in round(coeff.deter(lm), digit = 2): partial
  argument match of 'digit' to 'digits'
best.ordination: warning in round(coeff.deter(lm1), digit = 2): partial
  argument match of 'digit' to 'digits'
best.ordinationGUI : best.ordination.selection: no visible binding for
  global variable 'mat.analyse'
binaryGUI: no visible binding for global variable 'mat.range'
binaryGUI : help.binary: no visible binding for global variable
  'mat.raw'
binaryGUI : help.binary : plot.binary: no visible binding for global
  variable 'mat.analyse'
binaryGUI : compute.binary: no visible binding for global variable
  'mat.align'
binaryGUI : compute.binary: no visible binding for global variable
  'mat.background'
binaryGUI : compute.binary: no visible binding for global variable
  'mat.baseline'
binaryGUI : compute.binary: no visible binding for global variable
  'mat.range'
binaryGUI : compute.binary: no visible binding for global variable
  'mat.normalise'
binaryGUI : compute.binary: no visible binding for global variable
  'mat.rebuilt'
binaryGUI : compute.binary: no visible binding for '<<-' assignment to
  'mat.analyse'
capscaleGUI: no visible binding for global variable 'param'
capscaleGUI: no visible binding for global variable 'div'
capscaleGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nr' to 'nrow'
capscaleGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nc' to 'ncol'
capscaleGUI: no visible binding for global variable 'mat.analyse'
capscaleGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nr' to 'nrow'
capscaleGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nc' to 'ncol'
capscaleGUI: warning in matrix(nr = dim(mat.analyse)[1], nc = 7):
  partial argument match of 'nr' to 'nrow'
capscaleGUI: warning in matrix(nr = dim(mat.analyse)[1], nc = 7):
  partial argument match of 'nc' to 'ncol'
capscaleGUI: warning in matrix(nr = 5, nc = 2): partial argument match
  of 'nr' to 'nrow'
capscaleGUI: warning in matrix(nr = 5, nc = 2): partial argument match
  of 'nc' to 'ncol'
capscaleGUI: no visible binding for '<<-' assignment to
  'mat.analyse.na'
capscaleGUI: warning in matrix(nr = 15, nc = 3): partial argument match
  of 'nr' to 'nrow'
capscaleGUI: warning in matrix(nr = 15, nc = 3): partial argument match
  of 'nc' to 'ncol'
capscaleGUI: no visible binding for '<<-' assignment to 'j'
capscaleGUI : create.model: no visible binding for global variable 'j'
capscaleGUI : create.model: no visible binding for '<<-' assignment to
  'j'
capscaleGUI : create.model: no visible binding for '<<-' assignment to
  'ano2'
capscaleGUI : compute.capscale: no visible binding for global variable
  'ano2'
capscaleGUI : stepwise.capscale: no visible binding for global variable
  'ano2'
capscaleGUI : partial.capscale: no visible binding for global variable
  'ano2'
capscaleGUI : plot.capscale: no visible binding for global variable
  'ano2'
ccaGUI: no visible binding for global variable 'param'
ccaGUI: no visible binding for global variable 'div'
ccaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc = dim(param)[2]
  + 7): partial argument match of 'nr' to 'nrow'
ccaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc = dim(param)[2]
  + 7): partial argument match of 'nc' to 'ncol'
ccaGUI: no visible binding for global variable 'mat.analyse'
ccaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nr' to 'nrow'
ccaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nc' to 'ncol'
ccaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc = 7): partial
  argument match of 'nr' to 'nrow'
ccaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc = 7): partial
  argument match of 'nc' to 'ncol'
ccaGUI: warning in matrix(nr = 5, nc = 2): partial argument match of
  'nr' to 'nrow'
ccaGUI: warning in matrix(nr = 5, nc = 2): partial argument match of
  'nc' to 'ncol'
ccaGUI: no visible binding for '<<-' assignment to 'mat.analyse.na'
ccaGUI: warning in matrix(nr = 15, nc = 3): partial argument match of
  'nr' to 'nrow'
ccaGUI: warning in matrix(nr = 15, nc = 3): partial argument match of
  'nc' to 'ncol'
ccaGUI: no visible binding for '<<-' assignment to 'j'
ccaGUI : create.model: no visible binding for global variable 'j'
ccaGUI : create.model: no visible binding for '<<-' assignment to 'j'
ccaGUI : create.model: no visible binding for '<<-' assignment to
  'ano2'
ccaGUI : compute.cca: no visible binding for global variable 'ano2'
ccaGUI : stepwise.cca: no visible binding for global variable 'ano2'
ccaGUI : partial.cca: no visible binding for global variable 'ano2'
ccaGUI : plot.cca: no visible binding for global variable 'ano2'
checkfact: no visible binding for global variable 'fact'
checkparam: no visible binding for global variable 'param'
checkparam: no visible binding for global variable 'div'
checkprofile: no visible binding for global variable 'mat.raw'
convertGUI: no visible binding for '<<-' assignment to 'zf3'
convertGUI : view.channels: no visible binding for global variable
  'zf3'
convertGUI : view.channels : plot.channel: no visible binding for
  global variable 'zf3'
convertGUI: no visible binding for global variable 'zf3'
convertGUI : import.channels: no visible binding for global variable
  'zf3'
convertGUI : import.channels: no visible binding for '<<-' assignment
  to 'mat.raw'
convertGUI : import.channels: no visible binding for '<<-' assignment
  to 'mat.analyse'
convertGUI : import.channels: warning in matrix(nr =
  dim(mat$profil)[1], nc = 2): partial argument match of 'nr' to 'nrow'
convertGUI : import.channels: warning in matrix(nr =
  dim(mat$profil)[1], nc = 2): partial argument match of 'nc' to 'ncol'
convertGUI : import.channels: no visible binding for global variable
  'MainMenu'
correlationGUI: no visible binding for global variable 'param'
correlationGUI: no visible binding for global variable 'div'
correlationGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nr' to 'nrow'
correlationGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nc' to 'ncol'
correlationGUI: no visible binding for global variable 'mat.analyse'
correlationGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nr' to 'nrow'
correlationGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nc' to 'ncol'
delete.background: warning in matrix(nc = dim(mat)[2], nr =
  dim(mat)[1]): partial argument match of 'nr' to 'nrow'
delete.background: warning in matrix(nc = dim(mat)[2], nr =
  dim(mat)[1]): partial argument match of 'nc' to 'ncol'
delete.backgroundGUI: no visible binding for global variable
  'mat.range'
delete.backgroundGUI: no visible binding for global variable
  'mat.normalise'
delete.backgroundGUI : load.delete.background: no visible binding for
  '<<-' assignment to 'mat.background'
delete.backgroundGUI : load.delete.background: no visible binding for
  '<<-' assignment to 'mat.analyse'
delete.backgroundGUI : load.delete.background: warning in matrix(nr =
  5, nc = 2): partial argument match of 'nr' to 'nrow'
delete.backgroundGUI : load.delete.background: warning in matrix(nr =
  5, nc = 2): partial argument match of 'nc' to 'ncol'
deleteGUI: no visible binding for global variable 'alig'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.raw'
deleteGUI : delete.profile: no visible binding for global variable
  'mat.raw'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'div'
deleteGUI : delete.profile: no visible binding for global variable
  'div'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'param'
deleteGUI : delete.profile: no visible binding for global variable
  'param'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.align'
deleteGUI : delete.profile: no visible binding for global variable
  'mat.align'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'alig'
deleteGUI : delete.profile: no visible binding for global variable
  'alig'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.background'
deleteGUI : delete.profile: no visible binding for global variable
  'mat.background'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.baseline'
deleteGUI : delete.profile: no visible binding for global variable
  'mat.baseline'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.range'
deleteGUI : delete.profile: no visible binding for global variable
  'mat.range'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.analyse'
deleteGUI : delete.profile: no visible binding for global variable
  'mat.analyse'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.normalise'
deleteGUI : delete.profile: no visible binding for global variable
  'mat.normalise'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.rebuilt'
deleteGUI : delete.profile: no visible binding for global variable
  'mat.rebuilt'
deleteGUI : delete.profile: no visible binding for '<<-' assignment to
  'mat.binary'
deleteGUI : delete.profile: no visible binding for global variable
  'mat.binary'
deletefactGUI : select.factor: no visible binding for global variable
  'fact'
deletefactGUI : select.factor : select.level: no visible binding for
  global variable 'fact'
deletefactGUI : select.factor : select.level: no visible binding for
  global variable 'ae'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'ae'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to 'mat.raw'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.raw'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to 'div'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'div'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to 'param'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'param'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to 'alig'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'alig'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.align'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.align'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.background'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable
  'mat.background'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.baseline'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable
  'mat.baseline'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.range'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.range'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.analyse'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.analyse'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.normalise'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable
  'mat.normalise'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.rebuilt'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.rebuilt'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for '<<-' assignment to
  'mat.binary'
deletefactGUI : select.factor : select.level : window.factor :
  delete.selected: no visible binding for global variable 'mat.binary'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'ae'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'mat.raw'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.raw'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'div'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'div'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'param'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'param'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'alig'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'alig'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'mat.align'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.align'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.background'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable
  'mat.background'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.baseline'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.baseline'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to 'mat.range'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.range'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.analyse'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.analyse'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.normalise'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.normalise'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.rebuilt'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.rebuilt'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for '<<-' assignment to
  'mat.binary'
deletefactGUI : select.factor : select.level : window.factor :
  keep.selected: no visible binding for global variable 'mat.binary'
deletefactGUI : select.factor : select.level : window.factor: no
  visible binding for global variable 'MainMenu'
deletefactGUI : select.factor : window.level: no visible binding for
  '<<-' assignment to 'ae'
dendroGUI : compute.dendrogram: no visible binding for global variable
  'mat.binary'
dendroGUI : compute.dendrogram: no visible binding for global variable
  'mat.analyse'
des.univGUI: no visible binding for global variable 'param'
des.univGUI: no visible binding for global variable 'div'
des.univGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nr' to 'nrow'
des.univGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nc' to 'ncol'
des.univGUI: no visible binding for global variable 'mat.analyse'
des.univGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nr' to 'nrow'
des.univGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nc' to 'ncol'
des.univGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(div)[2]): partial argument match of 'nr' to 'nrow'
des.univGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(div)[2]): partial argument match of 'nc' to 'ncol'
des.univGUI: no visible binding for global variable 'fact'
des.univGUI : compute.descriptive.stat: warning in matrix(nc =
  length(s), nr = 3): partial argument match of 'nr' to 'nrow'
des.univGUI : compute.descriptive.stat: warning in matrix(nc =
  length(s), nr = 3): partial argument match of 'nc' to 'ncol'
des.univGUI : compute.shapiro.test: no visible binding for global
  variable 'div'
des.univGUI : compute.bartlett.test: no visible binding for global
  variable 'div'
diversities: warning in matrix(nr = dim(mat)[1], nc = 7, dimnames =
