CRAN Package Check Results for Package Bclim

Last updated on 2014-04-16 11:47:15.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2 1.73 16.77 18.50 NOTE
r-devel-linux-x86_64-debian-gcc 2.2 2.34 17.23 19.57 NOTE
r-devel-linux-x86_64-fedora-clang 2.2 34.89 NOTE
r-devel-linux-x86_64-fedora-gcc 2.2 32.97 NOTE
r-devel-macosx-x86_64-clang 2.2 37.89 NOTE
r-devel-macosx-x86_64-gcc 2.2 NOTE
r-devel-windows-ix86+x86_64 2.2 9.00 33.00 42.00 NOTE
r-patched-linux-x86_64 2.2 2.01 16.72 18.73 NOTE
r-patched-solaris-sparc 2.2 194.60 NOTE
r-patched-solaris-x86 2.2 47.20 NOTE
r-release-linux-ix86 2.2 4.00 45.00 49.00 NOTE
r-release-linux-x86_64 2.2 2.03 16.70 18.73 NOTE
r-release-macosx-x86_64 2.2 ERROR
r-release-windows-ix86+x86_64 2.2 9.00 34.00 43.00 NOTE
r-oldrel-windows-ix86+x86_64 2.2 9.00 34.00 43.00 NOTE

Check Details

Version: 2.2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘hdrcde’ ‘mclust’ ‘statmod’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2
Check: Rd line widths
Result: NOTE
    Rd file 'BclimCompile.Rd':
     \examples lines wider than 100 characters:
     step2 <- BclimMixSer(step1) # See also the parallelised version BclimMixPar if you have doMC and foreach installed
     step3 <- BclimMCMC(step2,chron.loc) # You should probably do some convergence checking after this step
    
    Rd file 'BclimLayer.Rd':
     \examples lines wider than 100 characters:
     step2 <- BclimMixSer(step1) # See also the parallelised version BclimMixPar if you have doMC and foreach installed
     step3 <- BclimMCMC(step2,chron.loc) # You should probably do some convergence checking after this step
    
    Rd file 'BclimMCMC.Rd':
     \usage lines wider than 90 characters:
     BclimMCMC(Bclimdata, chron.loc, nchron = 10000, control.mcmc = list(iterations = 1e+05, burnin = 20000, thinby = 40, report = 100), con ... [TRUNCATED]
     \examples lines wider than 100 characters:
     step2 <- BclimMixSer(step1) # See also the parallelised version BclimMixPar if you have doMC and foreach installed
     step3 <- BclimMCMC(step2,chron.loc) # You should probably do some convergence checking after this step
    
    Rd file 'BclimMixPar.Rd':
     \examples lines wider than 100 characters:
     step2 <- BclimMixPar(step1) # See also the serial version BclimMixSer if you cannot install doMC and foreach
     step3 <- BclimMCMC(step2,chron.loc) # You should probably do some convergence checking after this step
    
    Rd file 'BclimMixSer.Rd':
     \examples lines wider than 100 characters:
     step2 <- BclimMixSer(step1) # See also the parallelised version BclimMixPar if you have doMC and foreach installed
     step3 <- BclimMCMC(step2,chron.loc) # You should probably do some convergence checking after this step
    
    Rd file 'BclimRun.Rd':
     \usage lines wider than 90 characters:
     BclimRun(pollen.loc, chron.loc, core.name = "Core", time.grid = seq(0, 14, length = 100), required.data3D = NULL, nchrons = 10000, para ... [TRUNCATED]
     \examples lines wider than 100 characters:
     RunSluggan <- BclimRun(pollen.loc,chron.loc,core.name="Sluggan Moss",time.grid=seq(0,14,length=100),nchrons=10000,required.data3D=requi ... [TRUNCATED]
    
    Rd file 'plotBclim.Rd':
     \usage lines wider than 90 characters:
     plotBclim(x, dim = 1, title = NULL, presentleft = TRUE, blob = TRUE, MDPcol = "blue", denscol = "red", MDPtransp = 0.1, denstransp = 0. ... [TRUNCATED]
    
    Rd file 'plotBclimVol.Rd':
     \usage lines wider than 90 characters:
     plotBclimVol(x, dim = 1, title = NULL, presentleft = TRUE, denscol = "red", denstransp = 0.5, leg = TRUE, dolog10 = FALSE, med = FALSE, ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘doMC’ ‘foreach’
Flavor: r-devel-macosx-x86_64-gcc

Version: 2.2
Check: R code for possible problems
Result: NOTE
    BclimMixPar: no visible global function definition for ‘registerDoMC’
    BclimMixPar: no visible global function definition for ‘%dopar%’
    BclimMixPar: no visible global function definition for ‘foreach’
    BclimMixPar: no visible global function definition for ‘icount’
Flavor: r-devel-macosx-x86_64-gcc

Version: 2.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'doMC'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2
Check: R code for possible problems
Result: NOTE
    BclimMixPar: no visible global function definition for 'registerDoMC'
    BclimMixPar: no visible global function definition for 'icount'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2
Check: examples
Result: ERROR
    Running examples in ‘Bclim-Ex.R’ failed
    The error occurred in:
    
    
    R Under development (unstable) (2014-01-09 r64712) -- "Unsuffered Consequences"
    Copyright (C) 2014 The R Foundation for Statistical Computing
    Platform: x86_64-apple-darwin10.8.0 (64-bit)
    
    R is free software and comes with ABSOLUTELY NO WARRANTY.
    You are welcome to redistribute it under certain conditions.
    Type 'license()' or 'licence()' for distribution details.
    
     Natural language support but running in an English locale
    
    R is a collaborative project with many contributors.
    Type 'contributors()' for more information and
    'citation()' on how to cite R or R packages in publications.
    
    Type 'demo()' for some demos, 'help()' for on-line help, or
    'help.start()' for an HTML browser interface to help.
    Type 'q()' to quit R.
    
    > pkgname <- "Bclim"
    > source(file.path(R.home("share"), "R", "examples-header.R"))
    > options(warn = 1)
    > library('Bclim')
    Loading required package: mclust
    Package 'mclust' version 4.2
    Loading required package: hdrcde
    Loading required package: mvtnorm
    hdrcde 3.1 loaded
    
    Loading required package: statmod
    Loading required package: MASS
    Error in FUN("npk"[[1L]], ...) :
     cannot open file '/Library/Frameworks/R.framework/Resources/library/datasets/data/Rdata.rdb': No such file or directory
    Calls: library ... library -> checkConflicts -> same.isFn -> vapply -> FUN
    Execution halted
    Error: failed to load sRGB colorspace file
    Execution halted
Flavor: r-release-macosx-x86_64