CRAN Package Check Results for Package CNVassoc

Last updated on 2015-04-28 17:46:47.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1 3.36 90.54 93.90 OK
r-devel-linux-x86_64-debian-gcc 2.1 4.80 88.97 93.77 OK
r-devel-linux-x86_64-fedora-clang 2.1 187.21 OK
r-devel-linux-x86_64-fedora-gcc 2.1 180.70 OK
r-devel-osx-x86_64-clang 2.1 146.92 OK
r-devel-windows-ix86+x86_64 2.1 29.00 150.00 179.00 OK
r-patched-linux-x86_64 2.1 3.90 90.03 93.93 OK
r-patched-solaris-sparc 2.1 1253.20 OK
r-patched-solaris-x86 2.1 218.30 OK
r-release-linux-x86_64 2.1 3.64 88.76 92.40 OK
r-release-osx-x86_64-mavericks 2.1 WARN
r-release-osx-x86_64-snowleopard 2.1 WARN
r-release-windows-ix86+x86_64 2.1 27.00 159.00 186.00 OK
r-oldrel-windows-ix86+x86_64 2.1 21.00 165.00 186.00 OK

Check Details

Version: 2.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘CGHcall’ ‘CGHregions’ ‘CNVtools’ ‘CGHbase’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘CGHcall’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 2.1
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘CNVassoc_vignette.Rnw’
     ...
    > data(NeveCalled)
    
    > probs <- getProbs(NeveCalled)
    Loading required package: CGHbase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘CGHbase’
    
     When sourcing ‘CNVassoc_vignette.R’:
    Error: unable to find required package ‘CGHbase’
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 2.1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: CNVassocData
    Loading required package: mixdist
    Loading required package: mclust
    Package 'mclust' version 5.0.0
    Type 'citation("mclust")' for citing this R package in publications.
    Loading required package: survival
    Loading required package: CGHbase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘CGHbase’
    
    Error: processing vignette 'CNVassoc_vignette.Rnw' failed with diagnostics:
     chunk 40
    Error in .requirePackage(package) :
     unable to find required package ‘CGHbase’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 2.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘CGHcall’ ‘CGHregions’ ‘CNVtools’ ‘Biobase’ ‘CGHbase’
Flavor: r-release-osx-x86_64-snowleopard

Version: 2.1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: CNVassocData
    Loading required package: mixdist
    Loading required package: mclust
    Package 'mclust' version 4.4
    Type 'citation("mclust")' for citing this R package in publications.
    Loading required package: survival
    Loading required package: CGHbase
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘CGHbase’
    
    Error: processing vignette 'CNVassoc_vignette.Rnw' failed with diagnostics:
     chunk 40
    Error in .requirePackage(package) :
     unable to find required package ‘CGHbase’
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard