CRAN Package Check Results for Package CCTpack

Last updated on 2016-05-28 05:47:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 1.4 1.47 36.37 37.84 NOTE
r-devel-linux-x86_64-fedora-clang 1.4 57.27 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4 59.78 NOTE
r-devel-osx-x86_64-clang 1.4 65.56 NOTE
r-devel-windows-ix86+x86_64 1.4 4.00 54.00 58.00 NOTE
r-patched-linux-x86_64 1.4 1.31 34.37 35.68 NOTE
r-patched-solaris-sparc 1.4 367.70 NOTE
r-patched-solaris-x86 1.4 81.50 NOTE
r-release-linux-x86_64 1.4 1.34 34.27 35.61 NOTE
r-release-osx-x86_64-mavericks 1.4 ERROR
r-release-windows-ix86+x86_64 1.4 7.00 73.00 80.00 NOTE

Check Details

Version: 1.4
Check: R code for possible problems
Result: NOTE
    applymodelfunc : jags.inits: no visible global function definition for
     ‘rbinom’
    applymodelfunc : jags.inits: no visible global function definition for
     ‘runif’
    applymodelfunc : jags.inits: no visible global function definition for
     ‘rnorm’
    applymodelfunc : Rhat1: no visible binding for global variable ‘var’
    applymodelfunc : Rhat1: no visible global function definition for ‘cov’
    applymodelfunc : Rhat1: no visible global function definition for ‘var’
    applymodelfunc : labelswitchalggcm: no visible global function
     definition for ‘cor’
    applymodelfunc : labelswitchalggcm: no visible binding for global
     variable ‘sd’
    applymodelfunc : labelswitchalggcm : <anonymous>: no visible global
     function definition for ‘quantile’
    applymodelfunc : labelswitchalgltrm: no visible global function
     definition for ‘cor’
    applymodelfunc : labelswitchalgltrm: no visible binding for global
     variable ‘sd’
    applymodelfunc : labelswitchalgltrm : <anonymous>: no visible global
     function definition for ‘quantile’
    applymodelfunc : labelswitchalgcrm: no visible global function
     definition for ‘cor’
    applymodelfunc : labelswitchalgcrm: no visible binding for global
     variable ‘sd’
    applymodelfunc : labelswitchalgcrm : <anonymous>: no visible global
     function definition for ‘quantile’
    applymodelfunc: no visible binding for global variable ‘sd’
    applymodelfunc: no visible global function definition for ‘var’
    applymodelfunc: no visible global function definition for ‘pnorm’
    applymodelfunc: no visible global function definition for ‘dnorm’
    exportfunc: no visible global function definition for ‘write.csv’
    invprobit: no visible global function definition for ‘pnorm’
    loadfilefunc: no visible global function definition for ‘read.csv’
    plotresultsfunc: no visible global function definition for ‘jpeg’
    plotresultsfunc: no visible global function definition for ‘postscript’
    plotresultsfunc: no visible global function definition for ‘par’
    plotresultsfunc: no visible global function definition for ‘points’
    plotresultsfunc: no visible global function definition for ‘segments’
    plotresultsfunc: no visible global function definition for ‘arrows’
    plotresultsfunc: no visible global function definition for ‘text’
    plotresultsfunc: no visible global function definition for ‘box’
    plotresultsfunc: no visible global function definition for ‘axis’
    plotresultsfunc: no visible global function definition for ‘axTicks’
    plotresultsfunc: no visible global function definition for ‘dev.off’
    ppcfunc: no visible global function definition for ‘rbinom’
    ppcfunc : <anonymous>: no visible global function definition for ‘cor’
    ppcfunc : <anonymous>: no visible global function definition for ‘sd’
    ppcfunc: no visible global function definition for ‘cor’
    ppcfunc: no visible binding for global variable ‘var’
    ppcfunc: no visible global function definition for ‘var’
    ppcfunc: no visible global function definition for ‘rnorm’
    ppcfunc : <anonymous>: no visible global function definition for ‘var’
    ppcfunc: no visible global function definition for ‘jpeg’
    ppcfunc: no visible global function definition for ‘postscript’
    ppcfunc: no visible global function definition for ‘par’
    ppcfunc: no visible global function definition for ‘points’
    ppcfunc: no visible global function definition for ‘rainbow’
    ppcfunc: no visible global function definition for ‘ecdf’
    ppcfunc: no visible global function definition for ‘quantile’
    ppcfunc: no visible global function definition for ‘density’
    ppcfunc: no visible global function definition for ‘segments’
    ppcfunc: no visible global function definition for ‘text’
    ppcfunc: no visible global function definition for ‘dev.off’
    probit: no visible global function definition for ‘qnorm’
    screeplotfunc: no visible global function definition for ‘jpeg’
    screeplotfunc: no visible global function definition for ‘postscript’
    screeplotfunc : <anonymous>: no visible global function definition for
     ‘sd’
    screeplotfunc: no visible global function definition for ‘par’
    screeplotfunc: no visible global function definition for ‘cor’
    screeplotfunc: no visible global function definition for ‘dev.off’
    Undefined global functions or variables:
     arrows axTicks axis box cor cov density dev.off dnorm ecdf jpeg par
     pnorm points postscript qnorm quantile rainbow rbinom read.csv rnorm
     runif sd segments text var write.csv
    Consider adding
     importFrom("grDevices", "dev.off", "jpeg", "postscript", "rainbow")
     importFrom("graphics", "arrows", "axTicks", "axis", "box", "par",
     "points", "segments", "text")
     importFrom("stats", "cor", "cov", "density", "dnorm", "ecdf", "pnorm",
     "qnorm", "quantile", "rbinom", "rnorm", "runif", "sd",
     "var")
     importFrom("utils", "read.csv", "write.csv")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.4
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4
Check: R code for possible problems
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyapplymodelfunc : jags.inits: no visible global function definition for
     ‘rbinom’
    applymodelfunc : jags.inits: no visible global function definition for
     ‘runif’
    applymodelfunc : jags.inits: no visible global function definition for
     ‘rnorm’
    applymodelfunc : Rhat1: no visible binding for global variable ‘var’
    applymodelfunc : Rhat1: no visible global function definition for ‘cov’
    applymodelfunc : Rhat1: no visible global function definition for ‘var’
    applymodelfunc : labelswitchalggcm: no visible global function
     definition for ‘cor’
    applymodelfunc : labelswitchalggcm: no visible binding for global
     variable ‘sd’
    applymodelfunc : labelswitchalggcm : <anonymous>: no visible global
     function definition for ‘quantile’
    applymodelfunc : labelswitchalgltrm: no visible global function
     definition for ‘cor’
    applymodelfunc : labelswitchalgltrm: no visible binding for global
     variable ‘sd’
    applymodelfunc : labelswitchalgltrm : <anonymous>: no visible global
     function definition for ‘quantile’
    applymodelfunc : labelswitchalgcrm: no visible global function
     definition for ‘cor’
    applymodelfunc : labelswitchalgcrm: no visible binding for global
     variable ‘sd’
    applymodelfunc : labelswitchalgcrm : <anonymous>: no visible global
     function definition for ‘quantile’
    applymodelfunc: no visible binding for global variable ‘sd’
    applymodelfunc: no visible global function definition for ‘var’
    applymodelfunc: no visible global function definition for ‘pnorm’
    applymodelfunc: no visible global function definition for ‘dnorm’
    exportfunc: no visible global function definition for ‘write.csv’
    invprobit: no visible global function definition for ‘pnorm’
    loadfilefunc: no visible global function definition for ‘read.csv’
    plotresultsfunc: no visible global function definition for ‘jpeg’
    plotresultsfunc: no visible global function definition for ‘postscript’
    plotresultsfunc: no visible global function definition for ‘par’
    plotresultsfunc: no visible global function definition for ‘points’
    plotresultsfunc: no visible global function definition for ‘segments’
    plotresultsfunc: no visible global function definition for ‘arrows’
    plotresultsfunc: no visible global function definition for ‘text’
    plotresultsfunc: no visible global function definition for ‘box’
    plotresultsfunc: no visible global function definition for ‘axis’
    plotresultsfunc: no visible global function definition for ‘axTicks’
    plotresultsfunc: no visible global function definition for ‘dev.off’
    ppcfunc: no visible global function definition for ‘rbinom’
    ppcfunc : <anonymous>: no visible global function definition for ‘cor’
    ppcfunc : <anonymous>: no visible global function definition for ‘sd’
    ppcfunc: no visible global function definition for ‘cor’
    ppcfunc: no visible binding for global variable ‘var’
    ppcfunc: no visible global function definition for ‘var’
    ppcfunc: no visible global function definition for ‘rnorm’
    ppcfunc : <anonymous>: no visible global function definition for ‘var’
    ppcfunc: no visible global function definition for ‘jpeg’
    ppcfunc: no visible global function definition for ‘postscript’
    ppcfunc: no visible global function definition for ‘par’
    ppcfunc: no visible global function definition for ‘points’
    ppcfunc: no visible global function definition for ‘rainbow’
    ppcfunc: no visible global function definition for ‘ecdf’
    ppcfunc: no visible global function definition for ‘quantile’
    ppcfunc: no visible global function definition for ‘density’
    ppcfunc: no visible global function definition for ‘segments’
    ppcfunc: no visible global function definition for ‘text’
    ppcfunc: no visible global function definition for ‘dev.off’
    probit: no visible global function definition for ‘qnorm’
    screeplotfunc: no visible global function definition for ‘jpeg’
    screeplotfunc: no visible global function definition for ‘postscript’
    screeplotfunc : <anonymous>: no visible global function definition for
     ‘sd’
    screeplotfunc: no visible global function definition for ‘par’
    screeplotfunc: no visible global function definition for ‘cor’
    screeplotfunc: no visible global function definition for ‘dev.off’
    Undefined global functions or variables:
     arrows axTicks axis box cor cov density dev.off dnorm ecdf jpeg par
     pnorm points postscript qnorm quantile rainbow rbinom read.csv rnorm
     runif sd segments text var write.csv
    Consider adding
     importFrom("grDevices", "dev.off", "jpeg", "postscript", "rainbow")
     importFrom("graphics", "arrows", "axTicks", "axis", "box", "par",
     "points", "segments", "text")
     importFrom("stats", "cor", "cov", "density", "dnorm", "ecdf", "pnorm",
     "qnorm", "quantile", "rbinom", "rnorm", "runif", "sd",
     "var")
     importFrom("utils", "read.csv", "write.csv")
    to your NAMESPACE file.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4
Check: examples
Result: ERROR
    Running examples in ‘CCTpack-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cctgui
    > ### Title: The CCT GUI
    > ### Aliases: cctgui
    >
    > ### ** Examples
    >
    > #First visit 'mcmc-jags.sourceforge.net/' to install JAGS (Plummer, 2003) if it's not installed
    >
    > ####################
    > #Instructions for Using the GUI
    > ####################
    >
    > #1) Convert your data into a .csv file
    > ### Or use our example data such as with the following commands:
    >
    > data(hotcold);
    > write.csv(x=hotcold, file="hotcold.csv",row.names=FALSE)
    >
    > #2) Invoke the GUI
    >
    > cctgui()
    Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") :
     [tcl] invalid command name "toplevel".
    Calls: cctgui ... tktoplevel -> tkwidget -> tcl -> .Tcl.objv -> structure
    Execution halted
Flavor: r-release-osx-x86_64-mavericks