* using log directory 'd:/Rcompile/CRANpkg/local/2.15/intamapInteractive.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'intamapInteractive/DESCRIPTION' ... OK
* this is package 'intamapInteractive' version '1.1-1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'intamapInteractive' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
calculateDensity: warning in filled.contour(density_L, color =
  terrain.colors): partial argument match of 'color' to 'color.palette'
ssaMap: warning in factor(overselect[i - 1], level =
  levels(netPts@data[, i])): partial argument match of 'level' to
  'levels'
ssaMap: warning in factor(round(lres), level = levels(netPts@data[,
  i])): partial argument match of 'level' to 'levels'
ssaOptim: warning in factor(round(lres), level = levels(predGrid@data[,
  vname])): partial argument match of 'level' to 'levels'
Found .Internal call in the following function:
  'zip.file.extract.dir'
with calls to .Internal functions
  'int.unzip'

Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'anisotropyChoice.R'
  Comparing 'anisotropyChoice.Rout' to 'anisotropyChoice.Rout.save' ...4,6d3
< Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
< This is mgcv 1.7-17. For overview type 'help("mgcv-package")'.
< deldir 0.0-19
8,11c5,9
<      PLEASE NOTE:  The components "delsgs" and "summary" of the 
<      object returned by deldir() are now DATA FRAMES rather than 
<      matrices (as they were prior to release 0.0-18). 
<      See help("deldir").
---
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
13c11,20
<      PLEASE NOTE: The process for determining duplicated points
---
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
> Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
> 
>      Please note: The process for determining duplicated points
16c23
< spatstat 1.27-0 
---
> spatstat 1.24-1 
20a28,34
> Attaching package: 'spatstat'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     rescale
> 
> 
25c39
<     as.Date, as.Date.numeric
---
>     as.Date
34,38c48,54
< Geospatial Data Abstraction Library extensions to R successfully loaded
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/proj
---
> 
> Attaching package: 'akima'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     interp
> 
45a62
> There were 12 warnings (use warnings() to see them)
65c82
< [1] 1.197202
---
> [1] 1.196326
68c85
< [1] 87.14523
---
> [1] 87.29871
72c89
< [1,]    1 1.197202 87.14523  470 68531
---
> [1,]    1 1.196326 87.29871  470 68531
  Running 'biasCorr.R'
  Comparing 'biasCorr.Rout' to 'biasCorr.Rout.save' ...4,6d3
< Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
< This is mgcv 1.7-17. For overview type 'help("mgcv-package")'.
< deldir 0.0-19
8,11c5,9
<      PLEASE NOTE:  The components "delsgs" and "summary" of the 
<      object returned by deldir() are now DATA FRAMES rather than 
<      matrices (as they were prior to release 0.0-18). 
<      See help("deldir").
---
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
13c11,20
<      PLEASE NOTE: The process for determining duplicated points
---
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
> Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
> 
>      Please note: The process for determining duplicated points
16c23
< spatstat 1.27-0 
---
> spatstat 1.24-1 
20a28,34
> Attaching package: 'spatstat'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     rescale
> 
> 
25c39
<     as.Date, as.Date.numeric
---
>     as.Date
34,38c48,54
< Geospatial Data Abstraction Library extensions to R successfully loaded
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/proj
---
> 
> Attaching package: 'akima'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     interp
> 
45a62
> There were 12 warnings (use warnings() to see them)
102,104c119,121
< x3  8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996583 0.06706801
< x4  5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430784 0.04975117
< x5  4  0.099305510 0.08948375  1.10976021 0.38266270  0.081768042 0.07854582
---
> x3  8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996582 0.06706801
> x4  5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430783 0.04975117
> x5  4  0.099305510 0.08948375  1.10976021 0.38266270  0.081768041 0.07854582
110c127
< x2  -5.8387562 0.02810256
---
> x2  -5.8387563 0.02810256
  Running 'findLocalBias.R'
  Comparing 'findLocalBias.Rout' to 'findLocalBias.Rout.save' ...5,7d4
< Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
< This is mgcv 1.7-17. For overview type 'help("mgcv-package")'.
< deldir 0.0-19
9,12c6,10
<      PLEASE NOTE:  The components "delsgs" and "summary" of the 
<      object returned by deldir() are now DATA FRAMES rather than 
<      matrices (as they were prior to release 0.0-18). 
<      See help("deldir").
---
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
14c12,21
<      PLEASE NOTE: The process for determining duplicated points
---
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
> Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
> 
>      Please note: The process for determining duplicated points
17c24
< spatstat 1.27-0 
---
> spatstat 1.24-1 
21a29,35
> Attaching package: 'spatstat'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     rescale
> 
> 
26c40
<     as.Date, as.Date.numeric
---
>     as.Date
35,39c49,55
< Geospatial Data Abstraction Library extensions to R successfully loaded
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/proj
---
> 
> Attaching package: 'akima'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     interp
> 
46a63
> There were 12 warnings (use warnings() to see them)
101c118
<                                     NA's   :2                             
---
>                                     NA's   : 2.000                        
  Running 'findRegionalBias.R'
  Comparing 'findRegionalBias.Rout' to 'findRegionalBias.Rout.save' ...5,7d4
< Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
< This is mgcv 1.7-17. For overview type 'help("mgcv-package")'.
