CRAN Package Check Results for Package ChemoSpec

Last updated on 2015-07-03 13:46:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.0.6 3.86 53.06 56.92 NOTE
r-devel-linux-x86_64-debian-gcc 4.0.6 3.55 52.94 56.50 NOTE
r-devel-linux-x86_64-fedora-clang 4.0.6 109.80 NOTE
r-devel-linux-x86_64-fedora-gcc 4.0.6 104.12 NOTE
r-devel-osx-x86_64-clang 4.0.6 98.18 OK
r-devel-windows-ix86+x86_64 4.0.6 9.00 80.00 89.00 NOTE
r-patched-linux-x86_64 4.0.6 3.70 56.27 59.97 OK
r-patched-solaris-sparc 4.0.6 502.70 NOTE --no-build-vignettes
r-patched-solaris-x86 4.0.6 141.00 OK
r-release-linux-x86_64 4.0.6 3.51 53.33 56.84 OK
r-release-osx-x86_64-mavericks 4.0.6 ERROR
r-release-windows-ix86+x86_64 4.0.6 11.00 81.00 92.00 OK
r-oldrel-windows-ix86+x86_64 4.0.6 11.00 94.00 105.00 OK

Check Details

Version: 4.0.6
Check: R code for possible problems
Result: NOTE
    baselineSpectra: no visible global function definition for ‘plot’
    c_pcaSpectra: no visible binding for global variable ‘sd’
    c_pcaSpectra: no visible global function definition for ‘prcomp’
    check4Gaps: no visible global function definition for ‘lines’
    check4Gaps: no visible global function definition for ‘rect’
    chkSpectra: no visible global function definition for ‘str’
    chooseLvls : sH: no visible global function definition for ‘par’
    chooseLvls : sH: no visible global function definition for ‘layout’
    chooseLvls : sH: no visible global function definition for ‘hist’
    chooseLvls : sH: no visible global function definition for ‘abline’
    chooseLvls : sH: no visible global function definition for ‘rainbow’
    chooseLvls : sH: no visible global function definition for ‘plot’
    chooseLvls : sH: no visible global function definition for ‘rect’
    chooseLvls: no visible global function definition for ‘ecdf’
    colLeaf: no visible global function definition for ‘is.leaf’
    coordProjCS: no visible global function definition for ‘par’
    coordProjCS: no visible global function definition for ‘plot’
    coordProjCS: no visible global function definition for ‘title’
    coordProjCS: no visible global function definition for ‘points’
    coordProjCS: no visible global function definition for ‘quantile’
    corSpectra: no visible global function definition for ‘cor’
    corSpectra: no visible global function definition for ‘cov’
    corSpectra : decor: no visible global function definition for ‘rainbow’
    corSpectra: no visible global function definition for ‘image’
    corSpectra: no visible global function definition for ‘axis’
    corSpectra: no visible global function definition for ‘abline’
    corSpectra: no visible global function definition for ‘contour’
    covSpectra: no visible global function definition for ‘cor’
    covSpectra: no visible global function definition for ‘cov’
    covSpectra: no visible global function definition for ‘rainbow’
    covSpectra: no visible global function definition for ‘plot’
    covSpectra: no visible global function definition for ‘segments’
    covSpectra: no visible global function definition for ‘abline’
    covSpectraJS: no visible global function definition for ‘cor’
    covSpectraJS: no visible global function definition for ‘cov’
    covSpectraJS: no visible global function definition for ‘rainbow’
    covSpectraJS: no visible global function definition for ‘browseURL’
    cv_pcaSpectra: no visible global function definition for ‘sd’
    cv_pcaSpectra: no visible global function definition for ‘boxplot’
    cv_pcaSpectra: no visible global function definition for ‘legend’
    evalClusters: no visible binding for global variable ‘hclust’
    evalClusters: no visible global function definition for ‘cutree’
    files2SpectraObject: no visible global function definition for
     ‘read.csv’
    files2SpectraObject: no visible global function definition for
     ‘read.csv2’
    getMaxCovByFreq: no visible global function definition for ‘quantile’
    hcaScores: no visible global function definition for ‘hclust’
    hcaSpectra: no visible global function definition for ‘hclust’
    hypTestScores: no visible global function definition for ‘manova’
    hypTestScores: no visible global function definition for ‘aov’
    labelExtremes: no visible global function definition for ‘quantile’
    labelExtremes: no visible global function definition for ‘text’
    labelExtremes3d: no visible global function definition for ‘quantile’
    loopThruSpectra: no visible global function definition for
     ‘devAskNewPage’
    makeEllipsoid: no visible global function definition for ‘rnorm’
    makeEllipsoid: no visible global function definition for ‘var’
    makeEllipsoid: no visible global function definition for ‘qf’
    mclustSpectra: no visible global function definition for ‘title’
    mclustSpectra: no visible global function definition for ‘mtext’
    normSpectra: no visible binding for global variable ‘median’
    pcaDiag: no visible global function definition for ‘qchisq’
    pcaDiag: no visible global function definition for ‘median’
    pcaDiag: no visible global function definition for ‘mad’
    pcaDiag: no visible global function definition for ‘qnorm’
    pcaDiag: no visible global function definition for ‘abline’
    plot2Loadings: no visible global function definition for ‘plot’
    plot2Loadings: no visible global function definition for ‘abline’
    plot2Loadings: no visible global function definition for ‘legend’
    plotHCA: no visible global function definition for ‘as.dendrogram’
    plotHCA: no visible global function definition for ‘dendrapply’
    plotHCA: no visible global function definition for ‘plot’
    plotHCA: no visible global function definition for ‘legend’
    plotLoadings: no visible global function definition for ‘relevel’
    plotLoadings: no visible global function definition for ‘plot’
    plotScores: no visible global function definition for ‘plot’
    plotScores: no visible binding for global variable ‘lines’
    plotScores: no visible global function definition for ‘legend’
    plotScores3D: no visible global function definition for ‘plot’
    plotScoresCor: no visible global function definition for ‘cov’
    plotScoresCor: no visible global function definition for ‘qchisq’
    plotScoresCor: no visible global function definition for ‘cor’
    plotScoresDecoration: no visible global function definition for ‘title’
    plotScoresDecoration: no visible global function definition for
     ‘legend’
    plotScree: no visible global function definition for ‘plot’
    plotScree: no visible global function definition for ‘axis’
    plotScree: no visible global function definition for ‘points’
    plotScree: no visible global function definition for ‘abline’
    plotScree: no visible global function definition for ‘legend’
    plotScree2: no visible global function definition for ‘plot’
    plotScree2: no visible global function definition for ‘axis’
    plotScree2: no visible global function definition for ‘text’
    plotScree2: no visible global function definition for ‘abline’
    plotScree2: no visible global function definition for ‘legend’
    plotSpectra: no visible global function definition for ‘plot’
    plotSpectra: no visible global function definition for ‘grid’
    plotSpectra: no visible global function definition for ‘text’
    plotSpectra: no visible global function definition for ‘points’
    plotSpectraJS: no visible global function definition for ‘browseURL’
    rowDist: no visible global function definition for ‘dist’
    rowDist: no visible global function definition for ‘as.dist’
    sPlotSpectra: no visible global function definition for ‘sd’
    sPlotSpectra: no visible global function definition for ‘plot’
    sPlotSpectra: no visible global function definition for ‘abline’
    sPlotSpectra: no visible global function definition for ‘legend’
    sampleDistSpectra: no visible global function definition for ‘rainbow’
    seX: no visible global function definition for ‘sd’
    seX: no visible global function definition for ‘na.omit’
    seXy: no visible global function definition for ‘na.omit’
    seXy95: no visible global function definition for ‘na.omit’
    seXyIqr: no visible global function definition for ‘fivenum’
    seXyMad: no visible global function definition for ‘median’
    seXyMad: no visible global function definition for ‘na.omit’
    seXyMad: no visible global function definition for ‘mad’
    shrinkLeaf: no visible global function definition for ‘is.leaf’
    surveySpectra: no visible global function definition for ‘plot’
    surveySpectra: no visible binding for global variable ‘sd’
    surveySpectra2: no visible binding for global variable ‘sd’
    surveySpectra2: no visible global function definition for ‘plot’
    surveySpectra2: no visible global function definition for ‘lines’
    surveySpectra2: no visible global function definition for ‘text’
    Undefined global functions or variables:
     abline aov as.dendrogram as.dist axis boxplot browseURL contour cor
     cov cutree dendrapply devAskNewPage dist ecdf fivenum grid hclust
     hist image is.leaf layout legend lines mad manova median mtext
     na.omit par plot points prcomp qchisq qf qnorm quantile rainbow
     read.csv read.csv2 rect relevel rnorm sd segments str text title var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 4.0.6
Flags: --no-build-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘js’
Flavor: r-patched-solaris-sparc

Version: 4.0.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘speaq’
Flavor: r-release-osx-x86_64-mavericks

Version: 4.0.6
Check: examples
Result: ERROR
    Running examples in ‘ChemoSpec-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: clupaSpectra
    > ### Title: Conduct Hierarchical Cluster-Based Peak Alignment on a Spectra
    > ### Object
    > ### Aliases: clupaSpectra
    > ### Keywords: utilities
    >
    > ### ** Examples
    >
    > data(alignMUD)
    > plotSpectra(alignMUD, which = 1:20, lab.pos = 4.5, offset = 0.1,
    + yrange = c(0, 1900), amp = 500, xlim = c(1.5, 1.8),
    + main = "Misaligned NMR Spectra (alignMUD)")
    > aMUD <- clupaSpectra(alignMUD)
    Error in clupaSpectra(alignMUD) :
     You need to install package speaq to use this function
    Execution halted
Flavor: r-release-osx-x86_64-mavericks