CRAN Package Check Results for Package Biograph

Last updated on 2015-07-29 17:47:51.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.4 4.30 68.25 72.55 ERROR
r-devel-linux-x86_64-debian-gcc 2.0.4 4.17 65.99 70.16 ERROR
r-devel-linux-x86_64-fedora-clang 2.0.4 148.42 ERROR
r-devel-linux-x86_64-fedora-gcc 2.0.4 141.48 ERROR
r-devel-osx-x86_64-clang 2.0.4 132.36 ERROR
r-devel-windows-ix86+x86_64 2.0.4 13.00 106.00 119.00 ERROR
r-patched-linux-x86_64 2.0.4 4.06 73.07 77.12 OK
r-patched-solaris-sparc 2.0.4 1051.10 OK
r-patched-solaris-x86 2.0.4 212.30 OK
r-release-linux-x86_64 2.0.4 4.01 70.60 74.60 OK
r-release-osx-x86_64-mavericks 2.0.4 OK
r-release-windows-ix86+x86_64 2.0.4 19.00 114.00 133.00 OK
r-oldrel-windows-ix86+x86_64 2.0.4 23.00 162.00 185.00 OK

Check Details

Version: 2.0.4
Check: R code for possible problems
Result: NOTE
    Biograph.long: no visible global function definition for ‘reshape’
    Biograph.msm: no visible global function definition for ‘reshape’
    Biograph.mstate : <anonymous>: no visible global function definition
     for ‘na.omit’
    Biograph.mstate: no visible global function definition for ‘na.omit’
    ChangeObservationWindow.t: no visible global function definition for
     ‘na.omit’
    Cumrates: no visible global function definition for ‘predict’
    Date_as_year: no visible global function definition for ‘na.omit’
    Lexis.lines: no visible global function definition for ‘na.omit’
    Lexis.points: no visible global function definition for ‘dev.off’
    LexisOccExp: no visible global function definition for ‘na.omit’
    LexisOccExp: no visible global function definition for ‘text’
    LexisOccExp: no visible global function definition for ‘par’
    Lexislines.episodes: no visible global function definition for
     ‘na.omit’
    Lexislines.episodes: no visible global function definition for
     ‘rainbow’
    Lexislines.episodes: no visible global function definition for ‘points’
    Lexislines.episodes: no visible global function definition for ‘text’
    Lexislines.episodes: no visible global function definition for ‘legend’
    Lexispoints: no visible global function definition for ‘na.omit’
    Lexispoints: no visible global function definition for ‘palette’
    Lexispoints: no visible global function definition for ‘rainbow’
    Lexispoints: no visible global function definition for ‘points’
    Sequences: no visible global function definition for ‘aggregate’
    TransitionAB: no visible global function definition for ‘na.omit’
    date_convert: no visible global function definition for ‘na.omit’
    plot.MSLT.S: no visible global function definition for ‘rainbow’
    plot.cumrates: no visible global function definition for ‘plot’
    plot.cumrates: no visible global function definition for ‘lines’
    plot.cumrates: no visible global function definition for ‘axis’
    plot.cumrates: no visible global function definition for ‘box’
    plot.cumrates: no visible global function definition for ‘abline’
    plot.cumrates: no visible global function definition for ‘legend’
    plot.occup.S: no visible global function definition for ‘rainbow’
    state_age: no visible global function definition for ‘na.omit’
    Undefined global functions or variables:
     abline aggregate axis box dev.off legend lines na.omit palette par
     plot points predict rainbow reshape text
    Consider adding
     importFrom("grDevices", "dev.off", "palette", "rainbow")
     importFrom("graphics", "abline", "axis", "box", "legend", "lines",
     "par", "plot", "points", "text")
     importFrom("stats", "aggregate", "na.omit", "predict", "reshape")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.0.4
Check: examples
Result: ERROR
    Running examples in ‘Biograph-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Sequences
    > ### Title: Lists state sequences in the data
    > ### Aliases: Sequences
    >
    > ### ** Examples
    >
    > # Example 1: Sequences in GLHS
    > data(GLHS)
    > z <- Parameters (GLHS)
    [1] ". . . . Running function Parameters . . . . "
    [1] "Exploring types of transitions"
    > seq <- Sequences (Bdata=GLHS,mean_median="median")
    Warning in Ops.factor(100, sequences2$ncase) :
     ‘*’ not meaningful for factors
    Error in Summary.factor(c(48L, 47L, 46L, 45L, 44L, 43L, 42L, 41L, 40L, :
     ‘sum’ not meaningful for factors
    Calls: Sequences -> Summary.factor
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64