CRAN Package Check Results for Package BoolNet

Last updated on 2017-05-30 02:46:27.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.3 12.79 120.65 133.44 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.3 17.65 114.30 131.95 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.3 241.05 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.3 240.13 NOTE
r-devel-windows-ix86+x86_64 2.1.3 54.00 236.00 290.00 OK
r-patched-linux-x86_64 2.1.3 16.52 120.58 137.10 NOTE
r-patched-solaris-sparc 2.1.3 1744.30 OK
r-patched-solaris-x86 2.1.3 124.10 WARN
r-release-linux-x86_64 2.1.3 16.94 121.89 138.83 NOTE
r-release-windows-ix86+x86_64 2.1.3 71.00 222.00 293.00 WARN
r-release-osx-x86_64 2.1.3 NOTE
r-oldrel-windows-ix86+x86_64 2.1.3 53.00 206.00 259.00 OK
r-oldrel-osx-x86_64 2.1.3 OK

Additional issues

rchk

Check Details

Version: 2.1.3
Check: compiled code
Result: NOTE
    File ‘BoolNet/libs/BoolNet.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.1.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    
    Error: processing vignette 'BoolNet_package_vignette.Snw' failed with diagnostics:
     chunk 13
    Error in (function (interaction, index, gene) :
     No values for the "don't care" entries were specified for gene "Fkh2"!
    Execution halted
Flavor: r-patched-solaris-x86

Version: 2.1.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in res[ord[idx]] <- r :
     number of items to replace is not a multiple of replacement length
    Warning in res[ord[idx]] <- r :
     number of items to replace is not a multiple of replacement length
    Warning in plotStateGraph(sim) :
     The parameter "highlightAttractors" is set to true although not enough information is available in stateGraph. Highlightning of attractors will be set to FALSE.
    
    Error: processing vignette 'BoolNet_package_vignette.Snw' failed with diagnostics:
     chunk 112
    Error in if (file.exists(dest) && file.mtime(dest) > file.mtime(lib) && :
     missing value where TRUE/FALSE needed
    Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 2.1.3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in structure(x$children, class = "XMLNodeList") :
     Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
     Consider 'structure(list(), *)' instead.
    Warning in structure(x$children, class = "XMLNodeList") :
     Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
     Consider 'structure(list(), *)' instead.
    Warning in structure(x$children, class = "XMLNodeList") :
     Calling 'structure(NULL, *)' is deprecated, as NULL cannot have attributes.
     Consider 'structure(list(), *)' instead.
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'BoolNet_package_vignette.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `a4wide.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.7 ^^M
    
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64