CRAN Package Check Results for Package Bayesthresh

Last updated on 2014-10-01 11:47:42.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.1 5.82 54.67 60.49 NOTE
r-devel-linux-x86_64-debian-gcc 2.0.1 6.81 55.06 61.87 NOTE
r-devel-linux-x86_64-fedora-clang 2.0.1 150.45 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0.1 194.05 NOTE
r-devel-osx-x86_64-clang 2.0.1 110.30 NOTE
r-devel-windows-ix86+x86_64 2.0.1 20.00 97.00 117.00 NOTE
r-patched-linux-x86_64 2.0.1 6.10 60.42 66.52 NOTE
r-patched-solaris-sparc 2.0.1 822.70 NOTE
r-patched-solaris-x86 2.0.1 196.60 NOTE
r-release-linux-ix86 2.0.1 7.22 73.50 80.72 NOTE
r-release-linux-x86_64 2.0.1 6.04 60.84 66.88 NOTE
r-release-osx-x86_64-mavericks 2.0.1 NOTE
r-release-osx-x86_64-snowleopard 2.0.1 ERROR
r-release-windows-ix86+x86_64 2.0.1 21.00 115.00 136.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0.1 18.00 106.00 124.00 NOTE

Check Details

Version: 2.0.1
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘lme4’ ‘MASS’ ‘VGAM’ ‘mvtnorm’ ‘matrixcalc’ ‘coda’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 2.0.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘VGAM’ ‘coda’ ‘lme4’ ‘matrixcalc’ ‘mvtnorm’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0.1
Check: R code for possible problems
Result: NOTE
    ACGaussian: no visible global function definition for ‘ginv’
    ACGaussian: no visible global function definition for ‘rmvnorm’
    ACt: no visible global function definition for ‘ginv’
    ACt: no visible global function definition for ‘rmvnorm’
    MCGaussian: no visible global function definition for ‘ginv’
    MCGaussian: no visible global function definition for ‘rmvnorm’
    MCGaussian: no visible global function definition for ‘vec’
    MCt: no visible global function definition for ‘ginv’
    MCt: no visible global function definition for ‘rmvnorm’
    MCt: no visible global function definition for ‘vec’
    NCGaussian: no visible global function definition for ‘ginv’
    NCGaussian: no visible global function definition for ‘rmvnorm’
    NCGaussian: no visible global function definition for ‘rdiric’
    NCt: no visible global function definition for ‘ginv’
    NCt: no visible global function definition for ‘rmvnorm’
    NCt: no visible global function definition for ‘rdiric’
    coef.Bayesthresh: no visible global function definition for ‘mcmc’
    lmerFactorList : <anonymous>: no visible binding for global variable
     ‘rBind’
    lmerFactorList : <anonymous>: no visible global function definition for
     ‘drop0’
    mkZt: no visible binding for global variable ‘rBind’
    predict.Bayesthresh: no visible global function definition for
     ‘rankMatrix’
    random.effects: no visible global function definition for ‘mcmc’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 2.0.1
Check: Rd line widths
Result: NOTE
    Rd file 'Bayesthresh.Rd':
     \examples lines wider than 100 characters:
     ... [TRUNCATED]
    
    Rd file 'MCMCsample.Rd':
     \examples lines wider than 100 characters:
     ... [TRUNCATED]
    
    Rd file 'coef.Bayesthresh.Rd':
     \examples lines wider than 100 characters:
     ... [TRUNCATED]
     ... [TRUNCATED]
    
    Rd file 'compVar.Rd':
     \examples lines wider than 100 characters:
     ... [TRUNCATED]
    
    Rd file 'plot.random.effects.Rd':
     \usage lines wider than 90 characters:
     xlim = NULL, ylim = NULL, pch=19, col.points='red', col.seg=gray(0.5), ...)
     \examples lines wider than 100 characters:
     ... [TRUNCATED]
    
    Rd file 'predict.Bayesthresh.Rd':
     \examples lines wider than 100 characters:
     ... [TRUNCATED]
    
    Rd file 'random.effects.Rd':
     \examples lines wider than 100 characters:
     ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0.1
Check: R code for possible problems
Result: NOTE
    Error: package ‘lattice’ could not be loaded
    Call sequence:
    5: stop(gettextf("package %s could not be loaded", sQuote(pkg)),
     call. = FALSE, domain = NA)
    4: .getRequiredPackages2(pkgInfo, quietly = quietly)
    3: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc)
    2: .getRequiredPackages2(pkgInfo, quietly = quietly)
    1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard

Version: 2.0.1
Check: for missing documentation entries
Result: ERROR
    Error: package ‘lattice’ could not be loaded
    Call sequence:
    5: stop(gettextf("package %s could not be loaded", sQuote(pkg)),
     call. = FALSE, domain = NA)
    4: .getRequiredPackages2(pkgInfo, quietly = quietly)
    3: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc)
    2: .getRequiredPackages2(pkgInfo, quietly = quietly)
    1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard