* using log directory 'd:/Rcompile/CRANpkg/local/2.15/assist.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'assist/DESCRIPTION' ... OK
* this is package 'assist' version '3.1.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'assist' can be installed ... WARNING
Found the following significant warnings:
  Warning: Rank mismatch in argument 'varht' at (1) (rank-1 and scalar)
  Warning: Rank mismatch in argument 'qy' at (1) (rank-1 and scalar)
  Warning: Rank mismatch in argument 'qty' at (1) (rank-1 and scalar)
  Warning: Rank mismatch in argument 'score' at (1) (rank-1 and scalar)
See 'd:/Rcompile/CRANpkg/local/2.15/assist.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'assist/R/assist.R':
  .onLoad calls:
    require(nlme)

Package startup functions should not change the search path.
See section 'Good practice' in ?.onAttach.

plot.bCI: no visible global function definition for 'xyplot'
slm: warning in match.call(expand = FALSE): partial argument match of
  'expand' to 'expand.dots'
slm: no visible binding for global variable 'response'
slm: warning in lme(formula, control = control, random = tmp1, corr =
  correlation, weights = weights): partial argument match of 'corr' to
  'correlation'
slm: warning in lme(formula, control = control, random = tmp1, corr =
  correlation, weights = weights, data = slmData): partial argument
  match of 'corr' to 'correlation'
snm: warning in exists(funcName[i], env = .env): partial argument match
  of 'env' to 'envir'
snm: warning in eval(parse(text = funcName[i]), env = .env): partial
  argument match of 'env' to 'envir'
snm: warning in assign(funcName[i], spline.f0[[i]], env = .env):
  partial argument match of 'env' to 'envir'
snm: warning in assign(funcName[i], spline.f[[i]], env = .env): partial
  argument match of 'env' to 'envir'
snm: no visible global function definition for 'matDiag'
snm: warning in assign(funcName[i], oldF[[i]], env = .env): partial
  argument match of 'env' to 'envir'
snr: warning in exists(funcName[i], env = .env): partial argument match
  of 'env' to 'envir'
snr: warning in eval(parse(text = funcName[i]), env = .env): partial
  argument match of 'env' to 'envir'
snr: warning in assign(funcName[i], spline.f[[i]], env = .env): partial
  argument match of 'env' to 'envir'
snr: warning in assign(funcName[i], oldF[[i]], env = .env): partial
  argument match of 'env' to 'envir'
ssr: warning in match.call(expand = FALSE): partial argument match of
  'expand' to 'expand.dots'
ssr: no visible binding for global variable 'response'
ssr: warning in lme(formula, random = list(tmpGrp = pdIdent(~tmp.z -
  1)), corr = correlation, weights = weights, data = lmeData): partial
  argument match of 'corr' to 'correlation'
ssr: warning in lme(formula, random = list(tmpGrp = pdIdent(~tmp.z -
  1)), corr = correlation, weights = weights): partial argument match
  of 'corr' to 'correlation'
ssr: warning in lme(formula, random = list(tmpGrp =
  pdBlocked(tmp.block)), corr = correlation, weights = weights, data =
  lmeData): partial argument match of 'corr' to 'correlation'
ssr: warning in lme(formula, random = list(tmpGrp =
  pdBlocked(tmp.block)), corr = correlation, weights = weights):
  partial argument match of 'corr' to 'correlation'
table2: no visible global function definition for 'is.category'
table2: no visible global function definition for 'which.na'
xyplot2: no visible global function definition for 'xyplot'
xyplot2 : <anonymous>: no visible global function definition for
  'strip.default'
xyplot2 : <anonymous>: no visible global function definition for
  'panel.xyplot'
xyplot2 : <anonymous>: no visible global function definition for
  'panel.superpose'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'deviance.ssr':
  'deviance.ssr'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File 'd:/Rcompile/CRANpkg/lib/2.15/assist/libs/i386/assist.dll':
  Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
    (Fortran)
    Object: 'rkpk1.o'
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
    Objects: 'gfmain.o', 'rkpk1.o'
File 'd:/Rcompile/CRANpkg/lib/2.15/assist/libs/x64/assist.dll':
  Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
    (Fortran)
    Object: 'rkpk1.o'
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
    Objects: 'gfmain.o', 'rkpk1.o'

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 3 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/assist.Rcheck/00check.log'
for details.