CRAN Package Check Results for Package BaM

Last updated on 2015-07-29 12:47:15.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.99 2.06 20.74 22.80 NOTE
r-devel-linux-x86_64-debian-gcc 0.99 2.06 19.38 21.44 NOTE
r-devel-linux-x86_64-fedora-clang 0.99 42.89 NOTE
r-devel-linux-x86_64-fedora-gcc 0.99 41.36 NOTE
r-devel-osx-x86_64-clang 0.99 41.45 NOTE
r-devel-windows-ix86+x86_64 0.99 8.00 32.00 40.00 NOTE
r-patched-linux-x86_64 0.99 2.17 19.34 21.50 NOTE
r-patched-solaris-sparc 0.99 277.20 NOTE
r-patched-solaris-x86 0.99 59.40 NOTE
r-release-linux-x86_64 0.99 2.06 19.34 21.40 NOTE
r-release-osx-x86_64-mavericks 0.99 NOTE
r-release-windows-ix86+x86_64 0.99 11.00 34.00 45.00 NOTE
r-oldrel-windows-ix86+x86_64 0.99 15.00 85.00 100.00 NOTE

Check Details

Version: 0.99
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘bayesm’ ‘coda’ ‘MASS’ ‘mice’ ‘survival’ ‘foreign’ ‘nnet’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.99
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.99
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘CONTENTS’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.99
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     mhplot.walk.MH t.ci
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.99
Check: R code for possible problems
Result: NOTE
    biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
     chol(solve(Wp.inv))): unused argument (SqrtSigma =
     chol(solve(Wp.inv)))
    biv.norm.post: no visible global function definition for ‘rmultinorm’
    mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
     2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
     round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
     arguments (walk.mat[1, 2], type = "n", xlim = round(range(walk.mat[,
     1]) * 1.2), ylim = round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab
     = "")
    mhplot.walk.MH: no visible global function definition for ‘segments’
    romney: no visible global function definition for ‘par’
    romney: no visible global function definition for ‘plot’
    romney: no visible global function definition for ‘lines’
    romney: no visible global function definition for ‘segments’
    romney: no visible global function definition for ‘text’
    sir: no visible binding for global variable ‘normal.posterior.ll’
    sir: no visible binding for global variable ‘t.posterior.ll’
    walk.G: no visible global function definition for ‘plot’
    walk.G: no visible global function definition for ‘segments’
    Undefined global functions or variables:
     lines normal.posterior.ll par plot rmultinorm segments t.posterior.ll
     text
    Consider adding
     importFrom("graphics", "lines", "par", "plot", "segments", "text")
    to your NAMESPACE.
    
    Found the following calls to data() loading into the global environment:
    File ‘BaM/R/china.wars.R’:
     data(wars)
    See section ‘Good practice’ in ‘?data’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang

Version: 0.99
Check: R code for possible problems
Result: NOTE
    biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
     chol(solve(Wp.inv))): unused argument (SqrtSigma =
     chol(solve(Wp.inv)))
    biv.norm.post: no visible global function definition for ‘rmultinorm’
    mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
     2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
     round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
     arguments (walk.mat[1, 2], type = "n", xlim = round(range(walk.mat[,
     1]) * 1.2), ylim = round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab
     = "")
    mhplot.walk.MH: no visible global function definition for ‘segments’
    romney: no visible global function definition for ‘par’
    romney: no visible global function definition for ‘plot’
    romney: no visible global function definition for ‘lines’
    romney: no visible global function definition for ‘segments’
    romney: no visible global function definition for ‘text’
    sir: no visible binding for global variable ‘normal.posterior.ll’
    sir: no visible binding for global variable ‘t.posterior.ll’
    walk.G: no visible global function definition for ‘plot’
    walk.G: no visible global function definition for ‘segments’
    Undefined global functions or variables:
     lines normal.posterior.ll par plot rmultinorm segments t.posterior.ll
     text
    Consider adding
     importFrom("graphics", "lines", "par", "plot", "segments", "text")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.99
Check: R code for possible problems
Result: NOTE
    biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
     chol(solve(Wp.inv))): unused argument (SqrtSigma =
     chol(solve(Wp.inv)))
    biv.norm.post: no visible global function definition for ‘rmultinorm’
    mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
     2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
     round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
     arguments (walk.mat[1, 2], type = "n", xlim = round(range(walk.mat[,
     1]) * 1.2), ylim = round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab
     = "")
    sir: no visible binding for global variable ‘normal.posterior.ll’
    sir: no visible binding for global variable ‘t.posterior.ll’
    Undefined global functions or variables:
     normal.posterior.ll rmultinorm t.posterior.ll
    
    Found the following calls to data() loading into the global environment:
    File ‘BaM/R/china.wars.R’:
     data(wars)
    See section ‘Good practice’ in ‘?data’.
Flavor: r-devel-osx-x86_64-clang

Version: 0.99
Check: R code for possible problems
Result: NOTE
    biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
     chol(solve(Wp.inv))): unused argument (SqrtSigma =
     chol(solve(Wp.inv)))
    biv.norm.post: no visible global function definition for ‘rmultinorm’
    mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
     2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
     round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
     arguments (walk.mat[1, 2], type = "n", xlim = round(range(walk.mat[,
     1]) * 1.2), ylim = round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab
     = "")
    sir: no visible binding for global variable ‘normal.posterior.ll’
    sir: no visible binding for global variable ‘t.posterior.ll’
    
    Found the following calls to data() loading into the global environment:
    File ‘BaM/R/china.wars.R’:
     data(wars)
    See section ‘Good practice’ in ‘?data’.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.99
Check: R code for possible problems
Result: NOTE
    biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
     chol(solve(Wp.inv))): unused argument (SqrtSigma =
     chol(solve(Wp.inv)))
    biv.norm.post: no visible global function definition for ‘rmultinorm’
    mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
     2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
     round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
     arguments (walk.mat[1, 2], type = "n", xlim = round(range(walk.mat[,
     1]) * 1.2), ylim = round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab
     = "")
    sir: no visible binding for global variable ‘normal.posterior.ll’
    sir: no visible binding for global variable ‘t.posterior.ll’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64