CRAN Package Check Results for Package BayHap

Last updated on 2014-04-24 17:49:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 1.41 23.88 25.28 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.1 1.91 24.28 26.19 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.1 47.71 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.1 46.44 NOTE
r-devel-osx-x86_64-clang 1.0.1 37.42 NOTE
r-devel-osx-x86_64-gcc 1.0.1 NOTE
r-devel-windows-ix86+x86_64 1.0.1 7.00 51.00 58.00 NOTE
r-patched-linux-x86_64 1.0.1 1.88 25.30 27.18 NOTE
r-patched-solaris-sparc 1.0.1 279.50 NOTE
r-patched-solaris-x86 1.0.1 66.40 NOTE
r-release-linux-ix86 1.0.1 3.00 41.00 44.00 NOTE
r-release-linux-x86_64 1.0.1 1.92 24.75 26.67 NOTE
r-release-osx-x86_64-mavericks 1.0.1 WARN
r-release-windows-ix86+x86_64 1.0.1 12.00 62.00 74.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0.1 7.00 50.00 57.00 NOTE

Check Details

Version: 1.0.1
Check: dependencies in R code
Result: NOTE
    Unexported object imported by a ':::' call: ‘boa:::boa.getparms’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.1
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following functions:
     ‘plotACF’ ‘plotDensity’ ‘plotRmean’ ‘plotTrace’
    Found the platform-specific device:
     ‘x11’ is the preferred way to open a new device, in the unlikely
    event one is needed.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.0.1
Check: Rd line widths
Result: NOTE
    Rd file 'BayHap-internal.Rd':
     \usage lines wider than 90 characters:
     expectedGenotypes(x, alleles = allele.names(x), ploidy = 2, sort = TRUE, haplotype = FALSE)
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.1
Check: PDF version of manual
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    c627302/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks