CRAN Package Check Results for Package ClinReport

Last updated on 2019-06-25 11:50:11 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.1.12 6.97 114.70 121.67 OK
r-devel-linux-x86_64-debian-gcc 0.9.1.12 6.10 103.86 109.96 OK
r-devel-linux-x86_64-fedora-clang 0.9.1.12 132.04 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9.1.12 122.10 NOTE
r-devel-windows-ix86+x86_64 0.9.1.12 28.00 147.00 175.00 OK
r-patched-linux-x86_64 0.9.1.12 7.71 107.58 115.29 OK
r-patched-solaris-x86 0.9.1.12 170.10 NOTE
r-release-linux-x86_64 0.9.1.12 6.04 106.00 112.04 OK
r-release-windows-ix86+x86_64 0.9.1.12 16.00 119.00 135.00 OK
r-release-osx-x86_64 0.9.1.12 WARN
r-oldrel-windows-ix86+x86_64 0.9.1.12 11.00 99.00 110.00 OK
r-oldrel-osx-x86_64 0.9.1.12 WARN

Check Details

Version: 0.9.1.12
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘emmeans’ ‘utils’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.9.1.12
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘clinreport_graphics.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:ClinReport':
    
     desc
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    
    Attaching package: 'nlme'
    
    The following object is masked from 'package:dplyr':
    
     collapse
    
    Loading required package: carData
    
    Attaching package: 'car'
    
    The following object is masked from 'package:dplyr':
    
     recode
    
    --- finished re-building ‘clinreport_graphics.Rmd’
    
    --- re-building ‘clinreport_modify_outputs.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:ClinReport':
    
     desc
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    
    Attaching package: 'nlme'
    
    The following object is masked from 'package:dplyr':
    
     collapse
    
    Loading required package: carData
    
    Attaching package: 'car'
    
    The following object is masked from 'package:dplyr':
    
     recode
    
    Quitting from lines 60-71 (clinreport_modify_outputs.Rmd)
    Error: processing vignette 'clinreport_modify_outputs.Rmd' failed with diagnostics:
    `render_flextable` needs to be used as a renderer for a knitr/rmarkdown R code chunk (render by rmarkdown)
    --- failed re-building ‘clinreport_modify_outputs.Rmd’
    
    --- re-building ‘clinreport_vignette_get_started.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following object is masked from 'package:ClinReport':
    
     desc
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    
    Attaching package: 'nlme'
    
    The following object is masked from 'package:dplyr':
    
     collapse
    
    Loading required package: carData
    
    Attaching package: 'car'
    
    The following object is masked from 'package:dplyr':
    
     recode
    
    Quitting from lines 82-84 (clinreport_vignette_get_started.Rmd)
    Error: processing vignette 'clinreport_vignette_get_started.Rmd' failed with diagnostics:
    `render_flextable` needs to be used as a renderer for a knitr/rmarkdown R code chunk (render by rmarkdown)
    --- failed re-building ‘clinreport_vignette_get_started.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘clinreport_modify_outputs.Rmd’ ‘clinreport_vignette_get_started.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.9.1.12
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/65-nonlatin.conf", line 6: invalid attribute 'version'
    Fontconfig warning: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/65-nonlatin.conf", line 8: unknown element "description"
    Fontconfig warning: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/69-unifont.conf", line 4: unknown element "its:rules"
    Fontconfig warning: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/69-unifont.conf", line 5: unknown element "its:translateRule"
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/69-unifont.conf", line 5: invalid attribute 'translate'
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/69-unifont.conf", line 5: invalid attribute 'selector'
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/69-unifont.conf", line 6: invalid attribute 'xmlns:its'
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/69-unifont.conf", line 6: invalid attribute 'version'
    Fontconfig warning: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/80-delicious.conf", line 4: unknown element "its:rules"
    Fontconfig warning: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/80-delicious.conf", line 5: unknown element "its:translateRule"
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/80-delicious.conf", line 5: invalid attribute 'translate'
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/80-delicious.conf", line 5: invalid attribute 'selector'
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/80-delicious.conf", line 6: invalid attribute 'xmlns:its'
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/80-delicious.conf", line 6: invalid attribute 'version'
    Fontconfig warning: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/90-synthetic.conf", line 4: unknown element "its:rules"
    Fontconfig warning: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/90-synthetic.conf", line 5: unknown element "its:translateRule"
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/90-synthetic.conf", line 5: invalid attribute 'translate'
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/90-synthetic.conf", line 5: invalid attribute 'selector'
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/90-synthetic.conf", line 6: invalid attribute 'xmlns:its'
    Fontconfig error: "/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/Rlib/3.5/magick/etc/fonts/conf.d/90-synthetic.conf", line 6: invalid attribute 'version'
    Fontconfig error: Cannot load default config file
    Quitting from lines 60-71 (clinreport_modify_outputs.Rmd)
    Error: processing vignette 'clinreport_modify_outputs.Rmd' failed with diagnostics:
    `render_flextable` needs to be used as a renderer for a knitr/rmarkdown R code chunk (render by rmarkdown)
    Execution halted
Flavor: r-oldrel-osx-x86_64