CRAN Package Check Results for Package CpGassoc

Last updated on 2015-07-03 03:46:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.50 0.97 48.70 49.67 NOTE
r-devel-linux-x86_64-debian-gcc 2.50 0.90 51.03 51.94 NOTE
r-devel-linux-x86_64-fedora-clang 2.50 92.77 NOTE
r-devel-linux-x86_64-fedora-gcc 2.50 92.38 NOTE
r-devel-osx-x86_64-clang 2.50 79.68 OK
r-devel-windows-ix86+x86_64 2.50 4.00 75.00 79.00 NOTE
r-patched-linux-x86_64 2.50 0.92 50.55 51.47 OK
r-patched-solaris-sparc 2.50 488.70 OK
r-patched-solaris-x86 2.50 123.70 OK
r-release-linux-x86_64 2.50 0.94 51.20 52.13 OK
r-release-osx-x86_64-mavericks 2.50 OK
r-release-windows-ix86+x86_64 2.50 3.00 70.00 73.00 OK
r-oldrel-windows-ix86+x86_64 2.50 5.00 75.00 80.00 OK

Check Details

Version: 2.50
Check: R code for possible problems
Result: NOTE
    cpg.GC: no visible global function definition for ‘p.adjust’
    cpg.GC: no visible global function definition for ‘coef’
    cpg.GC: no visible global function definition for ‘median’
    cpg.GC: no visible global function definition for ‘qchisq’
    cpg.assoc: no visible global function definition for ‘memory.limit’
    cpg.assoc: no visible global function definition for ‘object.size’
    cpg.combine: no visible binding for global variable ‘is’
    cpg.combine: no visible binding for global variable ‘coef’
    cpg.combine: no visible global function definition for ‘median’
    cpg.combine: no visible global function definition for ‘qchisq’
    cpg.combine: no visible global function definition for ‘pf’
    cpg.combine: no visible global function definition for ‘p.adjust’
    cpg.everything.matrix : ranmixed: no visible global function definition
     for ‘anova’
    cpg.everything.matrix : ranmixed: no visible binding for global
     variable ‘na.omit’
    cpg.everything.matrix : ranmixed: no visible global function definition
     for ‘df’
    cpg.perm: no visible global function definition for ‘p.adjust’
    cpg.perm: no visible binding for global variable ‘quantile’
    cpg.qc: no visible global function definition for ‘median’
    cpg.work: no visible global function definition for ‘model.matrix’
    cpg.work: no visible global function definition for ‘pf’
    cpg.work: no visible global function definition for ‘lm’
    cpg.work: no visible global function definition for ‘coef’
    cpg.work: no visible global function definition for ‘aov’
    cpg.work: no visible global function definition for ‘anova’
    cpg.work: no visible global function definition for ‘tail’
    cpg.work: no visible global function definition for ‘median’
    cpg.work: no visible global function definition for ‘qchisq’
    cpg.work: no visible global function definition for ‘p.adjust’
    cpgassocsummary: no visible global function definition for ‘pt’
    cpgassocsummary: no visible global function definition for ‘pf’
    design.NULL: no visible global function definition for ‘model.matrix’
    design.data.frame: no visible global function definition for
     ‘model.matrix’
    design.data.frame: no visible global function definition for ‘formula’
    manhattan: no visible global function definition for ‘postscript’
    manhattan: no visible global function definition for ‘pdf’
    manhattan: no visible global function definition for ‘par’
    manhattan: no visible global function definition for ‘plot’
    manhattan: no visible global function definition for ‘points’
    manhattan: no visible global function definition for ‘abline’
    manhattan: no visible global function definition for ‘text’
    manhattan: no visible global function definition for ‘axis’
    manhattan: no visible global function definition for ‘dev.off’
    manhattan: no visible global function definition for ‘dev.copy2pdf’
    manhattan.reflect: no visible global function definition for
     ‘postscript’
    manhattan.reflect: no visible global function definition for ‘pdf’
    manhattan.reflect: no visible global function definition for ‘par’
    manhattan.reflect: no visible global function definition for ‘plot’
    manhattan.reflect: no visible global function definition for ‘points’
    manhattan.reflect: no visible global function definition for ‘abline’
    manhattan.reflect: no visible global function definition for ‘text’
    manhattan.reflect: no visible global function definition for ‘axis’
    manhattan.reflect: no visible global function definition for ‘dev.off’
    manhattan.reflect: no visible global function definition for
     ‘dev.copy2pdf’
    plot.cpg: no visible global function definition for ‘median’
    plot.cpg: no visible global function definition for ‘qchisq’
    plot.cpg: no visible global function definition for ‘p.adjust’
    plot.cpg: no visible global function definition for ‘postscript’
    plot.cpg: no visible global function definition for ‘pdf’
    plot.cpg: no visible global function definition for ‘qbeta’
    plot.cpg: no visible global function definition for ‘plot’
    plot.cpg: no visible global function definition for ‘legend’
    plot.cpg: no visible global function definition for ‘abline’
    plot.cpg: no visible global function definition for ‘points’
    plot.cpg: no visible global function definition for ‘qt’
    plot.cpg: no visible global function definition for ‘qqplot’
    plot.cpg: no visible global function definition for ‘dev.off’
    plot.cpg: no visible global function definition for ‘dev.copy2pdf’
    plot.cpg.perm: no visible global function definition for ‘postscript’
    plot.cpg.perm: no visible global function definition for ‘pdf’
    plot.cpg.perm: no visible global function definition for ‘median’
    plot.cpg.perm: no visible global function definition for ‘qchisq’
    plot.cpg.perm: no visible global function definition for ‘p.adjust’
    plot.cpg.perm: no visible global function definition for ‘plot’
    plot.cpg.perm: no visible global function definition for ‘legend’
    plot.cpg.perm: no visible global function definition for ‘points’
    plot.cpg.perm: no visible global function definition for ‘abline’
    plot.cpg.perm: no visible global function definition for ‘qt’
    plot.cpg.perm: no visible global function definition for ‘qqplot’
    plot.cpg.perm: no visible global function definition for ‘dev.off’
    plot.cpg.perm: no visible global function definition for ‘dev.copy2pdf’
    scatterplot: no visible global function definition for ‘postscript’
    scatterplot: no visible global function definition for ‘pdf’
    scatterplot: no visible global function definition for ‘boxplot’
    scatterplot: no visible global function definition for ‘plot’
    scatterplot: no visible global function definition for ‘abline’
    scatterplot: no visible global function definition for ‘points’
    scatterplot: no visible global function definition for ‘dev.off’
    scatterplot: no visible global function definition for ‘dev.copy2pdf’
    summary.cpg: no visible global function definition for ‘par’
    summary.cpg: no visible global function definition for ‘plot’
    Undefined global functions or variables:
     abline anova aov axis boxplot coef dev.copy2pdf dev.off df formula is
     legend lm median memory.limit model.matrix na.omit object.size
     p.adjust par pdf pf plot points postscript pt qbeta qchisq qqplot qt
     quantile tail text
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.50
Check: R code for possible problems
Result: NOTE
    cpg.GC: no visible global function definition for ‘p.adjust’
    cpg.GC: no visible global function definition for ‘coef’
    cpg.GC: no visible global function definition for ‘median’
    cpg.GC: no visible global function definition for ‘qchisq’
    cpg.assoc: no visible global function definition for ‘memory.limit’
    cpg.assoc: no visible global function definition for ‘object.size’
    cpg.combine: no visible binding for global variable ‘is’
    cpg.combine: no visible binding for global variable ‘coef’
    cpg.combine: no visible global function definition for ‘median’
    cpg.combine: no visible global function definition for ‘qchisq’
    cpg.combine: no visible global function definition for ‘pf’
    cpg.combine: no visible global function definition for ‘p.adjust’
    cpg.everything.matrix : ranmixed: no visible global function definition
     for ‘anova’
    cpg.everything.matrix : ranmixed: no visible binding for global
     variable ‘na.omit’
    cpg.everything.matrix : ranmixed: no visible global function definition
     for ‘df’
    cpg.perm: no visible global function definition for ‘p.adjust’
    cpg.perm: no visible binding for global variable ‘quantile’
    cpg.qc: no visible global function definition for ‘median’
    cpg.work: no visible global function definition for ‘model.matrix’
    cpg.work: no visible global function definition for ‘pf’
    cpg.work: no visible global function definition for ‘lm’
    cpg.work: no visible global function definition for ‘coef’
    cpg.work: no visible global function definition for ‘aov’
    cpg.work: no visible global function definition for ‘anova’
    cpg.work: no visible global function definition for ‘tail’
    cpg.work: no visible global function definition for ‘median’
    cpg.work: no visible global function definition for ‘qchisq’
    cpg.work: no visible global function definition for ‘p.adjust’
    cpgassocsummary: no visible global function definition for ‘pt’
    cpgassocsummary: no visible global function definition for ‘pf’
    design.NULL: no visible global function definition for ‘model.matrix’
    design.data.frame: no visible global function definition for
     ‘model.matrix’
    design.data.frame: no visible global function definition for ‘formula’
    manhattan: no visible global function definition for ‘postscript’
    manhattan: no visible global function definition for ‘pdf’
    manhattan: no visible global function definition for ‘par’
    manhattan: no visible global function definition for ‘plot’
    manhattan: no visible global function definition for ‘points’
    manhattan: no visible global function definition for ‘abline’
    manhattan: no visible global function definition for ‘text’
    manhattan: no visible global function definition for ‘axis’
    manhattan: no visible global function definition for ‘dev.off’
    manhattan: no visible global function definition for ‘dev.copy2pdf’
    manhattan.reflect: no visible global function definition for
     ‘postscript’
    manhattan.reflect: no visible global function definition for ‘pdf’
    manhattan.reflect: no visible global function definition for ‘par’
    manhattan.reflect: no visible global function definition for ‘plot’
    manhattan.reflect: no visible global function definition for ‘points’
    manhattan.reflect: no visible global function definition for ‘abline’
    manhattan.reflect: no visible global function definition for ‘text’
    manhattan.reflect: no visible global function definition for ‘axis’
    manhattan.reflect: no visible global function definition for ‘dev.off’
    manhattan.reflect: no visible global function definition for
     ‘dev.copy2pdf’
    plot.cpg: no visible global function definition for ‘median’
    plot.cpg: no visible global function definition for ‘qchisq’
    plot.cpg: no visible global function definition for ‘p.adjust’
    plot.cpg: no visible global function definition for ‘postscript’
    plot.cpg: no visible global function definition for ‘pdf’
    plot.cpg: no visible global function definition for ‘qbeta’
    plot.cpg: no visible global function definition for ‘plot’
    plot.cpg: no visible global function definition for ‘legend’
    plot.cpg: no visible global function definition for ‘abline’
    plot.cpg: no visible global function definition for ‘points’
    plot.cpg: no visible global function definition for ‘qt’
    plot.cpg: no visible global function definition for ‘qqplot’
    plot.cpg: no visible global function definition for ‘dev.off’
    plot.cpg: no visible global function definition for ‘dev.copy2pdf’
    plot.cpg.perm: no visible global function definition for ‘postscript’
    plot.cpg.perm: no visible global function definition for ‘pdf’
    plot.cpg.perm: no visible global function definition for ‘median’
    plot.cpg.perm: no visible global function definition for ‘qchisq’
    plot.cpg.perm: no visible global function definition for ‘p.adjust’
    plot.cpg.perm: no visible global function definition for ‘plot’
    plot.cpg.perm: no visible global function definition for ‘legend’
    plot.cpg.perm: no visible global function definition for ‘points’
    plot.cpg.perm: no visible global function definition for ‘abline’
    plot.cpg.perm: no visible global function definition for ‘qt’
    plot.cpg.perm: no visible global function definition for ‘qqplot’
    plot.cpg.perm: no visible global function definition for ‘dev.off’
    plot.cpg.perm: no visible global function definition for ‘dev.copy2pdf’
    scatterplot: no visible global function definition for ‘postscript’
    scatterplot: no visible global function definition for ‘pdf’
    scatterplot: no visible global function definition for ‘boxplot’
    scatterplot: no visible global function definition for ‘plot’
    scatterplot: no visible global function definition for ‘abline’
    scatterplot: no visible global function definition for ‘points’
    scatterplot: no visible global function definition for ‘dev.off’
    scatterplot: no visible global function definition for ‘dev.copy2pdf’
    summary.cpg: no visible global function definition for ‘par’
    summary.cpg: no visible global function definition for ‘plot’
Flavor: r-devel-linux-x86_64-debian-gcc