CRAN Package Check Results for Package BaM

Last updated on 2016-05-02 21:49:39.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 0.99 3.76 36.59 40.35 NOTE
r-devel-linux-x86_64-fedora-clang 0.99 81.26 NOTE
r-devel-linux-x86_64-fedora-gcc 0.99 75.42 NOTE
r-devel-osx-x86_64-clang 0.99 85.85 NOTE
r-devel-windows-ix86+x86_64 0.99 12.00 68.00 80.00 NOTE
r-patched-linux-x86_64 0.99 3.79 36.73 40.52 NOTE
r-patched-solaris-sparc 0.99 240.00 NOTE
r-patched-solaris-x86 0.99 103.20 NOTE
r-release-linux-x86_64 0.99 4.29 39.74 44.03 NOTE
r-release-osx-x86_64-mavericks 0.99 NOTE
r-release-windows-ix86+x86_64 0.99 11.00 90.00 101.00 NOTE
r-oldrel-windows-ix86+x86_64 0.99 27.00 122.00 149.00 NOTE

Check Details

Version: 0.99
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘bayesm’ ‘coda’ ‘MASS’ ‘mice’ ‘survival’ ‘foreign’ ‘nnet’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.99
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.99
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘CONTENTS’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.99
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     mhplot.walk.MH t.ci
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.99
Check: R code for possible problems
Result: NOTE
    biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
     chol(solve(Wp.inv))): unused argument (SqrtSigma =
     chol(solve(Wp.inv)))
    biv.norm.post: no visible global function definition for ‘rmultinorm’
    mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
     2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
     round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
     arguments (walk.mat[1, 2], type = "n", xlim = round(range(walk.mat[,
     1]) * 1.2), ylim = round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab
     = "")
    mhplot.walk.MH: no visible global function definition for ‘segments’
    romney: no visible global function definition for ‘par’
    romney: no visible global function definition for ‘plot’
    romney: no visible global function definition for ‘lines’
    romney: no visible global function definition for ‘segments’
    romney: no visible global function definition for ‘text’
    sir: no visible binding for global variable ‘normal.posterior.ll’
    sir: no visible binding for global variable ‘t.posterior.ll’
    walk.G: no visible global function definition for ‘plot’
    walk.G: no visible global function definition for ‘segments’
    Undefined global functions or variables:
     lines normal.posterior.ll par plot rmultinorm segments t.posterior.ll
     text
    Consider adding
     importFrom("graphics", "lines", "par", "plot", "segments", "text")
    to your NAMESPACE file.
    
    Found the following calls to data() loading into the global environment:
    File ‘BaM/R/china.wars.R’:
     data(wars)
    See section ‘Good practice’ in ‘?data’.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-linux-x86_64

Version: 0.99
Check: R code for possible problems
Result: NOTE
    biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
     chol(solve(Wp.inv))): unused argument (SqrtSigma =
     chol(solve(Wp.inv)))
    biv.norm.post: no visible global function definition for ‘rmultinorm’
    mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
     2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
     round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
     arguments (walk.mat[1, 2], type = "n", xlim = round(range(walk.mat[,
     1]) * 1.2), ylim = round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab
     = "")
    mhplot.walk.MH: no visible global function definition for ‘segments’
    romney: no visible global function definition for ‘par’
    romney: no visible global function definition for ‘plot’
    romney: no visible global function definition for ‘lines’
    romney: no visible global function definition for ‘segments’
    romney: no visible global function definition for ‘text’
    sir: no visible binding for global variable ‘normal.posterior.ll’
    sir: no visible binding for global variable ‘t.posterior.ll’
    walk.G: no visible global function definition for ‘plot’
    walk.G: no visible global function definition for ‘segments’
    Undefined global functions or variables:
     lines normal.posterior.ll par plot rmultinorm segments t.posterior.ll
     text
    Consider adding
     importFrom("graphics", "lines", "par", "plot", "segments", "text")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.99
Check: R code for possible problems
Result: NOTE
    biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
     chol(solve(Wp.inv))): unused argument (SqrtSigma =
     chol(solve(Wp.inv)))
    biv.norm.post: no visible global function definition for ‘rmultinorm’
    mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
     2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
     round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
     arguments (walk.mat[1, 2], type = "n", xlim = round(range(walk.mat[,
     1]) * 1.2), ylim = round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab
     = "")
    sir: no visible binding for global variable ‘normal.posterior.ll’
    sir: no visible binding for global variable ‘t.posterior.ll’
    
    Found the following calls to data() loading into the global environment:
    File ‘BaM/R/china.wars.R’:
     data(wars)
    See section ‘Good practice’ in ‘?data’.
Flavor: r-release-linux-x86_64

Version: 0.99
Check: R code for possible problems
Result: NOTE
    biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
     chol(solve(Wp.inv))): unused argument (SqrtSigma =
     chol(solve(Wp.inv)))
    biv.norm.post: no visible global function definition for ‘rmultinorm’
    mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
     2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
     round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
     arguments (walk.mat[1, 2], type = "n", xlim = round(range(walk.mat[,
     1]) * 1.2), ylim = round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab
     = "")
    sir: no visible binding for global variable ‘normal.posterior.ll’
    sir: no visible binding for global variable ‘t.posterior.ll’
Flavors: r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64