CRAN Package Check Results for Package BCEA

Last updated on 2014-04-19 15:49:38.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-2 1.07 59.64 60.71 OK
r-devel-linux-x86_64-debian-gcc 2.0-2 1.00 60.60 61.60 OK
r-devel-linux-x86_64-fedora-clang 2.0-2 129.76 OK
r-devel-linux-x86_64-fedora-gcc 2.0-2 122.94 OK
r-devel-macosx-x86_64-clang 2.0-2 105.57 OK
r-devel-macosx-x86_64-gcc 2.0-2 ERROR
r-devel-windows-ix86+x86_64 2.0-2 3.00 83.00 86.00 OK
r-patched-linux-x86_64 2.0-2 0.98 56.36 57.34 OK
r-patched-solaris-sparc 2.0-2 783.20 OK
r-patched-solaris-x86 2.0-2 158.10 OK
r-release-linux-ix86 OK
r-release-linux-x86_64 2.0-2 1.04 58.11 59.15 OK
r-release-macosx-x86_64 2.0-2 OK
r-release-windows-ix86+x86_64 2.0-2 4.00 84.00 88.00 OK
r-oldrel-windows-ix86+x86_64 2.0-2 4.00 81.00 85.00 OK

Check Details

Version: 2.0-2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘ggplot2’
Flavor: r-devel-macosx-x86_64-gcc

Version: 2.0-2
Check: R code for possible problems
Result: NOTE
    ceac.plot: no visible global function definition for ‘ggplot’
    ceac.plot: no visible global function definition for ‘aes’
    ceac.plot: no visible global function definition for ‘geom_line’
    ceac.plot: no visible global function definition for
     ‘scale_linetype_manual’
    ceac.plot: no visible global function definition for ‘theme_bw’
    ceac.plot: no visible global function definition for
     ‘scale_y_continuous’
    ceac.plot: no visible global function definition for ‘labs’
    ceac.plot: no visible global function definition for ‘theme’
    ceac.plot: no visible global function definition for ‘element_blank’
    ceac.plot: no visible global function definition for ‘element_text’
    ceaf.plot: no visible global function definition for ‘ggplot’
    ceaf.plot: no visible global function definition for ‘theme_bw’
    ceaf.plot: no visible global function definition for ‘geom_line’
    ceaf.plot: no visible global function definition for ‘aes’
    ceaf.plot: no visible global function definition for ‘coord_cartesian’
    ceaf.plot: no visible global function definition for ‘theme’
    ceaf.plot: no visible global function definition for ‘element_text’
    ceaf.plot: no visible global function definition for ‘element_blank’
    ceaf.plot: no visible global function definition for ‘labs’
    ceplane.plot: no visible global function definition for ‘rel’
    ceplane.plot: no visible global function definition for ‘theme’
    ceplane.plot: no visible global function definition for ‘is.theme’
    ceplane.plot: no visible global function definition for ‘ggplot’
    ceplane.plot: no visible global function definition for ‘aes’
    ceplane.plot: no visible global function definition for ‘theme_bw’
    ceplane.plot: no visible global function definition for
     ‘scale_x_continuous’
    ceplane.plot: no visible global function definition for
     ‘scale_y_continuous’
    ceplane.plot: no visible global function definition for
     ‘scale_color_manual’
    ceplane.plot: no visible global function definition for ‘geom_line’
    ceplane.plot: no visible global function definition for ‘geom_polygon’
    ceplane.plot: no visible global function definition for ‘geom_hline’
    ceplane.plot: no visible global function definition for ‘geom_vline’
    ceplane.plot: no visible global function definition for ‘geom_point’
    ceplane.plot: no visible global function definition for ‘annotate’
    ceplane.plot: no visible global function definition for ‘labs’
    ceplane.plot: no visible global function definition for ‘element_blank’
    ceplane.plot: no visible global function definition for ‘element_text’
    contour.bcea: no visible global function definition for ‘ggplot’
    contour.bcea: no visible global function definition for ‘aes’
    contour.bcea: no visible global function definition for ‘geom_hline’
    contour.bcea: no visible global function definition for ‘geom_vline’
    contour.bcea: no visible global function definition for ‘theme_bw’
    contour.bcea: no visible global function definition for ‘geom_point’
    contour.bcea: no visible global function definition for
     ‘scale_x_continuous’
    contour.bcea: no visible global function definition for
     ‘scale_y_continuous’
    contour.bcea: no visible global function definition for ‘geom_contour’
    contour.bcea: no visible global function definition for
     ‘stat_density2d’
    contour.bcea: no visible global function definition for ‘geom_text’
    contour.bcea: no visible global function definition for ‘rel’
    contour.bcea: no visible global function definition for
     ‘scale_color_manual’
    contour.bcea: no visible global function definition for ‘guides’
    contour.bcea: no visible global function definition for ‘guide_legend’
    contour.bcea: no visible global function definition for ‘labs’
    contour.bcea: no visible global function definition for ‘theme’
    contour.bcea: no visible global function definition for ‘element_blank’
    contour.bcea: no visible global function definition for ‘element_text’
    contour2: no visible global function definition for ‘geom_contour’
    contour2: no visible global function definition for ‘aes’
    contour2: no visible global function definition for ‘coord_cartesian’
    eib.plot: no visible global function definition for ‘rel’
    eib.plot: no visible global function definition for ‘theme’
    eib.plot: no visible global function definition for ‘is.theme’
    eib.plot: no visible global function definition for ‘ggplot’
    eib.plot: no visible global function definition for ‘aes’
    eib.plot: no visible global function definition for ‘geom_line’
    eib.plot: no visible global function definition for ‘theme_bw’
    eib.plot: no visible global function definition for ‘geom_hline’
    eib.plot: no visible global function definition for ‘geom_vline’
    eib.plot: no visible global function definition for ‘annotate’
    eib.plot: no visible global function definition for
     ‘scale_linetype_manual’
    eib.plot: no visible global function definition for ‘labs’
    eib.plot: no visible global function definition for ‘element_blank’
    eib.plot: no visible global function definition for ‘element_text’
    evi.plot: no visible global function definition for ‘ggplot’
    evi.plot: no visible global function definition for ‘aes’
    evi.plot: no visible global function definition for ‘geom_line’
    evi.plot: no visible global function definition for ‘theme_bw’
    evi.plot: no visible global function definition for ‘labs’
    evi.plot: no visible global function definition for ‘theme’
    evi.plot: no visible global function definition for ‘element_text’
    evi.plot: no visible global function definition for ‘annotate’
    evi.plot: no visible global function definition for ‘element_blank’
    ib.plot: no visible global function definition for ‘ggplot’
    ib.plot: no visible global function definition for ‘aes’
    ib.plot: no visible global function definition for ‘theme_bw’
    ib.plot: no visible global function definition for ‘geom_vline’
    ib.plot: no visible global function definition for ‘geom_hline’
    ib.plot: no visible global function definition for ‘geom_ribbon’
    ib.plot: no visible global function definition for ‘geom_line’
    ib.plot: no visible global function definition for ‘annotate’
    ib.plot: no visible global function definition for ‘coord_cartesian’
    ib.plot: no visible global function definition for ‘theme’
    ib.plot: no visible global function definition for ‘element_text’
    ib.plot: no visible global function definition for ‘element_blank’
    ib.plot: no visible global function definition for ‘labs’
    mce.plot: no visible global function definition for ‘ggplot’
    mce.plot: no visible global function definition for ‘theme_bw’
    mce.plot: no visible global function definition for ‘geom_line’
    mce.plot: no visible global function definition for ‘aes’
    mce.plot: no visible global function definition for
     ‘scale_colour_manual’
    mce.plot: no visible global function definition for
     ‘scale_linetype_manual’
    mce.plot: no visible global function definition for ‘labs’
    mce.plot: no visible global function definition for ‘theme’
    mce.plot: no visible global function definition for ‘element_text’
    mce.plot: no visible global function definition for ‘element_blank’
    mce.plot: no visible global function definition for ‘coord_cartesian’
    plot.CEriskav: no visible global function definition for ‘ggplot’
    plot.CEriskav: no visible global function definition for ‘aes’
    plot.CEriskav: no visible global function definition for ‘geom_hline’
    plot.CEriskav: no visible global function definition for ‘geom_line’
    plot.CEriskav: no visible global function definition for
     ‘scale_linetype_manual’
    plot.CEriskav: no visible global function definition for ‘theme_bw’
    plot.CEriskav: no visible global function definition for ‘labs’
    plot.CEriskav: no visible global function definition for ‘theme’
    plot.CEriskav: no visible global function definition for ‘element_text’
    plot.CEriskav: no visible global function definition for
     ‘element_blank’
    plot.bcea: no visible global function definition for ‘theme’
    plot.bcea: no visible global function definition for ‘element_text’
    plot.bcea: no visible global function definition for ‘element_blank’
    plot.bcea: no visible global function definition for ‘is.theme’
    plot.mixedAn: no visible global function definition for ‘ggplot’
    plot.mixedAn: no visible global function definition for ‘theme_bw’
    plot.mixedAn: no visible global function definition for ‘geom_ribbon’
    plot.mixedAn: no visible global function definition for ‘aes’
    plot.mixedAn: no visible global function definition for ‘geom_line’
    plot.mixedAn: no visible global function definition for
     ‘coord_cartesian’
    plot.mixedAn: no visible global function definition for
     ‘scale_colour_manual’
    plot.mixedAn: no visible global function definition for ‘labs’
    plot.mixedAn: no visible global function definition for ‘theme’
    plot.mixedAn: no visible global function definition for ‘element_text’
    plot.mixedAn: no visible global function definition for ‘element_blank’
Flavor: r-devel-macosx-x86_64-gcc