  list(c(rownames(mat)), c("Number_of_Peaks", "minus_log_Simpson",
  "1_minus_Simpson", "Shannon", "Buzas_Gibson_evenness",
  "Equitability", "Background_area"))): partial argument match of 'nr'
  to 'nrow'
diversities: warning in matrix(nr = dim(mat)[1], nc = 7, dimnames =
  list(c(rownames(mat)), c("Number_of_Peaks", "minus_log_Simpson",
  "1_minus_Simpson", "Shannon", "Buzas_Gibson_evenness",
  "Equitability", "Background_area"))): partial argument match of 'nc'
  to 'ncol'
diversities: no visible binding for global variable 'backgr'
diversities: no visible binding for global variable 'mat.binary'
diversitiesGUI: no visible binding for global variable 'mat.binary'
diversitiesGUI : help.define.peak: no visible binding for global
  variable 'mat.raw'
diversitiesGUI : help.define.peak : count.peaks: no visible binding for
  global variable 'mat.analyse'
diversitiesGUI : compute.diversity: no visible binding for global
  variable 'mat.analyse'
diversitiesGUI : export.diversity: no visible binding for global
  variable 'div'
export.distGUI: no visible binding for global variable 'mat.raw'
export.distGUI : OnOK: no visible binding for global variable
  'mat.analyse'
export.distGUI : OnOK: no visible global function definition for
  'dsvdist'
export.distGUI : OnOK: no visible binding for global variable
  'mat.binary'
ffcorGUI: no visible binding for global variable 'param'
ffcorGUI: no visible binding for global variable 'div'
ffcorGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nr' to 'nrow'
ffcorGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nc' to 'ncol'
ffcorGUI: no visible binding for global variable 'mat.analyse'
ffcorGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nr' to 'nrow'
ffcorGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nc' to 'ncol'
ffcorGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(div)[2]): partial argument match of 'nr' to 'nrow'
ffcorGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(div)[2]): partial argument match of 'nc' to 'ncol'
globalanosimGUI: no visible binding for global variable 'fact'
globalanosimGUI : compute.anosim: no visible binding for global
  variable 'mat.binary'
globalanosimGUI : compute.anosim: no visible binding for global
  variable 'mat.analyse'
globalanosimGUI : compute.anosim: no visible binding for global
  variable 'fact'
graphfactGUI: no visible binding for global variable 'param'
graphfactGUI: no visible binding for global variable 'div'
graphfactGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nr' to 'nrow'
graphfactGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2] + 7): partial argument match of 'nc' to 'ncol'
graphfactGUI: no visible binding for global variable 'mat.analyse'
graphfactGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nr' to 'nrow'
graphfactGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nc' to 'ncol'
graphfactGUI: no visible binding for global variable 'fact'
graphfactGUI : graphfact : casun: no visible binding for global
  variable 'fact'
graphfactGUI : graphfact : casun : ajseg: no visible binding for global
  variable 'fact'
graphfactGUI : graphfact : casdeux: no visible binding for global
  variable 'fact'
graphfactGUI : graphfact : casdeux : casdeuxd: no visible binding for
  global variable 'fact'
heat.mapGUI : compute.heatmap: no visible binding for global variable
  'mat.binary'
heat.mapGUI : compute.heatmap: no visible binding for global variable
  'mat.analyse'
importGUI1 : import.channels: no visible binding for '<<-' assignment
  to 'mat.analyse'
importGUI1 : import.channels: warning in matrix(nr =
  dim(mat.raw$profil)[1], nc = 2): partial argument match of 'nr' to
  'nrow'
importGUI1 : import.channels: warning in matrix(nr =
  dim(mat.raw$profil)[1], nc = 2): partial argument match of 'nc' to
  'ncol'
importGUI2 : import.file: no visible binding for global variable
  'mat.raw'
importGUI2 : import.file: no visible binding for global variable
  'MainMenu'
importGUI3 : import.file: warning in read.table(file = fil, colClasses
  = "character", dec = dec, sep = sep, h = heac): partial argument
  match of 'h' to 'header'
importGUI3 : import.file: warning in matrix(nr = dim(m)[1], nc =
  dim(m)[2]): partial argument match of 'nr' to 'nrow'
importGUI3 : import.file: warning in matrix(nr = dim(m)[1], nc =
  dim(m)[2]): partial argument match of 'nc' to 'ncol'
importGUI3 : import.file: warning in matrix(nr =
  dim(mat.raw$profil)[1], nc = 2): partial argument match of 'nr' to
  'nrow'
importGUI3 : import.file: warning in matrix(nr =
  dim(mat.raw$profil)[1], nc = 2): partial argument match of 'nc' to
  'ncol'
iterative.test : iterative.fisher: warning in matrix(nc = 2, nr = 2):
  partial argument match of 'nr' to 'nrow'
iterative.test : iterative.fisher: warning in matrix(nc = 2, nr = 2):
  partial argument match of 'nc' to 'ncol'
iterative.test : iterative.fisher: warning in matrix(nc = dim(bin)[2],
  nr = 3): partial argument match of 'nr' to 'nrow'
iterative.test : iterative.fisher: warning in matrix(nc = dim(bin)[2],
  nr = 3): partial argument match of 'nc' to 'ncol'
iterative.test: warning in round(c((length(which(z == 0)) *
  100)/length(z)), digit = 0): partial argument match of 'digit' to
  'digits'
iterative.test: warning in round(c((length(which(z[3, ] == 1)) *
  100)/dim(z)[2]), digit = 0): partial argument match of 'digit' to
  'digits'
iterative.testGUI: no visible binding for global variable 'fact'
iterative.testGUI : select.factor: no visible binding for '<<-'
  assignment to 'ae'
iterative.testGUI : select.factor: no visible binding for global
  variable 'fact'
iterative.testGUI : select.factor: no visible binding for global
  variable 'ae'
iterative.testGUI : select.factor: no visible binding for global
  variable 'mat.binary'
iterative.testGUI : select.factor: no visible binding for global
  variable 'mat.analyse'
iterative.testGUI1: no visible binding for '<<-' assignment to 'a'
iterative.testGUI1 : compute.iterative: no visible binding for '<<-'
  assignment to 'niv'
iterative.testGUI1 : compute.iterative: no visible binding for global
  variable 'niv'
iterative.testGUI1 : view.distribution: no visible binding for global
  variable 'a'
iterative.testGUI1 : view.distribution: warning in round(locator(1,
  type = "p", pch = 4)[[1]], digit = 0): partial argument match of
  'digit' to 'digits'
iterative.testGUI1 : view.distribution: no visible binding for global
  variable 'niv'
loadGUI: no visible binding for '<<-' assignment to 'filename'
loadGUI: no visible binding for global variable 'filename'
loadGUI: no visible binding for '<<-' assignment to 'mat.raw'
loadGUI: no visible binding for global variable 'mat'
loadGUI: no visible binding for global variable 'mat.raw'
loadGUI: no visible binding for '<<-' assignment to 'mat.align'
loadGUI: no visible binding for global variable 'mat1'
loadGUI: no visible binding for global variable 'mat.align'
loadGUI: no visible binding for '<<-' assignment to 'rxref'
loadGUI: no visible binding for global variable 'rxref'
loadGUI: no visible binding for '<<-' assignment to 'fact'
loadGUI: no visible binding for global variable 'fact'
loadGUI: no visible binding for '<<-' assignment to 'param'
loadGUI: no visible binding for global variable 'param'
loadGUI: no visible binding for '<<-' assignment to 'alig'
loadGUI: no visible binding for global variable 'alig'
loadGUI: no visible binding for '<<-' assignment to 'mat.background'
loadGUI: no visible binding for global variable 'mat2'
loadGUI: no visible binding for global variable 'mat.background'
loadGUI: no visible binding for '<<-' assignment to 'mat.baseline'
loadGUI: no visible binding for global variable 'mat3'
loadGUI: no visible binding for global variable 'mat.baseline'
loadGUI: no visible binding for '<<-' assignment to 'mat.range'
loadGUI: no visible binding for global variable 'mat5'
loadGUI: no visible binding for global variable 'mat.range'
loadGUI: no visible binding for '<<-' assignment to 'mat.analyse'
loadGUI: no visible binding for global variable 'mat6'
loadGUI: no visible binding for global variable 'mat.analyse'
loadGUI: no visible binding for '<<-' assignment to 'mat.normalise'
loadGUI: no visible binding for global variable 'mat7'
loadGUI: no visible binding for global variable 'mat.normalise'
loadGUI: no visible binding for '<<-' assignment to 'mat.rebuilt'
loadGUI: no visible binding for global variable 'mat8'
loadGUI: no visible binding for global variable 'mat.rebuilt'
loadGUI: no visible binding for '<<-' assignment to 'mat.binary'
loadGUI: no visible binding for global variable 'mat9'
loadGUI: no visible binding for global variable 'mat.binary'
make.peakGUI: no visible binding for '<<-' assignment to 'mat.rebuilt'
make.peakGUI: no visible binding for global variable 'mat.analyse'
make.peakGUI: no visible binding for global variable 'mat.rebuilt'
make.peakGUI: no visible binding for global variable 'mat.raw'
make.peakGUI : compute.peak.modification: no visible binding for global
  variable 'mat.normalise'
make.peakGUI : compute.peak.modification: no visible binding for '<<-'
  assignment to 'sel'
make.peakGUI : compute.peak.modification: no visible binding for '<<-'
  assignment to 'ss'
make.peakGUI : save.peak: no visible binding for global variable 'sel'
make.peakGUI : save.peak: no visible binding for global variable 'ss'
