CRAN Package Check Results for Package CNVassoc

Last updated on 2016-04-30 06:47:22.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 2.2 5.64 73.11 78.75 OK
r-devel-linux-x86_64-fedora-clang 2.2 155.06 OK
r-devel-linux-x86_64-fedora-gcc 2.2 147.72 OK
r-devel-osx-x86_64-clang 2.2 163.63 OK
r-devel-windows-ix86+x86_64 2.2 22.00 155.00 177.00 OK
r-patched-linux-x86_64 2.2 6.14 72.39 78.53 OK
r-patched-solaris-sparc 2.2 683.00 OK
r-patched-solaris-x86 2.2 187.90 OK
r-release-linux-x86_64 2.2 5.92 100.39 106.30 OK
r-release-osx-x86_64-mavericks 2.2 WARN
r-release-windows-ix86+x86_64 2.2 33.00 194.00 227.00 OK
r-oldrel-windows-ix86+x86_64 2.2 44.00 215.00 259.00 OK

Check Details

Version: 2.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘CGHcall’ ‘CGHregions’ ‘CNVtools’ ‘CGHbase’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘CGHcall’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.2
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘CNVassoc_vignette.Rnw’
     ...
    > data(NeveCalled)
    
    > probs <- getProbs(NeveCalled)
    Loading required package: CGHbase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘CGHbase’
    
     When sourcing ‘CNVassoc_vignette.R’:
    Error: unable to find required package ‘CGHbase’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 2.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: CNVassocData
    Loading required package: mixdist
    Loading required package: mclust
    Package 'mclust' version 5.2
    Type 'citation("mclust")' for citing this R package in publications.
    Loading required package: survival
    Loading required package: CGHbase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘CGHbase’
    
    Error: processing vignette 'CNVassoc_vignette.Rnw' failed with diagnostics:
     chunk 40
    Error in .requirePackage(package) :
     unable to find required package ‘CGHbase’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks