CRAN Package Check Results for Package CNVassoc

Last updated on 2017-04-24 12:47:25.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2 6.22 78.63 84.85 NOTE
r-devel-linux-x86_64-debian-gcc 2.2 5.95 75.16 81.11 NOTE
r-devel-linux-x86_64-fedora-clang 2.2 188.52 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 2.2 182.74 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 2.2 50.00 228.00 278.00 OK
r-patched-linux-x86_64 2.2 5.72 76.69 82.41 NOTE
r-patched-solaris-sparc 2.2 1083.30 OK
r-patched-solaris-x86 2.2 218.20 OK
r-release-linux-x86_64 2.2 5.55 78.56 84.10 NOTE
r-release-windows-ix86+x86_64 2.2 34.00 163.00 197.00 OK
r-release-osx-x86_64 2.2 WARN
r-oldrel-windows-ix86+x86_64 2.2 31.00 162.00 193.00 OK
r-oldrel-osx-x86_64 2.2 OK

Check Details

Version: 2.2
Check: compiled code
Result: NOTE
    File ‘CNVassoc/libs/CNVassoc.so’:
     Found no call to: ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.2
Flags: --no-stop-on-test-error
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘CNVtools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.2
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘CNVassoc/libs/CNVassoc.so’:
     Found no call to: ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘CGHcall’ ‘CGHregions’ ‘CNVtools’ ‘Biobase’ ‘CGHbase’
Flavor: r-release-osx-x86_64

Version: 2.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘CGHcall’
Flavor: r-release-osx-x86_64

Version: 2.2
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘CNVassoc_vignette.Rnw’
     ...
    > data(NeveCalled)
    
    > probs <- getProbs(NeveCalled)
    Loading required package: CGHbase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘CGHbase’
    
     When sourcing ‘CNVassoc_vignette.R’:
    Error: unable to find required package ‘CGHbase’
    Execution halted
Flavor: r-release-osx-x86_64

Version: 2.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: CNVassocData
    Loading required package: mixdist
    Loading required package: mclust
    Package 'mclust' version 5.2.3
    Type 'citation("mclust")' for citing this R package in publications.
    Loading required package: survival
    Loading required package: CGHbase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘CGHbase’
    
    Error: processing vignette 'CNVassoc_vignette.Rnw' failed with diagnostics:
     chunk 40
    Error in .requirePackage(package) :
     unable to find required package ‘CGHbase’
    Execution halted
Flavor: r-release-osx-x86_64