< deldir 0.0-19
9,12c6,10
<      PLEASE NOTE:  The components "delsgs" and "summary" of the 
<      object returned by deldir() are now DATA FRAMES rather than 
<      matrices (as they were prior to release 0.0-18). 
<      See help("deldir").
---
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
14c12,21
<      PLEASE NOTE: The process for determining duplicated points
---
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
> Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
> 
>      Please note: The process for determining duplicated points
17c24
< spatstat 1.27-0 
---
> spatstat 1.24-1 
21a29,35
> Attaching package: 'spatstat'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     rescale
> 
> 
26c40
<     as.Date, as.Date.numeric
---
>     as.Date
35,39c49,55
< Geospatial Data Abstraction Library extensions to R successfully loaded
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/proj
---
> 
> Attaching package: 'akima'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     interp
> 
46a63
> There were 12 warnings (use warnings() to see them)
91,93c108,110
< x3  8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996583 0.06706801
< x4  5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430784 0.04975117
< x5  4  0.099305510 0.08948375  1.10976021 0.38266270  0.081768042 0.07854582
---
> x3  8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996582 0.06706801
> x4  5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430783 0.04975117
> x5  4  0.099305510 0.08948375  1.10976021 0.38266270  0.081768041 0.07854582
99c116
< x2  -5.8387562 0.02810256
---
> x2  -5.8387563 0.02810256
  Running 'optimizingTest.R'
  Comparing 'optimizingTest.Rout' to 'optimizingTest.Rout.save' ...7,9d6
< Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
< This is mgcv 1.7-17. For overview type 'help("mgcv-package")'.
< deldir 0.0-19
11,14c8,12
<      PLEASE NOTE:  The components "delsgs" and "summary" of the 
<      object returned by deldir() are now DATA FRAMES rather than 
<      matrices (as they were prior to release 0.0-18). 
<      See help("deldir").
---
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
16c14,23
<      PLEASE NOTE: The process for determining duplicated points
---
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
> Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
> 
>      Please note: The process for determining duplicated points
19c26
< spatstat 1.27-0 
---
> spatstat 1.24-1 
23a31,37
> Attaching package: 'spatstat'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     rescale
> 
> 
28c42
<     as.Date, as.Date.numeric
---
>     as.Date
37,41c51,57
< Geospatial Data Abstraction Library extensions to R successfully loaded
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/proj
---
> 
> Attaching package: 'akima'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     interp
> 
48a65
> There were 12 warnings (use warnings() to see them)
77c94
< [1] 116.2338
---
> [1] 116.2612
132c149
< [1] 116.3482
---
> [1] 116.3774
182,186c199,201
< [1] 115.4555
< Warning messages:
< 1: 2 location(s) outside the target universe (as defined by 'object') have been found
< These locations have been removed. 198 location(s) have been retained 
< 2: (Nearly) coinciding points have been removed.  
---
> [1] 115.505
> Warning message:
> (Nearly) coinciding points have been removed.  
208c223
< [1] 116.2338
---
> [1] 116.2612
212c227
< [1] 116.3482
---
> [1] 116.3774
219c234
< [1] 115.4555
---
> [1] 115.505
** running tests for arch 'x64' OK
  Running 'anisotropyChoice.R'
  Comparing 'anisotropyChoice.Rout' to 'anisotropyChoice.Rout.save' ...4,6d3
< Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
< This is mgcv 1.7-17. For overview type 'help("mgcv-package")'.
< deldir 0.0-19
8,11c5,9
<      PLEASE NOTE:  The components "delsgs" and "summary" of the 
<      object returned by deldir() are now DATA FRAMES rather than 
<      matrices (as they were prior to release 0.0-18). 
<      See help("deldir").
---
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
13c11,20
<      PLEASE NOTE: The process for determining duplicated points
---
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
> Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
> 
>      Please note: The process for determining duplicated points
16c23
< spatstat 1.27-0 
---
> spatstat 1.24-1 
20a28,34
> Attaching package: 'spatstat'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     rescale
> 
> 
25c39
<     as.Date, as.Date.numeric
---
>     as.Date
34,38c48,54
< Geospatial Data Abstraction Library extensions to R successfully loaded
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/proj
---
> 
> Attaching package: 'akima'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     interp
> 
45a62
> There were 12 warnings (use warnings() to see them)
  Running 'biasCorr.R'
  Comparing 'biasCorr.Rout' to 'biasCorr.Rout.save' ...4,6d3
< Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
< This is mgcv 1.7-17. For overview type 'help("mgcv-package")'.
< deldir 0.0-19
8,11c5,9
<      PLEASE NOTE:  The components "delsgs" and "summary" of the 
<      object returned by deldir() are now DATA FRAMES rather than 
<      matrices (as they were prior to release 0.0-18). 
<      See help("deldir").
---
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
13c11,20
<      PLEASE NOTE: The process for determining duplicated points
---
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
> Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
> 
>      Please note: The process for determining duplicated points
16c23
< spatstat 1.27-0 
---
> spatstat 1.24-1 
20a28,34
> Attaching package: 'spatstat'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     rescale
> 
> 
25c39
<     as.Date, as.Date.numeric
---
>     as.Date
34,38c48,54
< Geospatial Data Abstraction Library extensions to R successfully loaded
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/proj
---
> 
> Attaching package: 'akima'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     interp
> 
45a62
> There were 12 warnings (use warnings() to see them)
  Running 'findLocalBias.R'
  Comparing 'findLocalBias.Rout' to 'findLocalBias.Rout.save' ...5,7d4
< Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
< This is mgcv 1.7-17. For overview type 'help("mgcv-package")'.
< deldir 0.0-19
9,12c6,10
<      PLEASE NOTE:  The components "delsgs" and "summary" of the 
<      object returned by deldir() are now DATA FRAMES rather than 
<      matrices (as they were prior to release 0.0-18). 
<      See help("deldir").
---
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
14c12,21
<      PLEASE NOTE: The process for determining duplicated points
---
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
> Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
> 
>      Please note: The process for determining duplicated points
17c24
< spatstat 1.27-0 
---
> spatstat 1.24-1 
21a29,35
> Attaching package: 'spatstat'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     rescale
> 
> 
26c40
<     as.Date, as.Date.numeric
---
>     as.Date
35,39c49,55
< Geospatial Data Abstraction Library extensions to R successfully loaded
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/proj
---
> 
> Attaching package: 'akima'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     interp
> 
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> There were 12 warnings (use warnings() to see them)
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<                                     NA's   :2                             
---
>                                     NA's   : 2.000                        
  Running 'findRegionalBias.R'
  Comparing 'findRegionalBias.Rout' to 'findRegionalBias.Rout.save' ...5,7d4
< Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
< This is mgcv 1.7-17. For overview type 'help("mgcv-package")'.
< deldir 0.0-19
9,12c6,10
<      PLEASE NOTE:  The components "delsgs" and "summary" of the 
<      object returned by deldir() are now DATA FRAMES rather than 
<      matrices (as they were prior to release 0.0-18). 
<      See help("deldir").
---
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
14c12,21
<      PLEASE NOTE: The process for determining duplicated points
---
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
> Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
> 
>      Please note: The process for determining duplicated points
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< spatstat 1.27-0 
---
> spatstat 1.24-1 
21a29,35
> Attaching package: 'spatstat'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     rescale
> 
> 
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<     as.Date, as.Date.numeric
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>     as.Date
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< Geospatial Data Abstraction Library extensions to R successfully loaded
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/proj
---
> 
> Attaching package: 'akima'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     interp
> 
46a63
> There were 12 warnings (use warnings() to see them)
  Running 'optimizingTest.R'
  Comparing 'optimizingTest.Rout' to 'optimizingTest.Rout.save' ...7,9d6
< Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
< This is mgcv 1.7-17. For overview type 'help("mgcv-package")'.
< deldir 0.0-19
11,14c8,12
<      PLEASE NOTE:  The components "delsgs" and "summary" of the 
<      object returned by deldir() are now DATA FRAMES rather than 
<      matrices (as they were prior to release 0.0-18). 
<      See help("deldir").
---
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
16c14,23
<      PLEASE NOTE: The process for determining duplicated points
---
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
> Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
> Note: 'spcosa' requires Java (>= 6.0), which is available at www.java.com
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
> 
>      Please note: The process for determining duplicated points
19c26
< spatstat 1.27-0 
---
> spatstat 1.24-1 
23a31,37
> Attaching package: 'spatstat'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     rescale
> 
> 
28c42
<     as.Date, as.Date.numeric
---
>     as.Date
37,41c51,57
< Geospatial Data Abstraction Library extensions to R successfully loaded
< Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
< Path to GDAL shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/gdal
< Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
< Path to PROJ.4 shared files: d:/temp/RtmpoRQ24S/RLIBS_177015ae7c17/rgdal/proj
---
> 
> Attaching package: 'akima'
> 
> The following object(s) are masked from 'package:ggplot2':
> 
>     interp
> 
48a65
> There were 12 warnings (use warnings() to see them)
77c94
< [1] 116.2338
---
> [1] 116.2612
132c149
< [1] 116.3482
---
> [1] 116.3774
182,186c199,201
< [1] 115.4555
< Warning messages:
< 1: 2 location(s) outside the target universe (as defined by 'object') have been found
< These locations have been removed. 198 location(s) have been retained 
< 2: (Nearly) coinciding points have been removed.  
---
> [1] 115.505
> Warning message:
> (Nearly) coinciding points have been removed.  
208c223
< [1] 116.2338
---
> [1] 116.2612
212c227
< [1] 116.3482
---
> [1] 116.3774
219c234
< [1] 115.4555
---
> [1] 115.505
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
  'd:/Rcompile/CRANpkg/local/2.15/intamapInteractive.Rcheck/00check.log'
for details.