CRAN Package Check Results for Package AIM

Last updated on 2014-04-24 15:50:33.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.01 0.88 38.40 39.28 NOTE
r-devel-linux-x86_64-debian-gcc 1.01 0.78 38.36 39.14 NOTE
r-devel-linux-x86_64-fedora-clang 1.01 88.45 NOTE
r-devel-linux-x86_64-fedora-gcc 1.01 82.69 NOTE
r-devel-osx-x86_64-clang 1.01 70.67 NOTE
r-devel-osx-x86_64-gcc 1.01 NOTE
r-devel-windows-ix86+x86_64 1.01 3.00 59.00 62.00 NOTE
r-patched-linux-x86_64 1.01 0.78 38.93 39.72 NOTE
r-patched-solaris-sparc 1.01 469.80 NOTE
r-patched-solaris-x86 1.01 119.00 NOTE
r-release-linux-ix86 1.01 2.00 71.00 73.00 NOTE
r-release-linux-x86_64 1.01 0.78 39.72 40.50 NOTE
r-release-osx-x86_64-mavericks 1.01 WARN
r-release-windows-ix86+x86_64 1.01 5.00 86.00 91.00 NOTE
r-oldrel-windows-ix86+x86_64 1.01 3.00 69.00 72.00 NOTE

Check Details

Version: 1.01
Check: DESCRIPTION meta-information
Result: NOTE
    Package listed in more than one of Depends, Imports, Suggests, Enhances:
     ‘survival’
    A package should be listed in only one of these fields.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.01
Check: R code for possible problems
Result: NOTE
    backfit.logistic.interaction: warning in glm(y ~ trt, family =
     "binomial", weight = wt): partial argument match of 'weight' to
     'weights'
    backfit.logistic.main: warning in glm(y ~ 1, family = "binomial",
     weight = wt): partial argument match of 'weight' to 'weights'
    logistic.interaction: warning in glm(y ~ trt, family = "binomial",
     weight = wt): partial argument match of 'weight' to 'weights'
    logistic.main: warning in glm(y ~ 1, family = "binomial", weight = wt):
     partial argument match of 'weight' to 'weights'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.01
Check: Rd line widths
Result: NOTE
    Rd file 'cox.interaction.Rd':
     \examples lines wider than 100 characters:
     ## compute the index based on the 2nd model of the sequence using new data xx, and compare the result with the true index
    
    Rd file 'cox.main.Rd':
     \examples lines wider than 100 characters:
     ## compute the index based on the 2nd model of the sequence using new data xx, and compare the result with the true index
    
    Rd file 'cv.cox.interaction.Rd':
     \usage lines wider than 90 characters:
     cv.cox.interaction(x, trt, y, status, K.cv=5, num.replicate=1, nsteps, mincut=0.1, backfit=F, maxnumcut=1, dirp=0)
    
    Rd file 'cv.cox.main.Rd':
     \usage lines wider than 90 characters:
     cv.cox.main(x, y, status, K.cv=5, num.replicate=1, nsteps, mincut=0.1, backfit=F, maxnumcut=1, dirp=0)
    
    Rd file 'cv.lm.interaction.Rd':
     \usage lines wider than 90 characters:
     cv.lm.interaction(x, trt, y, K.cv=5, num.replicate=1, nsteps, mincut=0.1, backfit=F, maxnumcut=1, dirp=0)
    
    Rd file 'cv.lm.main.Rd':
     \usage lines wider than 90 characters:
     cv.lm.main(x, y, K.cv=5, num.replicate=1, nsteps, mincut=0.1, backfit=F, maxnumcut=1, dirp=0)
    
    Rd file 'cv.logistic.interaction.Rd':
     \usage lines wider than 90 characters:
     cv.logistic.interaction(x, trt, y, K.cv=5, num.replicate=1, nsteps, mincut=0.1, backfit=F, maxnumcut=1, dirp=0, weight=1)
    
    Rd file 'cv.logistic.main.Rd':
     \usage lines wider than 90 characters:
     cv.logistic.main(x, y, K.cv=5, num.replicate=1, nsteps, mincut=0.1, backfit=F, maxnumcut=1, dirp=0, weight=1)
    
    Rd file 'index.prediction.Rd':
     \examples lines wider than 100 characters:
     ## compute the index based on the 2nd model of the sequence using new data xx, and compare the result with the true index
    
    Rd file 'lm.interaction.Rd':
     \examples lines wider than 100 characters:
     ## compute the index based on the 2nd model of the sequence using new data xx, and compare the result with the true index
    
    Rd file 'lm.main.Rd':
     \examples lines wider than 100 characters:
     ## compute the index based on the 2nd model of the sequence using new data xx, and compare the result with the true index
    
    Rd file 'logistic.interaction.Rd':
     \usage lines wider than 90 characters:
     logistic.interaction(x, trt, y, nsteps=8, mincut=.1, backfit=F, maxnumcut=1, dirp=0, weight=1)
     \examples lines wider than 100 characters:
     ## compute the index based on the 2nd model of the sequence using new data xx, and compare the result with the true index
    
    Rd file 'logistic.main.Rd':
     \examples lines wider than 100 characters:
     ## compute the index based on the 2nd model of the sequence using new data xx, and compare the result with the true index
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.01
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    74d9f8a/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks