* using log directory 'd:/Rcompile/CRANpkg/local/2.15/surveillance.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'surveillance/DESCRIPTION' ... OK
* this is package 'surveillance' version '1.2-1'
* package encoding: latin1
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
* checking whether package 'surveillance' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'surveillance/R/zzz.R':
  .First.lib calls:
    library(spc)
    library(maptools)
    library(msm)

Package startup functions should not change the search path.
See section 'Good practice' in ?.onAttach.

aggregate.disProg: warning in apply(x$observed, MAR = 1, sum): partial
  argument match of 'MAR' to 'MARGIN'
aggregate.disProg: warning in apply(x$state, MAR = 1, sum): partial
  argument match of 'MAR' to 'MARGIN'
hcl.colors: warning in heat_hcl(ncolors, h = c(0, 120), c = c(90, 30),
  l = c(50, 90), power = c(0.75, 1.2)): partial argument match of 'c'
  to 'c.'
hcl.colors: warning in heat_hcl(ncolors, h = c(0, 120), c = 0, l =
  c(50, 90), power = c(0.75, 1.2)): partial argument match of 'c' to
  'c.'
init.sts: warning in ts(matrix(rep(state, nAreas), ncol = nAreas, byrow
  = FALSE), freq = frequency(observed)): partial argument match of
  'freq' to 'frequency'
sumNeighbours: warning in apply(observed[, disProgObj$neighbourhood[,
  i] == 1], MAR = 1, sum): partial argument match of 'MAR' to 'MARGIN'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File 'd:/Rcompile/CRANpkg/lib/2.15/surveillance/libs/i386/surveillance.dll':
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
    Object: 'twins.o'
File 'd:/Rcompile/CRANpkg/lib/2.15/surveillance/libs/x64/surveillance.dll':
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
    Object: 'twins.o'

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking for left-overs from vignette generation ... WARNING
  file 'inst/doc/Rplots.ps', 'inst/doc/Rplots.pdf' will not be installed: please remove it
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... NOTE
The following files should probably not be installed:
  'apalike.bst', 'chicago.bst', 'comment.sty', 'natbib.sty',
  'pdftricks.sty'
The following directories should probably not be installed:
  'figs'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'doRUnit.R'
** running tests for arch 'x64' OK
  Running 'doRUnit.R'
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 4 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/surveillance.Rcheck/00check.log'
for details.