CRAN Package Check Results for Package BayHap

Last updated on 2014-10-23 00:47:53.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 1.60 24.56 26.17 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.1 1.84 24.20 26.04 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.1 49.44 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.1 46.76 NOTE
r-devel-osx-x86_64-clang 1.0.1 39.05 NOTE
r-devel-windows-ix86+x86_64 1.0.1 6.00 48.00 54.00 NOTE
r-patched-linux-x86_64 1.0.1 1.89 24.35 26.24 NOTE
r-patched-solaris-sparc 1.0.1 321.90 NOTE
r-patched-solaris-x86 1.0.1 66.60 NOTE
r-release-linux-ix86 1.0.1 2.46 32.49 34.96 NOTE
r-release-linux-x86_64 1.0.1 1.86 25.90 27.76 NOTE
r-release-osx-x86_64-mavericks 1.0.1 NOTE
r-release-windows-ix86+x86_64 1.0.1 9.00 57.00 66.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0.1 7.00 50.00 57.00 NOTE

Check Details

Version: 1.0.1
Check: dependencies in R code
Result: NOTE
    Unexported object imported by a ':::' call: ‘boa:::boa.getparms’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.1
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following functions:
     ‘plotACF’ ‘plotDensity’ ‘plotRmean’ ‘plotTrace’
    Found the platform-specific device:
     ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.0.1
Check: Rd line widths
Result: NOTE
    Rd file 'BayHap-internal.Rd':
     \usage lines wider than 90 characters:
     expectedGenotypes(x, alleles = allele.names(x), ploidy = 2, sort = TRUE, haplotype = FALSE)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.1
Check: compiled code
Result: NOTE
    File ‘BayHap/libs/BayHap.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Object: ‘mcmc.o’
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘mcmc.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.0.1
Check: compiled code
Result: NOTE
    File ‘BayHap/libs/BayHap.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Object: ‘mcmc.o’
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘mcmc.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 1.0.1
Check: compiled code
Result: NOTE
    File 'BayHap/libs/i386/BayHap.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'mcmc.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'mcmc.o'
    File 'BayHap/libs/x64/BayHap.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'mcmc.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'mcmc.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-ix86+x86_64