CRAN Package Check Results for Package CoxBoost

Last updated on 2014-07-29 23:47:06.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4 3.78 44.08 47.86 NOTE
r-devel-linux-x86_64-debian-gcc 1.4 3.76 41.75 45.51 NOTE
r-devel-linux-x86_64-fedora-clang 1.4 108.72 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4 105.70 NOTE
r-devel-osx-x86_64-clang 1.4 86.71 NOTE
r-devel-windows-ix86+x86_64 1.4 10.00 81.00 91.00 NOTE
r-patched-linux-x86_64 1.4 3.79 43.86 47.66 NOTE
r-patched-solaris-sparc 1.4 590.30 NOTE
r-patched-solaris-x86 1.4 139.80 NOTE
r-release-linux-ix86 1.4 4.76 53.00 57.76 NOTE
r-release-linux-x86_64 1.4 3.88 42.80 46.69 NOTE
r-release-osx-x86_64-mavericks 1.4 NOTE
r-release-windows-ix86+x86_64 1.4 13.00 88.00 101.00 NOTE
r-oldrel-windows-ix86+x86_64 1.4 11.00 81.00 92.00 NOTE

Check Details

Version: 1.4
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     Matrix prodlim
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.4
Check: foreign function calls
Result: NOTE
    Calls with DUP = FALSE:
     .C("find_best01", x.double.vec, as.integer(n), as.integer(p),
     uncens.C, as.integer(length(uncens)), as.double(actual.beta),
     as.double(actual.risk.score), as.double(actual.linear.predictor),
     weight.double.vec, max.nz.vec, max.1.vec, as.double(weightmat.times.risk),
     as.double(weightmat.times.risk.sum), as.double(penalty),
     warncount = integer(1), min.index = integer(1), min.deviance = double(1),
     min.beta.delta = double(1), score.vec = double(p), DUP = FALSE,
     NAOK = TRUE)
     .C("find_best", x.double.vec, as.integer(n), as.integer(p), uncens.C,
     as.integer(length(uncens)), as.double(actual.beta), as.double(actual.risk.score),
     as.double(actual.linear.predictor), weight.double.vec, max.nz.vec,
     max.1.vec, as.double(weightmat.times.risk), as.double(weightmat.times.risk.sum),
     as.double(penalty), as.integer(criterion == "pscore" || criterion ==
     "hpscore"), warncount = integer(1), min.index = integer(1),
     min.deviance = double(1), min.beta.delta = double(1), score.vec = double(p),
     DUP = FALSE, NAOK = TRUE)
     .C("find_best_candidate", x.double.vec, as.integer(n), as.integer(p),
     uncens.C, as.integer(length(uncens)), as.double(actual.beta),
     as.double(actual.risk.score), as.double(actual.linear.predictor),
     weight.double.vec, max.nz.vec, max.1.vec, as.double(weightmat.times.risk),
     as.double(weightmat.times.risk.sum), as.double(penalty),
     as.integer(criterion == "pscore" || criterion == "hpscore"),
     as.integer(presel.index - 1), as.integer(length(presel.index)),
     warncount = integer(1), min.index = integer(1), min.deviance = double(1),
     min.beta.delta = double(1), score.vec = double(p), DUP = FALSE,
     NAOK = TRUE)
     .C("find_best_candidate", x.double.vec, as.integer(n), as.integer(p),
     uncens.C, as.integer(length(uncens)), as.double(actual.beta),
     as.double(actual.risk.score), as.double(actual.linear.predictor),
     weight.double.vec, max.nz.vec, max.1.vec, as.double(weightmat.times.risk),
     as.double(weightmat.times.risk.sum), as.double(penalty),
     as.integer(criterion == "pscore"), as.integer(new.candidates -
     1), as.integer(length(new.candidates)), warncount = integer(1),
     min.index = integer(1), min.deviance = double(1), min.beta.delta = double(1),
     score.vec = double(p), DUP = FALSE, NAOK = TRUE)
     .C("get_I_vec", as.double(x[subset.time.order, pen.index[I.index]]),
     as.integer(n), as.integer(length(I.index)), as.integer(length(uncens)),
     as.double(weightmat.times.risk), as.double(weightmat.times.risk.sum),
     I.vec = double(length(I.index)), DUP = FALSE)
    DUP = FALSE is deprecated and may be disabled in future versions of R.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.4
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     changeLog
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc