CRAN Package Check Results for Package CePa

Last updated on 2014-08-01 01:48:16.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.5 1.37 26.74 28.11 NOTE
r-devel-linux-x86_64-debian-gcc 0.5 1.45 26.14 27.59 NOTE
r-devel-linux-x86_64-fedora-clang 0.5 63.73 NOTE
r-devel-linux-x86_64-fedora-gcc 0.5 62.15 NOTE
r-devel-osx-x86_64-clang 0.5 63.99 NOTE
r-devel-windows-ix86+x86_64 0.5 5.00 42.00 47.00 NOTE
r-patched-linux-x86_64 0.5 1.44 26.45 27.90 NOTE
r-patched-solaris-sparc 0.5 328.30 NOTE
r-patched-solaris-x86 0.5 87.10 NOTE
r-release-linux-ix86 0.5 1.80 37.20 39.00 NOTE
r-release-linux-x86_64 0.5 1.90 26.76 28.66 NOTE
r-release-osx-x86_64-mavericks 0.5 NOTE
r-release-windows-ix86+x86_64 0.5 9.00 59.00 68.00 NOTE
r-oldrel-windows-ix86+x86_64 0.5 8.00 58.00 66.00 NOTE

Check Details

Version: 0.5
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     igraph snow
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.5
Check: Rd line widths
Result: NOTE
    Rd file 'cepa.Rd':
     \usage lines wider than 90 characters:
     cepa(dif = NULL, bk = NULL, mat = NULL, label = NULL, pc, pathway = NULL, id = NULL, cen = "equal.weight",
     cen.name = if(is.function(cen)) deparse(substitute(cen)) else if(mode(cen) == "name") deparse(cen) else cen,
    
    Rd file 'cepa.all.Rd':
     \examples lines wider than 100 characters:
     label = read.cls("http://mcube.nju.edu.cn/jwang/lab/soft/cepa/P53.cls", treatment="MUT", control="WT")
    
    Rd file 'cepa.all.parallel.Rd':
     \usage lines wider than 90 characters:
     cepa.all.parallel(dif = NULL, bk = NULL, mat = NULL, label = NULL, pc, cen = default.centralities,
     \examples lines wider than 100 characters:
     label = read.cls("http://mcube.nju.edu.cn/jwang/lab/soft/cepa/P53.cls", treatment="MUT", control="WT")
    
    Rd file 'cepa.ora.Rd':
     \usage lines wider than 90 characters:
     cen.name = if(is.function(cen)) deparse(substitute(cen)) else if(mode(cen) == "name") deparse(cen) else cen,
    
    Rd file 'cepa.univariate.Rd':
     \usage lines wider than 90 characters:
     cen.name = if(is.function(cen)) deparse(substitute(cen)) else if(mode(cen) == "name") deparse(cen) else cen,
    
    Rd file 'cepa.univariate.all.Rd':
     \examples lines wider than 100 characters:
     label = read.cls("http://mcube.nju.edu.cn/jwang/lab/soft/cepa/P53.cls", treatment="MUT", control="WT")
    
    Rd file 'plotGraph.Rd':
     \usage lines wider than 90 characters:
     graph.node.max.size = 20, graph.node.min.size = 3, graph.layout.method = NULL, ...)
    
    Rd file 'read.cls.Rd':
     \examples lines wider than 100 characters:
     label = read.cls("http://mcube.nju.edu.cn/jwang/lab/soft/cepa/P53.cls", treatment="MUT", control="WT")
    
    Rd file 'report.Rd':
     \usage lines wider than 90 characters:
     template.file = paste(system.file(package = "CePa"), "/extdata/cepa.template", sep=""),
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc