CRAN Package Check Results for Package AquaEnv

Last updated on 2015-08-01 03:48:44.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-3 1.12 22.44 23.55 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-3 0.99 23.19 24.18 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-3 45.54 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-3 42.73 NOTE
r-devel-osx-x86_64-clang 1.0-3 33.45 NOTE
r-devel-windows-ix86+x86_64 1.0-3 4.00 31.00 35.00 NOTE
r-patched-linux-x86_64 1.0-3 0.97 22.51 23.48 NOTE
r-patched-solaris-sparc 1.0-3 237.90 NOTE
r-patched-solaris-x86 1.0-3 50.70 NOTE
r-release-linux-x86_64 1.0-3 1.00 24.48 25.47 NOTE
r-release-osx-x86_64-mavericks 1.0-3 NOTE
r-release-windows-ix86+x86_64 1.0-3 6.00 34.00 40.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0-3 5.00 32.00 37.00 NOTE

Check Details

Version: 1.0-3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0-3
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘deSolve’ ‘minpack.lm’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     as.data.frame.aquaenv c.aquaenv length.aquaenv merge.aquaenv
     plot.aquaenv
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘opendevice’
    Found the platform-specific device:
     ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    TAfit: no visible global function definition for ‘nls.lm.control’
    TAfit : residuals: no visible global function definition for
     ‘approxfun’
    TAfit : residuals: no visible global function definition for ‘plot’
    TAfit : residuals: no visible global function definition for ‘par’
    TAfit: no visible global function definition for ‘nls.lm’
    basicplot: no visible global function definition for ‘par’
    basicplot: no visible global function definition for ‘plot’
    bjerrumplot: no visible global function definition for ‘par’
    bjerrumplot: no visible global function definition for ‘plot’
    bjerrumplot: no visible global function definition for ‘legend’
    cumulativeplot: no visible global function definition for ‘par’
    cumulativeplot: no visible global function definition for ‘plot’
    cumulativeplot: no visible global function definition for ‘polygon’
    cumulativeplot: no visible global function definition for ‘legend’
    gauge_p: no visible global function definition for ‘uniroot’
    opendevice: no visible global function definition for ‘x11’
    opendevice: no visible global function definition for ‘postscript’
    opendevice: no visible global function definition for ‘pdf’
    plot.aquaenv: no visible global function definition for ‘dev.off’
    splitS_K_CO2: no visible global function definition for ‘uniroot’
    splitS_K_HCO3: no visible global function definition for ‘uniroot’
    Undefined global functions or variables:
     approxfun dev.off legend nls.lm nls.lm.control par pdf plot polygon
     postscript uniroot x11
    Consider adding
     importFrom("grDevices", "dev.off", "pdf", "postscript", "x11")
     importFrom("graphics", "legend", "par", "plot", "polygon")
     importFrom("stats", "approxfun", "uniroot")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0-3
Check: Rd line widths
Result: NOTE
    Rd file 'aquaenv.Rd':
     \usage lines wider than 90 characters:
     k_hf=NULL, k1k2="roy", khf="dickson", khso4="dickson", fCO2atm=0.000390, fO2atm=0.20946)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘opendevice’
    Found the platform-specific device:
     ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    TAfit: no visible global function definition for ‘nls.lm.control’
    TAfit: no visible global function definition for ‘nls.lm’
    Undefined global functions or variables:
     nls.lm nls.lm.control
Flavor: r-devel-osx-x86_64-clang

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    TAfit: no visible global function definition for 'nls.lm.control'
    TAfit : residuals: no visible global function definition for
     'approxfun'
    TAfit : residuals: no visible global function definition for 'plot'
    TAfit : residuals: no visible global function definition for 'par'
    TAfit: no visible global function definition for 'nls.lm'
    basicplot: no visible global function definition for 'par'
    basicplot: no visible global function definition for 'plot'
    bjerrumplot: no visible global function definition for 'par'
    bjerrumplot: no visible global function definition for 'plot'
    bjerrumplot: no visible global function definition for 'legend'
    cumulativeplot: no visible global function definition for 'par'
    cumulativeplot: no visible global function definition for 'plot'
    cumulativeplot: no visible global function definition for 'polygon'
    cumulativeplot: no visible global function definition for 'legend'
    gauge_p: no visible global function definition for 'uniroot'
    opendevice: no visible global function definition for 'x11'
    opendevice: no visible global function definition for 'postscript'
    opendevice: no visible global function definition for 'pdf'
    plot.aquaenv: no visible global function definition for 'dev.off'
    splitS_K_CO2: no visible global function definition for 'uniroot'
    splitS_K_HCO3: no visible global function definition for 'uniroot'
    Undefined global functions or variables:
     approxfun dev.off legend nls.lm nls.lm.control par pdf plot polygon
     postscript uniroot x11
    Consider adding
     importFrom("grDevices", "dev.off", "pdf", "postscript", "x11")
     importFrom("graphics", "legend", "par", "plot", "polygon")
     importFrom("stats", "approxfun", "uniroot")
    to your NAMESPACE.
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘opendevice’
    Found the platform-specific device:
     ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    TAfit: no visible global function definition for ‘nls.lm.control’
    TAfit: no visible global function definition for ‘nls.lm’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    TAfit: no visible global function definition for ‘nls.lm.control’
    TAfit: no visible global function definition for ‘nls.lm’
Flavors: r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64