CRAN Package Check Results for Package ARTIVA

Last updated on 2015-08-04 06:47:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.3 1.27 20.08 21.35 NOTE
r-devel-linux-x86_64-debian-gcc 1.2.3 1.35 20.13 21.48 NOTE
r-devel-linux-x86_64-fedora-clang 1.2.3 41.41 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.3 39.03 NOTE
r-devel-osx-x86_64-clang 1.2.3 38.74 OK
r-devel-windows-ix86+x86_64 1.2.3 7.00 32.00 39.00 NOTE
r-patched-linux-x86_64 1.2.3 3.30 20.44 23.73 OK
r-patched-solaris-sparc 1.2.3 269.80 OK
r-patched-solaris-x86 1.2.3 59.10 OK
r-release-linux-x86_64 1.2.3 3.26 20.34 23.60 OK
r-release-osx-x86_64-mavericks 1.2.3 OK
r-release-windows-ix86+x86_64 1.2.3 7.00 34.00 41.00 OK
r-oldrel-windows-ix86+x86_64 1.2.3 8.00 42.00 50.00 OK

Check Details

Version: 1.2.3
Check: R code for possible problems
Result: NOTE
    ARTIVAnet: no visible global function definition for ‘write.table’
    ARTIVAnet: no visible global function definition for ‘pdf’
    ARTIVAnet: no visible global function definition for ‘par’
    ARTIVAnet: no visible global function definition for ‘dev.off’
    ARTIVAsubnet: no visible global function definition for ‘pdf.options’
    ARTIVAsubnet: no visible global function definition for ‘write.table’
    ARTIVAsubnetAnalysis: no visible global function definition for
     ‘write.table’
    ARTIVAsubnetAnalysis: no visible global function definition for ‘pdf’
    ARTIVAsubnetAnalysis: no visible global function definition for ‘par’
    ARTIVAsubnetAnalysis: no visible global function definition for
     ‘dev.off’
    PSRF: no visible binding for global variable ‘var’
    PlotFunction: no visible global function definition for ‘plot’
    bdu: no visible global function definition for ‘runif’
    choosePriors: no visible global function definition for ‘par’
    choosePriors: no visible global function definition for ‘plot’
    cp.birth: no visible global function definition for ‘rgamma’
    cp.birth: no visible global function definition for ‘runif’
    cp.death: no visible global function definition for ‘runif’
    cp.shift: no visible global function definition for ‘runif’
    geneNetworkSummary: no visible global function definition for ‘title’
    main: no visible global function definition for ‘rgamma’
    main: no visible global function definition for ‘runif’
    plotCP.postDist: no visible global function definition for ‘par’
    plotCP.postDist: no visible global function definition for ‘barplot’
    plotCP.postDist: no visible global function definition for ‘abline’
    plotCP.postDist: no visible global function definition for ‘plot’
    plotSegmentModel.postDist: no visible global function definition for
     ‘par’
    plotSegmentModel.postDist: no visible global function definition for
     ‘barplot’
    plotSegmentModel.postDist: no visible global function definition for
     ‘title’
    plotSegmentModel.postDist: no visible global function definition for
     ‘abline’
    readInput: no visible global function definition for ‘read.table’
    rinvgamma: no visible global function definition for ‘rgamma’
    sampleBinit: no visible global function definition for ‘rnorm’
    sampleParms: no visible global function definition for ‘rgamma’
    segment.update: no visible global function definition for ‘rgamma’
    segment.update: no visible global function definition for ‘runif’
    traceGeneProfiles: no visible global function definition for ‘par’
    traceGeneProfiles: no visible global function definition for ‘plot’
    traceGeneProfiles: no visible global function definition for ‘lines’
    traceGeneProfiles: no visible global function definition for ‘axis’
    traceNetworks: no visible global function definition for ‘par’
    traceNetworks: no visible global function definition for ‘legend’
    Undefined global functions or variables:
     abline axis barplot dev.off legend lines par pdf pdf.options plot
     read.table rgamma rnorm runif title var write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf", "pdf.options")
     importFrom("graphics", "abline", "axis", "barplot", "legend", "lines",
     "par", "plot", "title")
     importFrom("stats", "rgamma", "rnorm", "runif", "var")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64