CRAN Package Check Results for Package BayesQTLBIC

Last updated on 2014-04-25 05:47:11.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-2 0.68 16.25 16.94 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-2 0.70 15.94 16.64 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-2 34.36 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-2 32.25 NOTE
r-devel-osx-x86_64-clang 1.0-2 32.65 NOTE
r-devel-osx-x86_64-gcc 1.0-2 NOTE
r-devel-windows-ix86+x86_64 1.0-2 3.00 28.00 31.00 NOTE
r-patched-linux-x86_64 1.0-2 0.72 16.36 17.08 NOTE
r-patched-solaris-sparc 1.0-2 182.40 NOTE
r-patched-solaris-x86 1.0-2 44.90 NOTE
r-release-linux-ix86 1.0-2 2.00 30.00 32.00 NOTE
r-release-linux-x86_64 1.0-2 0.68 16.35 17.03 NOTE
r-release-osx-x86_64-mavericks 1.0-2 WARN
r-release-windows-ix86+x86_64 1.0-2 4.00 36.00 40.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0-2 3.00 29.00 32.00 NOTE

Check Details

Version: 1.0-2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘leaps’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-2
Check: R code for possible problems
Result: NOTE
    bicreg.models: warning in lm(y ~ 1, weight = wt): partial argument
     match of 'weight' to 'weights'
    bicreg.models: warning in lsfit(rep(1, length(y)), y, wt = wt, int =
     FALSE): partial argument match of 'int' to 'intercept'
    bicreg.models: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
     argument match of 'nr' to 'nrow'
    bicreg.models: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
     argument match of 'nc' to 'ncol'
    bicreg.qtl: warning in lm(y ~ 1, w = wt): partial argument match of 'w'
     to 'weights'
    bicreg.qtl: warning in lm(y ~ . - wt, data = x.lm, w = wt): partial
     argument match of 'w' to 'weights'
    bicreg.qtl: warning in lsfit(rep(1, length(y)), y, wt = wt, int =
     FALSE): partial argument match of 'int' to 'intercept'
    bicreg.qtl: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
     argument match of 'nr' to 'nrow'
    bicreg.qtl: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
     argument match of 'nc' to 'ncol'
    bicreg2: warning in lm(y ~ 1, w = wt): partial argument match of 'w' to
     'weights'
    bicreg2: warning in lm(y ~ . - wt, data = x.lm, w = wt): partial
     argument match of 'w' to 'weights'
    bicreg2: warning in lsfit(rep(1, length(y)), y, wt = wt, int = FALSE):
     partial argument match of 'int' to 'intercept'
    bicreg2: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
     argument match of 'nr' to 'nrow'
    bicreg2: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
     argument match of 'nc' to 'ncol'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-2
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘examples’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0-2
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    25f1d2c/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks