CRAN Package Check Results for Package BayesTree

Last updated on 2014-04-24 07:52:23.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3-1.1 4.53 21.63 26.16 NOTE
r-devel-linux-x86_64-debian-gcc 0.3-1.1 5.13 22.12 27.26 NOTE
r-devel-linux-x86_64-fedora-clang 0.3-1.1 62.99 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3-1.1 54.92 NOTE
r-devel-osx-x86_64-clang 0.3-1.1 58.81 NOTE
r-devel-osx-x86_64-gcc 0.3-1.1 NOTE
r-devel-windows-ix86+x86_64 0.3-1.1 27.00 69.00 96.00 NOTE
r-patched-linux-x86_64 0.3-1.1 5.18 21.50 26.68 NOTE
r-patched-solaris-sparc 0.3-1.1 318.60 NOTE
r-patched-solaris-x86 0.3-1.1 95.60 NOTE
r-release-linux-ix86 0.3-1.1 9.00 39.00 48.00 NOTE
r-release-linux-x86_64 0.3-1.1 5.09 22.65 27.74 NOTE
r-release-osx-x86_64-mavericks 0.3-1.1 WARN
r-release-windows-ix86+x86_64 0.3-1.1 25.00 64.00 89.00 NOTE
r-oldrel-windows-ix86+x86_64 0.3-1.1 26.00 64.00 90.00 NOTE

Memtest notes: valgrind

Check Details

Version: 0.3-1.1
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘nnet’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BayesTree/libs/BayesTree.so’:
     Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
     Objects: ‘Lib.o’, ‘List.o’, ‘MuS.o’, ‘Node.o’, ‘mbart.o’
     Found ‘printf’, possibly from ‘printf’ (C)
     Objects: ‘List.o’, ‘Node.o’, ‘Rlob.o’
     Found ‘putchar’, possibly from ‘putchar’ (C)
     Objects: ‘Node.o’, ‘Rlob.o’
     Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
     Objects: ‘BirthDeath.o’, ‘ChangeRule.o’, ‘Funs.o’, ‘List.o’,
     ‘Node.o’, ‘Prior.o’, ‘Rlob.o’, ‘Swap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BayesTree/libs/BayesTree.so’:
     Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
     Objects: ‘Lib.o’, ‘List.o’, ‘MuS.o’, ‘Node.o’, ‘mbart.o’
     Found ‘printf’, possibly from ‘printf’ (C)
     Objects: ‘List.o’, ‘Node.o’, ‘Rlob.o’
     Found ‘putchar’, possibly from ‘putchar’ (C)
     Objects: ‘Node.o’, ‘Rlob.o’
     Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
     Objects: ‘BirthDeath.o’, ‘ChangeRule.o’, ‘Funs.o’, ‘Lib.o’,
     ‘List.o’, ‘Node.o’, ‘Prior.o’, ‘Rlob.o’, ‘Swap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File ‘/data/gannet/ripley/R/packages/tests-clang/BayesTree.Rcheck/BayesTree/libs/BayesTree.so’:
     Found ‘_ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
     Objects: ‘Lib.o’, ‘List.o’, ‘MuS.o’, ‘Node.o’, ‘mbart.o’
     Found ‘printf’, possibly from ‘printf’ (C)
     Objects: ‘List.o’, ‘Node.o’, ‘Rlob.o’
     Found ‘putchar’, possibly from ‘putchar’ (C)
     Objects: ‘Node.o’, ‘Rlob.o’
     Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
     Objects: ‘BirthDeath.o’, ‘ChangeRule.o’, ‘Funs.o’, ‘List.o’,
     ‘Node.o’, ‘Prior.o’, ‘Rlob.o’, ‘Swap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File ‘/data/gannet/ripley/R/packages/tests-devel/BayesTree.Rcheck/BayesTree/libs/BayesTree.so’:
     Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
     Objects: ‘Lib.o’, ‘List.o’, ‘MuS.o’, ‘Node.o’, ‘mbart.o’
     Found ‘printf’, possibly from ‘printf’ (C)
     Objects: ‘List.o’, ‘Node.o’, ‘Rlob.o’
     Found ‘putchar’, possibly from ‘putchar’ (C)
     Objects: ‘Node.o’, ‘Rlob.o’
     Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
     Objects: ‘BirthDeath.o’, ‘ChangeRule.o’, ‘Funs.o’, ‘Lib.o’,
     ‘List.o’, ‘Node.o’, ‘Prior.o’, ‘Rlob.o’, ‘Swap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File ‘/Users/ripley/R/packages/tests-devel/BayesTree.Rcheck/BayesTree/libs/BayesTree.so’:
     Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
     Objects: ‘Lib.o’, ‘List.o’, ‘MuS.o’, ‘Node.o’, ‘mbart.o’
     Found ‘_printf’, possibly from ‘printf’ (C)
     Objects: ‘List.o’, ‘Node.o’, ‘Rlob.o’
     Found ‘_putchar’, possibly from ‘putchar’ (C)
     Objects: ‘Node.o’, ‘Rlob.o’
     Found ‘_puts’, possibly from ‘printf’ (C), ‘puts’ (C)
     Objects: ‘BirthDeath.o’, ‘ChangeRule.o’, ‘Funs.o’, ‘List.o’,
     ‘Node.o’, ‘Prior.o’, ‘Rlob.o’, ‘Swap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File ‘/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.2/BayesTree.Rcheck/BayesTree/libs/BayesTree.so’:
     Found ‘__ZSt4cout’, possibly from ‘std::cout’ (C++)
     Objects: ‘Lib.o’, ‘List.o’, ‘MuS.o’, ‘Node.o’, ‘mbart.o’
     Found ‘_printf’, possibly from ‘printf’ (C)
     Objects: ‘List.o’, ‘Node.o’, ‘Rlob.o’
     Found ‘_putchar’, possibly from ‘putchar’ (C)
     Objects: ‘Node.o’, ‘Rlob.o’
     Found ‘_puts’, possibly from ‘printf’ (C), ‘puts’ (C)
     Objects: ‘BirthDeath.o’, ‘ChangeRule.o’, ‘Funs.o’, ‘Lib.o’,
     ‘List.o’, ‘Node.o’, ‘Prior.o’, ‘Rlob.o’, ‘Swap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-gcc

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File 'd:/Rcompile/CRANpkg/lib/3.2/BayesTree/libs/i386/BayesTree.dll':
     Found '_ZSt4cout', possibly from 'std::cout' (C++)
     Objects: 'Lib.o', 'List.o', 'MuS.o', 'Node.o', 'mbart.o'
     Found 'printf', possibly from 'printf' (C)
     Objects: 'List.o', 'Node.o', 'Rlob.o'
     Found 'putchar', possibly from 'putchar' (C)
     Objects: 'Node.o', 'Rlob.o'
     Found 'puts', possibly from 'printf' (C), 'puts' (C)
     Objects: 'BirthDeath.o', 'ChangeRule.o', 'Funs.o', 'Lib.o',
     'List.o', 'Node.o', 'Prior.o', 'Rlob.o', 'Swap.o'
    File 'd:/Rcompile/CRANpkg/lib/3.2/BayesTree/libs/x64/BayesTree.dll':
     Found '_ZSt4cout', possibly from 'std::cout' (C++)
     Objects: 'Lib.o', 'List.o', 'MuS.o', 'Node.o', 'mbart.o'
     Found 'printf', possibly from 'printf' (C)
     Objects: 'List.o', 'Node.o', 'Rlob.o'
     Found 'putchar', possibly from 'putchar' (C)
     Objects: 'Node.o', 'Rlob.o'
     Found 'puts', possibly from 'printf' (C), 'puts' (C)
     Objects: 'BirthDeath.o', 'ChangeRule.o', 'Funs.o', 'Lib.o',
     'List.o', 'Node.o', 'Prior.o', 'Rlob.o', 'Swap.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
    * checking examples ...
Flavor: r-devel-windows-ix86+x86_64

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BayesTree/libs/BayesTree.so’:
     Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
     Objects: ‘Lib.o’, ‘List.o’, ‘MuS.o’, ‘Node.o’, ‘mbart.o’
     Found ‘printf’, possibly from ‘printf’ (C)
     Objects: ‘List.o’, ‘Node.o’, ‘Rlob.o’
     Found ‘putchar’, possibly from ‘putchar’ (C)
     Objects: ‘Node.o’, ‘Rlob.o’
     Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
     Objects: ‘BirthDeath.o’, ‘ChangeRule.o’, ‘Funs.o’, ‘Lib.o’,
     ‘List.o’, ‘Node.o’, ‘Prior.o’, ‘Rlob.o’, ‘Swap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-patched-linux-x86_64

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File ‘/home/ripley/R/Lib32/BayesTree/libs/BayesTree.so’:
     Found ‘__1cDstdEcout_’, possibly from ‘std::cout’ (C++)
     Objects: ‘Lib.o’, ‘List.o’, ‘MuS.o’, ‘Node.o’, ‘mbart.o’
     Found ‘printf’, possibly from ‘printf’ (C)
     Objects: ‘BirthDeath.o’, ‘ChangeRule.o’, ‘Funs.o’, ‘Lib.o’,
     ‘List.o’, ‘Node.o’, ‘Prior.o’, ‘Rlob.o’, ‘Swap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BayesTree/libs/BayesTree.so’:
     Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
     Objects: ‘Lib.o’, ‘List.o’, ‘MuS.o’, ‘Node.o’, ‘mbart.o’
     Found ‘printf’, possibly from ‘printf’ (C)
     Objects: ‘List.o’, ‘Node.o’, ‘Rlob.o’
     Found ‘putchar’, possibly from ‘putchar’ (C)
     Objects: ‘Node.o’, ‘Rlob.o’
     Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
     Objects: ‘BirthDeath.o’, ‘ChangeRule.o’, ‘Funs.o’, ‘Lib.o’,
     ‘List.o’, ‘Node.o’, ‘Prior.o’, ‘Rlob.o’, ‘Swap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File ‘/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/BayesTree.Rcheck/BayesTree/libs/BayesTree.so’:
     Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
     Objects: ‘Lib.o’, ‘List.o’, ‘MuS.o’, ‘Node.o’, ‘mbart.o’
     Found ‘_printf’, possibly from ‘printf’ (C)
     Objects: ‘List.o’, ‘Node.o’, ‘Rlob.o’
     Found ‘_putchar’, possibly from ‘putchar’ (C)
     Objects: ‘Node.o’, ‘Rlob.o’
     Found ‘_puts’, possibly from ‘printf’ (C), ‘puts’ (C)
     Objects: ‘BirthDeath.o’, ‘ChangeRule.o’, ‘Funs.o’, ‘List.o’,
     ‘Node.o’, ‘Prior.o’, ‘Rlob.o’, ‘Swap.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3-1.1
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    6305780/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File 'd:/Rcompile/CRANpkg/lib/3.1/BayesTree/libs/i386/BayesTree.dll':
     Found '_ZSt4cout', possibly from 'std::cout' (C++)
     Objects: 'Lib.o', 'List.o', 'MuS.o', 'Node.o', 'mbart.o'
     Found 'printf', possibly from 'printf' (C)
     Objects: 'List.o', 'Node.o', 'Rlob.o'
     Found 'putchar', possibly from 'putchar' (C)
     Objects: 'Node.o', 'Rlob.o'
     Found 'puts', possibly from 'printf' (C), 'puts' (C)
     Objects: 'BirthDeath.o', 'ChangeRule.o', 'Funs.o', 'Lib.o',
     'List.o', 'Node.o', 'Prior.o', 'Rlob.o', 'Swap.o'
    File 'd:/Rcompile/CRANpkg/lib/3.1/BayesTree/libs/x64/BayesTree.dll':
     Found '_ZSt4cout', possibly from 'std::cout' (C++)
     Objects: 'Lib.o', 'List.o', 'MuS.o', 'Node.o', 'mbart.o'
     Found 'printf', possibly from 'printf' (C)
     Objects: 'List.o', 'Node.o', 'Rlob.o'
     Found 'putchar', possibly from 'putchar' (C)
     Objects: 'Node.o', 'Rlob.o'
     Found 'puts', possibly from 'printf' (C), 'puts' (C)
     Objects: 'BirthDeath.o', 'ChangeRule.o', 'Funs.o', 'Lib.o',
     'List.o', 'Node.o', 'Prior.o', 'Rlob.o', 'Swap.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
    * checking examples ...
Flavor: r-release-windows-ix86+x86_64

Version: 0.3-1.1
Check: compiled code
Result: NOTE
    File 'd:/Rcompile/CRANpkg/lib/3.0/BayesTree/libs/i386/BayesTree.dll':
     Found '_ZSt4cout', possibly from 'std::cout' (C++)
     Objects: 'Lib.o', 'List.o', 'MuS.o', 'Node.o', 'mbart.o'
     Found 'printf', possibly from 'printf' (C)
     Objects: 'List.o', 'Node.o', 'Rlob.o'
     Found 'putchar', possibly from 'putchar' (C)
     Objects: 'Node.o', 'Rlob.o'
     Found 'puts', possibly from 'printf' (C), 'puts' (C)
     Objects: 'BirthDeath.o', 'ChangeRule.o', 'Funs.o', 'Lib.o',
     'List.o', 'Node.o', 'Prior.o', 'Rlob.o', 'Swap.o'
    File 'd:/Rcompile/CRANpkg/lib/3.0/BayesTree/libs/x64/BayesTree.dll':
     Found '_ZSt4cout', possibly from 'std::cout' (C++)
     Objects: 'Lib.o', 'List.o', 'MuS.o', 'Node.o', 'mbart.o'
     Found 'printf', possibly from 'printf' (C)
     Objects: 'List.o', 'Node.o', 'Rlob.o'
     Found 'putchar', possibly from 'putchar' (C)
     Objects: 'Node.o', 'Rlob.o'
     Found 'puts', possibly from 'printf' (C), 'puts' (C)
     Objects: 'BirthDeath.o', 'ChangeRule.o', 'Funs.o', 'Lib.o',
     'List.o', 'Node.o', 'Prior.o', 'Rlob.o', 'Swap.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
    * checking examples ...
Flavor: r-oldrel-windows-ix86+x86_64