CRAN Package Check Results for Package Causata

Last updated on 2015-08-28 08:46:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.2-0 4.98 144.72 149.70 NOTE
r-devel-linux-x86_64-debian-gcc 4.2-0 4.83 148.01 152.84 NOTE
r-devel-linux-x86_64-fedora-clang 4.2-0 299.76 NOTE
r-devel-linux-x86_64-fedora-gcc 4.2-0 277.34 NOTE
r-devel-osx-x86_64-clang 4.2-0 235.34 NOTE
r-patched-linux-x86_64 4.2-0 5.35 147.24 152.58 NOTE
r-release-linux-x86_64 4.2-0 5.18 143.98 149.16 NOTE
r-release-osx-x86_64-mavericks 4.2-0 WARN
r-oldrel-windows-ix86+x86_64 4.1-0 1.00 2.00 3.00 ERROR

Check Details

Version: 4.2-0
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 4.2-0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘integration_tests’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 4.2-0
Check: R code for possible problems
Result: NOTE
    BinaryCut: no visible global function definition for ‘quantile’
    CleanNaFromContinuousFunction: no visible global function definition
     for ‘median’
    CleanNaFromContinuousFunction: no visible global function definition
     for ‘na.omit’
    GetMetadata.Connect: no visible global function definition for
     ‘dbGetQuery’
    GetRawData.Connect: no visible global function definition for
     ‘dbGetQuery’
    Linearity: no visible global function definition for ‘median’
    PredictivePowerCv: no visible global function definition for ‘sd’
    ReadCausataCsv: no visible global function definition for ‘read.csv’
    ToPmml.GlmnetModelDefinition: no visible global function definition for
     ‘coef’
    ToPmml.GlmnetModelDefinition: no visible global function definition for
     ‘terms.formula’
    ValidateModel: no visible global function definition for ‘predict’
    predict.GlmnetModelDefinition: no visible global function definition
     for ‘model.matrix’
    predict.GlmnetModelDefinition: no visible binding for global variable
     ‘contrasts’
    predict.GlmnetModelDefinition: no visible global function definition
     for ‘predict’
    Undefined global functions or variables:
     coef contrasts dbGetQuery median model.matrix na.omit predict
     quantile read.csv sd terms.formula
    Consider adding
     importFrom("stats", "coef", "contrasts", "median", "model.matrix",
     "na.omit", "predict", "quantile", "sd", "terms.formula")
     importFrom("utils", "read.csv")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 4.2-0
Check: line endings in Makefiles
Result: NOTE
    Found the following Makefile(s) without a final LF:
     inst/doc/Makefile
    Some ‘make’ programs ignore lines not ending in LF.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 4.2-0
Check: files in ‘vignettes’
Result: NOTE
    The following files look like leftovers/mistakes:
     ‘Causata-vignette.log’
    Please remove them from your package.
    The following directory looks like a leftover from 'knitr':
     ‘figure’
    Please remove from your package.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 4.2-0
Check: R code for possible problems
Result: NOTE
    GetMetadata.Connect: no visible global function definition for
     ‘dbGetQuery’
    GetRawData.Connect: no visible global function definition for
     ‘dbGetQuery’
    Undefined global functions or variables:
     dbGetQuery
Flavor: r-devel-osx-x86_64-clang

Version: 4.2-0
Check: R code for possible problems
Result: NOTE
    GetMetadata.Connect: no visible global function definition for
     ‘dbGetQuery’
    GetRawData.Connect: no visible global function definition for
     ‘dbGetQuery’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 4.2-0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘pROC’
Flavor: r-release-osx-x86_64-mavericks

Version: 4.2-0
Check: files in ‘vignettes’
Result: NOTE
    The following files look like leftovers/mistakes:
     ‘Causata-vignette.log’
    Please remove them from your package.
Flavor: r-release-osx-x86_64-mavericks

Version: 4.2-0
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘Causata-vignette.rnw’
     ...
    Loading required package: Matrix
    Loading required package: foreach
    Loaded glmnet 2.0-2
    
    
    > library(pROC)
    
     When sourcing ‘Causata-vignette.R’:
    Error: there is no package called ‘pROC’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 4.2-0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: Matrix
    Loading required package: foreach
    Loaded glmnet 2.0-2
    
    Quitting from lines 113-122 (Causata-vignette.rnw)
    Error: processing vignette 'Causata-vignette.rnw' failed with diagnostics:
    there is no package called 'pROC'
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 4.1-0
Check: package dependencies
Result: ERROR
    Package required but not available: 'RMySQL'
    
    Package suggested but not available for checking: 'doMC'
    
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-oldrel-windows-ix86+x86_64