make.peakGUI : save.peak: no visible binding for global variable
  'mat.raw'
make.peakGUI : save.peak: no visible binding for '<<-' assignment to
  'mat.analyse'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'mat.raw.1'
mergeGUI : load.project: no visible binding for global variable
  'mat.raw'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'mat.align.1'
mergeGUI : load.project: no visible binding for global variable
  'mat.align'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'rxref1'
mergeGUI : load.project: no visible binding for global variable 'rxref'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'fact1'
mergeGUI : load.project: no visible binding for global variable 'fact'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'param1'
mergeGUI : load.project: no visible binding for global variable 'param'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'div1'
mergeGUI : load.project: no visible binding for global variable 'div'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'alig1'
mergeGUI : load.project: no visible binding for global variable 'alig'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'mat.raw.2'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'mat.align.2'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'rxref2'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'fact2'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'param2'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'div2'
mergeGUI : load.project: no visible binding for '<<-' assignment to
  'alig2'
mergeGUI : merge: no visible binding for global variable 'rxref2'
mergeGUI : merge: no visible binding for global variable 'rxref1'
mergeGUI : merge: no visible binding for global variable 'fact1'
mergeGUI : merge: no visible binding for global variable 'fact2'
mergeGUI : merge: no visible binding for global variable 'param1'
mergeGUI : merge: no visible binding for global variable 'param2'
mergeGUI : merge: no visible binding for global variable 'mat.raw.1'
mergeGUI : merge: no visible binding for global variable 'mat.raw.2'
mergeGUI : merge: no visible binding for global variable 'mat.align.1'
mergeGUI : merge: no visible binding for global variable 'mat.align.2'
mergeGUI : merge: no visible binding for '<<-' assignment to 'mat.raw'
mergeGUI : merge: no visible binding for global variable 'mat.raw'
mergeGUI : merge: no visible binding for '<<-' assignment to
  'mat.align'
mergeGUI : merge: no visible binding for '<<-' assignment to 'rxref'
mergeGUI : merge: no visible binding for '<<-' assignment to 'fact'
mergeGUI : merge: no visible binding for global variable 'fact'
mergeGUI : merge: no visible binding for '<<-' assignment to 'alig'
mergeGUI : merge: no visible binding for global variable 'alig1'
mergeGUI : merge: no visible binding for global variable 'alig2'
mergeGUI : merge: no visible binding for '<<-' assignment to 'param'
mergeGUI : merge: no visible binding for '<<-' assignment to 'div'
mergeGUI : merge: no visible binding for global variable 'div1'
mergeGUI : merge: no visible binding for global variable 'div2'
mergeGUI : merge: warning in matrix(nr = dim(mat.align)[1], nc = 2):
  partial argument match of 'nr' to 'nrow'
mergeGUI : merge: warning in matrix(nr = dim(mat.align)[1], nc = 2):
  partial argument match of 'nc' to 'ncol'
mergeGUI : merge: no visible binding for global variable 'mat.align'
mergeGUI : merge: no visible binding for '<<-' assignment to
  'mat.analyse'
newrdata: warning in matrix(nr = 5, nc = 2): partial argument match of
  'nr' to 'nrow'
newrdata: warning in matrix(nr = 5, nc = 2): partial argument match of
  'nc' to 'ncol'
normalisationGUI: no visible binding for global variable 'mat.baseline'
normalisationGUI: no visible binding for global variable 'mat.range'
normalisationGUI : compute.normalisation: warning in matrix(nr = 5, nc
  = 2): partial argument match of 'nr' to 'nrow'
normalisationGUI : compute.normalisation: warning in matrix(nr = 5, nc
  = 2): partial argument match of 'nc' to 'ncol'
normalisationGUI : compute.normalisation: no visible binding for global
  variable 'mat.range'
normalisationGUI : compute.normalisation: no visible binding for '<<-'
  assignment to 'mat.analyse'
normalisationGUI : compute.normalisation: no visible binding for '<<-'
  assignment to 'mat.normalise'
pcaGUI : scree.plot: no visible binding for global variable
  'mat.analyse'
pcaGUI : compute.pca: no visible binding for global variable
  'mat.analyse'
pcaGUI : compute.pca: no visible binding for '<<-' assignment to 'pcaf'
pcaGUI : compute.pca: no visible binding for '<<-' assignment to
  'fact_temp'
pcaGUI : compute.pca: no visible binding for global variable 'fact'
pcaGUI : compute.pca: no visible binding for '<<-' assignment to
  'param_temp'
pcaGUI : compute.pca: no visible binding for global variable 'param'
pcaGUI : save.pca: no visible binding for global variable 'pcaf'
pcaGUI : save.pca: no visible binding for global variable 'fact_temp'
pcaGUI : save.pca: no visible binding for global variable 'param_temp'
peakparameters: warning in matrix(nc = nbint, nr = 4): partial argument
  match of 'nr' to 'nrow'
peakparameters: warning in matrix(nc = nbint, nr = 4): partial argument
  match of 'nc' to 'ncol'
peakparameters: warning in matrix(nc = length(voisin), nr = 2): partial
  argument match of 'nr' to 'nrow'
peakparameters: warning in matrix(nc = length(voisin), nr = 2): partial
  argument match of 'nc' to 'ncol'
peakparameters: warning in matrix(nc = length(seuil), nr = 2): partial
  argument match of 'nr' to 'nrow'
peakparameters: warning in matrix(nc = length(seuil), nr = 2): partial
  argument match of 'nc' to 'ncol'
peakparameters: warning in round(y, digit = digit): partial argument
  match of 'digit' to 'digits'
peakparameters: warning in matrix(nc = dim(matmaxfin1)[2], nr = 5):
  partial argument match of 'nr' to 'nrow'
peakparameters: warning in matrix(nc = dim(matmaxfin1)[2], nr = 5):
  partial argument match of 'nc' to 'ncol'
peakparameters: warning in matrix(nr = dim(matmaxfin2)[2], nc = 10000):
  partial argument match of 'nr' to 'nrow'
peakparameters: warning in matrix(nr = dim(matmaxfin2)[2], nc = 10000):
  partial argument match of 'nc' to 'ncol'
permanovaGUI: no visible binding for global variable 'fact'
permanovaGUI: warning in matrix(nr = 15, nc = 3): partial argument
  match of 'nr' to 'nrow'
permanovaGUI: warning in matrix(nr = 15, nc = 3): partial argument
  match of 'nc' to 'ncol'
permanovaGUI: no visible binding for '<<-' assignment to 'j'
permanovaGUI : create.model: no visible binding for global variable 'j'
permanovaGUI : create.model: no visible binding for '<<-' assignment to
  'j'
permanovaGUI : create.model: no visible binding for global variable
  'fact'
permanovaGUI : create.model: no visible binding for '<<-' assignment to
  'ano2'
permanovaGUI : compute.permanova: no visible binding for global
  variable 'ano2'
permanovaGUI : compute.permanova: no visible binding for global
  variable 'fact'
plot2dGUI: no visible binding for global variable 'mat.raw'
plot2dGUI : plot2d: no visible binding for global variable
  'mat.analyse'
plot2dGUI : plot2d: no visible binding for global variable 'mat.raw'
plot3dim: no visible binding for global variable 'myp'
plot3dimGUI: no visible binding for '<<-' assignment to 'colorlut'
plot3dimGUI: no visible binding for global variable 'mat.analyse'
plot3dimGUI: no visible binding for '<<-' assignment to 'myp'
plot3dimGUI : plot3d: no visible binding for global variable
  'mat.analyse'
plot3dimGUI : plot3d: no visible binding for global variable 'MainMenu'
plotord3dGUI: no visible binding for global variable 'fact_temp'
plotord3dGUI : plotord3d: no visible binding for global variable 'pcaf'
plotord3dGUI : plotord3d: warning in round(bestnmds$stress, digit = 3):
  partial argument match of 'digit' to 'digits'
plotord3dGUI : plotord3d: no visible binding for global variable
  'fact_temp'
plotordGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param_temp)[2]): partial argument match of 'nr' to 'nrow'
plotordGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param_temp)[2]): partial argument match of 'nc' to 'ncol'
plotordGUI: no visible binding for global variable 'mat.analyse'
plotordGUI: no visible binding for global variable 'param_temp'
plotordGUI: no visible binding for global variable 'fact_temp'
plotordGUI : plotord: no visible binding for global variable 'pcaf'
plotordGUI : plotord: no visible binding for '<<-' assignment to 'colo'
plotordGUI : plotord: no visible binding for global variable 'fact'
plotordGUI : plotord: no visible binding for '<<-' assignment to 'pche'
plotordGUI : plotord : zz: no visible binding for '<<-' assignment to
  'pche'
plotordGUI : plotord: warning in round(bestnmds$stress, digit = 3):
  partial argument match of 'digit' to 'digits'
plotordGUI : plotord: no visible binding for global variable 'colo'
plotordGUI : plotord: no visible binding for global variable 'pche'
pwanosimGUI: no visible binding for global variable 'fact'
pwanosimGUI : pwanosimGUI1: no visible binding for global variable
  'fact'
pwanosimGUI : pwanosimGUI1: no visible binding for global variable 'ae'
pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for
  global variable 'mat.binary'
pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for
  global variable 'fact'
pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for
  global variable 'ae'
pwanosimGUI : pwanosimGUI1 : compute.pwanosim: no visible binding for
  global variable 'mat.analyse'
pwanosimGUI : load.pwanosim: no visible binding for '<<-' assignment to
  'ae'
rdaGUI: no visible binding for global variable 'param'
rdaGUI: no visible binding for global variable 'div'
rdaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc = dim(param)[2]
  + 7): partial argument match of 'nr' to 'nrow'
rdaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc = dim(param)[2]
  + 7): partial argument match of 'nc' to 'ncol'
rdaGUI: no visible binding for global variable 'mat.analyse'
rdaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nr' to 'nrow'
rdaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc =
  dim(param)[2]): partial argument match of 'nc' to 'ncol'
rdaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc = 7): partial
  argument match of 'nr' to 'nrow'
rdaGUI: warning in matrix(nr = dim(mat.analyse)[1], nc = 7): partial
  argument match of 'nc' to 'ncol'
rdaGUI: warning in matrix(nr = 5, nc = 2): partial argument match of
  'nr' to 'nrow'
rdaGUI: warning in matrix(nr = 5, nc = 2): partial argument match of
  'nc' to 'ncol'
rdaGUI: no visible binding for '<<-' assignment to 'mat.analyse.na'
rdaGUI: warning in matrix(nr = 15, nc = 3): partial argument match of
  'nr' to 'nrow'
rdaGUI: warning in matrix(nr = 15, nc = 3): partial argument match of
  'nc' to 'ncol'
rdaGUI: no visible binding for '<<-' assignment to 'j'
rdaGUI : create.model: no visible binding for global variable 'j'
rdaGUI : create.model: no visible binding for '<<-' assignment to 'j'
rdaGUI : create.model: no visible binding for '<<-' assignment to
  'ano2'
rdaGUI : compute.rda: no visible binding for global variable 'ano2'
rdaGUI : stepwise.rda: no visible binding for global variable 'ano2'
rdaGUI : partial.rda: no visible binding for global variable 'ano2'
rdaGUI : plot.rda: no visible binding for global variable 'ano2'
roxdefault: no visible binding for '<<-' assignment to 'rxref'
roxdefault: no visible binding for global variable 'rxref'
roxdefault: no visible binding for global variable 'MainMenu'
roxnewGUI : define.new.rox: no visible binding for '<<-' assignment to
  'roxref'
roxnewGUI : define.new.rox : defroxref: no visible binding for global
  variable 'MainMenu'
roxnewGUI : define.new.rox: no visible binding for global variable
  'roxref'
roxnewGUI : define.new.rox: no visible binding for '<<-' assignment to
  'rxref'
roxnewGUI : define.new.rox: no visible binding for global variable
  'rxref'
roxnewGUI : help.define.new.rox: no visible binding for global variable
  'mat.raw'
roxnewGUI : help.define.new.rox: warning in round((loc$x), digit = 0):
  partial argument match of 'digit' to 'digits'
saveasGUI: no visible binding for global variable 'MainMenu'
simperGUI: no visible binding for global variable 'fact'
simperGUI : load.simper: no visible binding for '<<-' assignment to
  'ae'
simperGUI1: no visible binding for global variable 'fact'
simperGUI1: no visible binding for global variable 'ae'
simperGUI1 : compute.simper: no visible binding for global variable
  'fact'
simperGUI1 : compute.simper: no visible binding for global variable
  'ae'
simperGUI1 : compute.simper: no visible binding for global variable
  'mat.analyse'
simperGUI1 : compute.simper: no visible binding for '<<-' assignment to
  'simper.data'
simperGUI1 : export.simper: no visible binding for global variable
  'simper.data'
trunck: warning in matrix(nc = (abs(l[1] - l[2]) + 1), nr =
  dim(mat)[1]): partial argument match of 'nr' to 'nrow'
trunck: warning in matrix(nc = (abs(l[1] - l[2]) + 1), nr =
  dim(mat)[1]): partial argument match of 'nc' to 'ncol'
trunckGUI: no visible binding for global variable 'mat.align'
trunckGUI: no visible binding for global variable 'mat.baseline'
trunckGUI : define.range: no visible binding for global variable
  'mat.baseline'
waitGUI: no visible binding for '<<-' assignment to 'z'
waitGUI: no visible binding for global variable 'z'
withingroupvariability: no visible binding for global variable 'fact'
withingroupvariability: no visible binding for global variable 'sel'
withingroupvariabilityGUI: no visible binding for global variable
  'fact'
withingroupvariabilityGUI : compute.withingroupvariability: no visible
  binding for global variable 'mat.binary'
withingroupvariabilityGUI : compute.withingroupvariability: no visible
  binding for global variable 'mat.analyse'
withingroupvariabilityGUI : compute.withingroupvariability: no visible
  binding for global variable 'fact'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/StatFingerprints.Rcheck/00check.log'
for details.