CRAN Package Check Results for Package BoolNet

Last updated on 2014-08-28 14:47:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.1 3.52 151.02 154.54 OK
r-devel-linux-x86_64-debian-gcc 2.0.1 9.34 149.26 158.60 OK
r-devel-linux-x86_64-fedora-clang 2.0.1 327.03 OK
r-devel-linux-x86_64-fedora-gcc 2.0.1 324.29 OK
r-devel-osx-x86_64-clang 2.0.1 247.41 OK
r-devel-windows-ix86+x86_64 2.0 23.00 234.00 257.00 NOTE
r-patched-linux-x86_64 2.0.1 10.19 159.69 169.88 OK
r-patched-solaris-sparc 2.0.1 1946.50 OK
r-patched-solaris-x86 2.0.1 340.50 OK
r-release-linux-ix86 2.0 10.87 206.96 217.83 OK
r-release-linux-x86_64 2.0.1 9.89 160.39 170.28 OK
r-release-osx-x86_64-mavericks 2.0.1 NOTE
r-release-osx-x86_64-snowleopard 2.0 OK
r-release-windows-ix86+x86_64 2.0.1 23.00 253.00 276.00 OK
r-oldrel-windows-ix86+x86_64 2.0.1 26.00 259.00 285.00 OK

Check Details

Version: 2.0
Check: R code for possible problems
Result: NOTE
    loadBioTapestry: no visible global function definition for 'xmlRoot'
    loadBioTapestry: no visible global function definition for
     'xmlTreeParse'
    loadSBML: no visible global function definition for 'xmlRoot'
    loadSBML: no visible global function definition for 'xmlParse'
    loadSBML: no visible global function definition for 'getNodeSet'
    loadSBML: no visible global function definition for 'removeNodes'
    loadSBML: no visible global function definition for 'xmlName'
    loadSBML: no visible global function definition for 'xmlAttrs'
    loadSBML: no visible global function definition for 'xmlNamespaces'
    parseAllGenes: no visible global function definition for 'xmlApply'
    parseAllLinks: no visible global function definition for 'xmlChildren'
    parseAllLinks: no visible global function definition for 'xmlAttrs'
    parseGeneAttrs: no visible global function definition for 'xmlApply'
    parseGeneAttrs : <anonymous>: no visible global function definition for
     'xmlAttrs'
    parseGeneAttrs : <anonymous>: no visible global function definition for
     'xmlName'
    parseGeneAttrs : <anonymous>: no visible global function definition for
     'xmlChildren'
    parseMathML: no visible global function definition for 'xmlName'
    parseMathML: no visible global function definition for 'xmlChildren'
    parseMathML: no visible global function definition for 'xmlValue'
    parseMathML: no visible global function definition for 'xmlAttrs'
    parseSBMLFunctionTerms: no visible global function definition for
     'xmlApply'
    parseSBMLFunctionTerms : <anonymous>: no visible global function
     definition for 'xmlAttrs'
    parseSBMLFunctionTerms : <anonymous>: no visible global function
     definition for 'xmlName'
    parseSBMLSpecies: no visible global function definition for
     'xmlChildren'
    parseSBMLSpecies: no visible global function definition for 'xmlAttrs'
    parseSBMLTransitions: no visible global function definition for
     'xmlApply'
    parseSBMLTransitions : <anonymous>: no visible global function
     definition for 'xmlChildren'
    parseSBMLTransitions : <anonymous>: no visible global function
     definition for 'xmlAttrs'
    plotAttractors: no visible binding for global variable 'layout.circle'
    plotAttractors : <anonymous>: no visible global function definition for
     'graph.data.frame'
    plotNetworkWiring: no visible binding for global variable
     'layout.fruchterman.reingold'
    plotNetworkWiring: no visible global function definition for
     'graph.data.frame'
    plotNetworkWiring: no visible global function definition for
     'set.vertex.attribute'
    plotPBNTransitions: no visible binding for global variable
     'layout.fruchterman.reingold'
    plotPBNTransitions: no visible global function definition for
     'graph.data.frame'
    plotPBNTransitions: no visible global function definition for
     'set.edge.attribute'
    plotSequence: no visible global function definition for
     'graph.data.frame'
    plotSequence: no visible global function definition for
     'set.edge.attribute'
    plotStateGraph: no visible binding for global variable
     'layout.fruchterman.reingold'
    plotStateGraph: no visible global function definition for
     'graph.data.frame'
    plotStateGraph: no visible global function definition for
     'set.vertex.attribute'
    plotStateGraph: no visible global function definition for
     'set.edge.attribute'
    plotStateGraph: no visible global function definition for
     'piecewise.layout'
    plotStateGraph: no visible global function definition for
     'autocurve.edges'
    testIndegree: no visible global function definition for 'degree'
    xmlFindNode: no visible global function definition for 'xmlSApply'
    xmlFindNode: no visible binding for global variable 'xmlName'
    xmlFindNode: no visible global function definition for 'xmlChildren'
Flavor: r-devel-windows-ix86+x86_64

Version: 2.0.1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in res[ord[idx]] <- r :
     number of items to replace is not a multiple of replacement length
    Warning in res[ord[idx]] <- r :
     number of items to replace is not a multiple of replacement length
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'BoolNet_package_vignette.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `a4wide.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    _test/BoolNet/vignettes/BoolNet_package_vignette.tex:7: ==> Fatal error occurr
    ed, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks