CRAN Package Check Results for Package Biograph

Last updated on 2015-07-06 06:46:33.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.4 4.13 66.41 70.54 ERROR
r-devel-linux-x86_64-debian-gcc 2.0.4 4.16 66.36 70.53 ERROR
r-devel-linux-x86_64-fedora-clang 2.0.4 146.90 ERROR
r-devel-linux-x86_64-fedora-gcc 2.0.4 137.47 ERROR
r-devel-osx-x86_64-clang 2.0.4 120.91 ERROR
r-devel-windows-ix86+x86_64 2.0.4 15.00 106.00 121.00 ERROR
r-patched-linux-x86_64 2.0.4 3.96 70.66 74.63 OK
r-patched-solaris-sparc 2.0.4 1011.30 OK
r-patched-solaris-x86 2.0.4 211.70 OK
r-release-linux-x86_64 2.0.4 4.23 70.91 75.14 OK
r-release-osx-x86_64-mavericks 2.0.4 OK
r-release-windows-ix86+x86_64 2.0.4 19.00 115.00 134.00 OK
r-oldrel-windows-ix86+x86_64 2.0.4 32.00 165.00 197.00 OK

Check Details

Version: 2.0.4
Check: R code for possible problems
Result: NOTE
    Biograph.long: no visible global function definition for ‘reshape’
    Biograph.msm: no visible global function definition for ‘reshape’
    Biograph.mstate : <anonymous>: no visible global function definition
     for ‘na.omit’
    Biograph.mstate: no visible global function definition for ‘na.omit’
    ChangeObservationWindow.t: no visible global function definition for
     ‘na.omit’
    Cumrates: no visible global function definition for ‘predict’
    Date_as_year: no visible global function definition for ‘na.omit’
    Lexis.lines: no visible global function definition for ‘na.omit’
    Lexis.points: no visible global function definition for ‘dev.off’
    LexisOccExp: no visible global function definition for ‘na.omit’
    LexisOccExp: no visible global function definition for ‘text’
    LexisOccExp: no visible global function definition for ‘par’
    Lexislines.episodes: no visible global function definition for
     ‘na.omit’
    Lexislines.episodes: no visible global function definition for
     ‘rainbow’
    Lexislines.episodes: no visible global function definition for ‘points’
    Lexislines.episodes: no visible global function definition for ‘text’
    Lexislines.episodes: no visible global function definition for ‘legend’
    Lexispoints: no visible global function definition for ‘na.omit’
    Lexispoints: no visible global function definition for ‘palette’
    Lexispoints: no visible global function definition for ‘rainbow’
    Lexispoints: no visible global function definition for ‘points’
    Sequences: no visible global function definition for ‘aggregate’
    TransitionAB: no visible global function definition for ‘na.omit’
    date_convert: no visible global function definition for ‘na.omit’
    plot.MSLT.S: no visible global function definition for ‘rainbow’
    plot.cumrates: no visible global function definition for ‘plot’
    plot.cumrates: no visible global function definition for ‘lines’
    plot.cumrates: no visible global function definition for ‘axis’
    plot.cumrates: no visible global function definition for ‘box’
    plot.cumrates: no visible global function definition for ‘abline’
    plot.cumrates: no visible global function definition for ‘legend’
    plot.occup.S: no visible global function definition for ‘rainbow’
    state_age: no visible global function definition for ‘na.omit’
    Undefined global functions or variables:
     abline aggregate axis box dev.off legend lines na.omit palette par
     plot points predict rainbow reshape text
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.0.4
Check: examples
Result: ERROR
    Running examples in ‘Biograph-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Sequences
    > ### Title: Lists state sequences in the data
    > ### Aliases: Sequences
    >
    > ### ** Examples
    >
    > # Example 1: Sequences in GLHS
    > data(GLHS)
    > z <- Parameters (GLHS)
    [1] ". . . . Running function Parameters . . . . "
    [1] "Exploring types of transitions"
    > seq <- Sequences (Bdata=GLHS,mean_median="median")
    Warning in Ops.factor(100, sequences2$ncase) :
     ‘*’ not meaningful for factors
    Error in Summary.factor(c(48L, 47L, 46L, 45L, 44L, 43L, 42L, 41L, 40L, :
     ‘sum’ not meaningful for factors
    Calls: Sequences -> Summary.factor
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64