CRAN Package Check Results for Package CNVassoc

Last updated on 2014-07-29 13:46:54.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.1 2.55 105.35 107.90 NOTE
r-devel-linux-x86_64-debian-gcc 2.0.1 2.50 103.47 105.97 NOTE
r-devel-linux-x86_64-fedora-clang 2.0.1 225.67 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0.1 222.99 NOTE
r-devel-osx-x86_64-clang 2.0.1 165.38 NOTE
r-devel-windows-ix86+x86_64 2.0.1 17.00 174.00 191.00 NOTE
r-patched-linux-x86_64 2.0.1 2.64 103.39 106.03 NOTE
r-patched-solaris-sparc 2.0.1 1291.70 NOTE
r-patched-solaris-x86 2.0.1 243.90 NOTE
r-release-linux-ix86 2.0.1 3.71 140.07 143.78 NOTE
r-release-linux-x86_64 2.0.1 2.64 105.61 108.25 NOTE
r-release-osx-x86_64-mavericks 2.0.1 WARN
r-release-windows-ix86+x86_64 2.0.1 19.00 179.00 198.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0.1 18.00 172.00 190.00 NOTE

Check Details

Version: 2.0.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     CNVassocData mclust mixdist survival
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     CGHcall CGHregions CNVtools
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0.1
Check: R code for possible problems
Result: NOTE
    fastCNVassoc: no visible global function definition for mclapply
    getProbs.cghCall: no visible global function definition for
     featureNames
    getProbs.cghCall: no visible global function definition for
     chromosomes
    getProbs.cghCall: no visible global function definition for bpstart
    getProbs.cghCall: no visible global function definition for bpend
    getProbs.cghCall: no visible global function definition for calls
    getProbs.cghCall: no visible global function definition for probloss
    getProbs.cghCall: no visible global function definition for probnorm
    getProbs.cghCall: no visible global function definition for probgain
    getProbs.cghCall: no visible global function definition for probamp
    plapply: no visible global function definition for parLapply
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0.1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: CGHcall
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0.1
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in CNVassoc_vignette.Rnw
     ...
    > data(NeveCalled)
    
    > probs <- getProbs(NeveCalled)
    Loading required package: CGHbase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called CGHbase
    
     When sourcing CNVassoc_vignette.R :
    Error: unable to find required package CGHbase
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0.1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: CNVassocData
    Loading required package: mixdist
    Loading required package: mclust
    Package 'mclust' version 4.3
    Loading required package: survival
    Loading required package: splines
    Loading required package: CGHbase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called CGHbase
    
    Error: processing vignette 'CNVassoc_vignette.Rnw' failed with diagnostics:
     chunk 40
    Error in .requirePackage(package) :
     unable to find required package CGHbase
    Execution halted
Flavor: r-release-osx-x86_64-mavericks