* using log directory 'd:/Rcompile/CRANpkg/local/2.15/rTOFsPRO.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'rTOFsPRO/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'rTOFsPRO' version '1.4.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... NOTE As from R 2.14.0 all packages need a namespace. One will be generated on installation, but it is better to handcraft a NAMESPACE file: R CMD build will produce a suitable starting point. CRAN requires a NAMESPACE file for all submissions. * checking whether package 'rTOFsPRO' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE mainRTOFsPROc: no visible binding for global variable 'TOFfileDIR' mainRTOFsPROc: no visible binding for global variable 'monitorMemory' mainRTOFsPROc: no visible binding for global variable 'averageOnly' mainRTOFsPROc: no visible binding for global variable 'rTofFileNames' mainRTOFsPROc: no visible binding for global variable 'rTofMetaFileNames' mainRTOFsPROc: no visible binding for global variable 'osS' mainRTOFsPROc: no visible binding for global variable 'paMethod' mainRTOFsPROc: no visible binding for global variable 'detect' mainRTOFsPROc: no visible binding for global variable 'bsS' mainRTOFsPROc: no visible binding for global variable 'mCH' mainRTOFsPROc: no visible binding for global variable 'pikw0' mainRTOFsPROc: no visible binding for global variable 'noiseThres' mainRTOFsPROc: no visible binding for global variable 'startS' mainRTOFsPROc: no visible binding for global variable 'endS' mainRTOFsPROc: no visible binding for global variable 'appli' mainRTOFsPROc: no visible binding for global variable 'bsMethod' mainRTOFsPROc: no visible binding for global variable 'amp' mainRTOFsPROc: no visible binding for global variable 'decay' mainRTOFsPROc: no visible binding for global variable 'useMeta' mainRTOFsPROc: no visible binding for global variable 'nDelay' mainRTOFsPROc: no visible binding for global variable 'A' mainRTOFsPROc: no visible binding for global variable 'B' mainRTOFsPROc: no visible binding for global variable 'instrPrc' mainRTOFsPROc: no visible binding for global variable 'p1' mainRTOFsPROc: no visible binding for global variable 'p2' mainRTOFsPROc: no visible binding for global variable 'p3' mainRTOFsPROc: no visible binding for global variable 'mpikw' mainRTOFsPROc: no visible binding for global variable 'lasym0' mainRTOFsPROc: no visible binding for global variable 'Gnoise' mainRTOFsPROc: no visible binding for global variable 'algo' mainRTOFsPROc: no visible binding for global variable 'nsdepBS' mainRTOFsPROc: no visible binding for global variable 'prMethod' mainRTOFsPROc: no visible binding for global variable 'nf' mainRTOFsPROc: no visible binding for global variable 'saveOut' mainRTOFsPROc: no visible binding for global variable 'ppMethod' mainRTOFsPROc: no visible binding for global variable 'snr' mainRTOFsPROc: no visible binding for global variable 'startPP' mainRTOFsPROc: no visible binding for global variable 'alMethod' mainRTOFsPROc: no visible binding for global variable 'noPL' mainRTOFsPROc: no visible binding for global variable 'tStart' mainRTOFsPROc: no visible binding for global variable 'tEnd' mainRTOFsPROc: no visible binding for global variable 'align2Training' mainRTOFsPROc: no visible binding for global variable 'aplTrainFileName' mainRTOFsPROc: no visible binding for global variable 'aplTrain' mainRTOFsPROc: no visible binding for global variable 'maxShift' mainRTOFsPROc: no visible binding for global variable 'alPeakDomain' mainRTOFsPROc: no visible binding for global variable 'save4Mlb' mainRTOFsPROcModular: no visible binding for global variable 'TOFfileDIR' mainRTOFsPROcModular: no visible binding for global variable 'monitorMemory' mainRTOFsPROcModular: no visible binding for global variable 'averageOnly' mainRTOFsPROcModular: no visible binding for global variable 'rTofFileNames' mainRTOFsPROcModular: no visible binding for global variable 'dbgmode' mainRTOFsPROcModular: no visible binding for global variable 'rTofMetaFileNames' mainRTOFsPROcModular: no visible binding for global variable 'osS' mainRTOFsPROcModular: no visible binding for global variable 'paMethod' mainRTOFsPROcModular: no visible binding for global variable 'detect' mainRTOFsPROcModular: no visible binding for global variable 'bsS' mainRTOFsPROcModular: no visible binding for global variable 'mCH' mainRTOFsPROcModular: no visible binding for global variable 'pikw0' mainRTOFsPROcModular: no visible binding for global variable 'noiseThres' mainRTOFsPROcModular: no visible binding for global variable 'startS' mainRTOFsPROcModular: no visible binding for global variable 'endS' mainRTOFsPROcModular: no visible binding for global variable 'appli' mainRTOFsPROcModular: no visible binding for global variable 'bsMethod' mainRTOFsPROcModular: no visible binding for global variable 'amp' mainRTOFsPROcModular: no visible binding for global variable 'decay' mainRTOFsPROcModular: no visible binding for global variable 'useMeta' mainRTOFsPROcModular: no visible binding for global variable 'nDelay' mainRTOFsPROcModular: no visible binding for global variable 'A' mainRTOFsPROcModular: no visible binding for global variable 'B' mainRTOFsPROcModular: no visible binding for global variable 'instrPrc' mainRTOFsPROcModular: no visible binding for global variable 'p1' mainRTOFsPROcModular: no visible binding for global variable 'p2' mainRTOFsPROcModular: no visible binding for global variable 'p3' mainRTOFsPROcModular: no visible binding for global variable 'mpikw' mainRTOFsPROcModular: no visible binding for global variable 'lasym0' mainRTOFsPROcModular: no visible binding for global variable 'Gnoise' mainRTOFsPROcModular: no visible binding for global variable 'algo' mainRTOFsPROcModular: no visible binding for global variable 'nsdepBS' mainRTOFsPROcModular: no visible binding for global variable 'backIntr' mainRTOFsPROcModular: no visible binding for global variable 'saveOut' mainRTOFsPROcModular: no visible binding for global variable 'prMethod' mainRTOFsPROcModular: no visible binding for global variable 'nf' mainRTOFsPROcModular: no visible binding for global variable 'ppMethod' mainRTOFsPROcModular: no visible binding for global variable 'snr' mainRTOFsPROcModular: no visible binding for global variable 'startPP' mainRTOFsPROcModular: no visible binding for global variable 'alMethod' mainRTOFsPROcModular: no visible binding for global variable 'noPL' mainRTOFsPROcModular: no visible binding for global variable 'tStart' mainRTOFsPROcModular: no visible binding for global variable 'tEnd' mainRTOFsPROcModular: no visible binding for global variable 'align2Training' mainRTOFsPROcModular: no visible binding for global variable 'aplTrainFileName' mainRTOFsPROcModular: no visible binding for global variable 'aplTrain' mainRTOFsPROcModular: no visible binding for global variable 'maxShift' mainRTOFsPROcModular: no visible binding for global variable 'alPeakDomain' mainRTOFsPROcModular: no visible binding for global variable 'save4Mlb' * checking Rd files ... NOTE prepare_Rd: mainRTOFsPROcModular.Rd:98: Dropping empty section \seealso * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK NOTE: There were 3 notes. See 'd:/Rcompile/CRANpkg/local/2.15/rTOFsPRO.Rcheck/00check.log' for details.