Version: 2.0-2
Check: examples
Result: ERROR
    Running examples in ‘BCEA-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plot.bcea
    > ### Title: Summary plot of the health economic analysis
    > ### Aliases: plot.bcea
    > ### Keywords: Health economic evaluation
    >
    > ### ** Examples
    >
    > # See Baio G., Dawid A.P. (2011) for a detailed description of the
    > # Bayesian model and economic problem
    > #
    > # Load the processed results of the MCMC simulation model
    > data(Vaccine)
    > #
    > # Runs the health economic evaluation using BCEA
    > m <- bcea(e=e,c=c, # defines the variables of
    + # effectiveness and cost
    + ref=2, # selects the 2nd row of (e,c)
    + # as containing the reference intervention
    + interventions=treats, # defines the labels to be associated
    + # with each intervention
    + Kmax=50000, # maximum value possible for the willingness
    + # to pay threshold; implies that k is chosen
    + # in a grid from the interval (0,Kmax)
    + plot=FALSE # does not produce graphical outputs
    + )
    > #
    > # Plots the summary plots for the "bcea" object m using base graphics
    > plot(m,graph="base")
    Warning in text.default(M.e, M.c, paste("•", " ICER=", format(he$ICER, :
     conversion failure on '• ICER=20097.59' in 'mbcsToSbcs': dot substituted for <e2>
    Warning in text.default(M.e, M.c, paste("•", " ICER=", format(he$ICER, :
     conversion failure on '• ICER=20097.59' in 'mbcsToSbcs': dot substituted for <80>
    Warning in text.default(M.e, M.c, paste("•", " ICER=", format(he$ICER, :
     conversion failure on '• ICER=20097.59' in 'mbcsToSbcs': dot substituted for <a2>
    Warning in text.default(M.e, M.c, paste("•", " ICER=", format(he$ICER, :
     conversion failure on '• ICER=20097.59' in 'mbcsToSbcs': dot substituted for <e2>
    Warning in text.default(M.e, M.c, paste("•", " ICER=", format(he$ICER, :
     conversion failure on '• ICER=20097.59' in 'mbcsToSbcs': dot substituted for <80>
    Warning in text.default(M.e, M.c, paste("•", " ICER=", format(he$ICER, :
     conversion failure on '• ICER=20097.59' in 'mbcsToSbcs': dot substituted for <a2>
    >
    > #
    > # Plots the same summary plots using ggplot2
    > plot(m,graph="ggplot2")
    Loading required package: ggplot2
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘ggplot2’
    Loading required package: grid
    Error in plot.bcea(m, graph = "ggplot2") :
     could not find function "theme"
    Calls: plot -> plot.bcea
    Execution halted
Flavor: r-devel-macosx-x86_64-gcc