CRAN Package Check Results for Package BioMark

Last updated on 2015-07-05 03:47:17.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.2 3.15 41.02 44.17 NOTE
r-devel-linux-x86_64-debian-gcc 0.4.2 2.86 41.95 44.80 NOTE
r-devel-linux-x86_64-fedora-clang 0.4.2 88.16 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4.2 83.92 NOTE
r-devel-osx-x86_64-clang 0.4.2 69.82 NOTE
r-devel-windows-ix86+x86_64 0.4.2 9.00 59.00 68.00 NOTE
r-patched-linux-x86_64 0.4.2 2.83 40.21 43.04 NOTE
r-patched-solaris-sparc 0.4.2 541.20 NOTE
r-patched-solaris-x86 0.4.2 119.10 NOTE
r-release-linux-x86_64 0.4.2 3.08 39.89 42.96 NOTE
r-release-osx-x86_64-mavericks 0.4.2 OK
r-release-windows-ix86+x86_64 0.4.2 11.00 62.00 73.00 OK
r-oldrel-windows-ix86+x86_64 0.4.2 13.00 82.00 95.00 OK

Check Details

Version: 0.4.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     ROC.default
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.4.2
Check: R code for possible problems
Result: NOTE
    AUC: no visible global function definition for ‘aggregate’
    HCthresh: no visible global function definition for ‘plot’
    HCthresh: no visible global function definition for ‘abline’
    gen.data2: no visible global function definition for ‘rnorm’
    get.biom : <anonymous>: no visible global function definition for ‘pt’
    identify.ROC: no visible global function definition for ‘identify’
    lines.ROC: no visible global function definition for ‘lines’
    plot.ROC: no visible global function definition for ‘plot’
    plot.ROC: no visible global function definition for ‘abline’
    points.ROC: no visible global function definition for ‘points’
    scalefun : <anonymous>: no visible binding for global variable ‘sd’
    traceplot: no visible global function definition for ‘coef’
    traceplot: no visible global function definition for ‘matplot’
    traceplot: no visible global function definition for ‘mtext’
    traceplot: no visible global function definition for ‘abline’
    Undefined global functions or variables:
     abline aggregate coef identify lines matplot mtext plot points pt
     rnorm sd
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64