* using log directory 'd:/Rcompile/CRANpkg/local/2.15/bark.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using options '--no-examples --no-tests --no-vignettes'
* checking for file 'bark/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'bark' version '0.1-0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'bark' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bark: warning in matrix(x.train, nc = 1): partial argument match of
  'nc' to 'ncol'
bark: warning in matrix(x.test, nc = 1): partial argument match of 'nc'
  to 'ncol'
bark: warning in matrix(NA, nr = dim(x.train)[1], nkeep): partial
  argument match of 'nr' to 'nrow'
bark: warning in matrix(NA, nr = dim(x.test)[1], nkeep): partial
  argument match of 'nr' to 'nrow'
bark: warning in matrix(NA, nc = fixed$n + 1, nr = nkeep): partial
  argument match of 'nr' to 'nrow'
bark: warning in matrix(NA, nc = fixed$n + 1, nr = nkeep): partial
  argument match of 'nc' to 'ncol'
bark: warning in matrix(NA, nc = fixed$p, nr = nkeep): partial argument
  match of 'nr' to 'nrow'
bark: warning in matrix(NA, nc = fixed$p, nr = nkeep): partial argument
  match of 'nc' to 'ncol'
bark: warning in matrix(NA, nc = 1, nr = nkeep): partial argument match
  of 'nr' to 'nrow'
bark: warning in matrix(NA, nc = 1, nr = nkeep): partial argument match
  of 'nc' to 'ncol'
getdesign: warning in matrix(z, nc = length(isi)): partial argument
  match of 'nc' to 'ncol'
getfulldesign: warning in matrix(z, nc = length(isi)): partial argument
  match of 'nc' to 'ncol'
llike: warning in matrix(fullXX[, theta$nvec > 0], nc = sum(theta$nvec
  > 0)): partial argument match of 'nc' to 'ncol'
matDel: warning in matrix(0, nr = 0, nc = dimmat[2]): partial argument
  match of 'nr' to 'nrow'
matDel: warning in matrix(0, nr = 0, nc = dimmat[2]): partial argument
  match of 'nc' to 'ncol'
matDel: warning in matrix(mat[-del, ], nr = 1): partial argument match
  of 'nr' to 'nrow'
matDel: warning in matrix(mat[-del, ], nc = dimmat[2]): partial
  argument match of 'nc' to 'ncol'
matUpd: warning in matrix(mat, nr = 1): partial argument match of 'nr'
  to 'nrow'
sim.Circle: warning in matrix(runif(n * dim, min = -1, max = 1), nr =
  n): partial argument match of 'nr' to 'nrow'
sim.Friedman1: warning in matrix(runif(n * 10, min = 0, max = 1), nc =
  10): partial argument match of 'nc' to 'ncol'
updacc: warning in matrix(c(cur[[lencur]], 1), nr = 1): partial
  argument match of 'nr' to 'nrow'
updatebeta: warning in matrix(fullXX[, theta$nvec > 0], nc =
  sum(theta$nvec > 0)): partial argument match of 'nc' to 'ncol'
updatez: warning in matrix(fullXX[, theta$nvec > 0], nc =
  sum(theta$nvec > 0)): partial argument match of 'nc' to 'ncol'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
  'd:/Rcompile/CRANpkg/local/2.15/bark.Rcheck/00check.log'
for details.
* using check arguments '--no-examples --no-tests --no-vignettes'