CRAN Package Check Results for Package CrypticIBDcheck

Last updated on 2015-08-31 12:47:37.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3-1 5.82 55.38 61.19 NOTE
r-devel-linux-x86_64-debian-gcc 0.3-1 5.73 53.98 59.71 NOTE
r-devel-linux-x86_64-fedora-clang 0.3-1 124.32 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3-1 118.00 NOTE
r-devel-osx-x86_64-clang 0.3-1 106.51 NOTE
r-devel-windows-ix86+x86_64 0.3-1 26.00 118.00 144.00 NOTE
r-patched-linux-x86_64 0.3-1 5.79 57.55 63.34 NOTE
r-patched-solaris-sparc 0.3-1 786.50 NOTE
r-patched-solaris-x86 0.3-1 178.90 NOTE
r-release-linux-x86_64 0.3-1 6.21 60.28 66.48 NOTE
r-release-osx-x86_64-mavericks 0.3-1 NOTE
r-release-windows-ix86+x86_64 0.3-1 27.00 119.00 146.00 NOTE
r-oldrel-windows-ix86+x86_64 0.3-1 42.00 179.00 221.00 NOTE

Check Details

Version: 0.3-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘parallel’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Packages in Depends field not imported from:
     ‘car’ ‘ellipse’ ‘rJPSGCS’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3-1
Check: R code for possible problems
Result: NOTE
    GMLDfct: no visible global function definition for ‘clusterApplyLB’
    SNPgenmap: no visible binding for global variable ‘RutgersMapB36’
    SNPgenmap: no visible global function definition for ‘approxfun’
    countIBS: no visible global function definition for ‘is’
    doGeneDrops: no visible global function definition for ‘new’
    doGeneDrops: no visible global function definition for ‘write.pedfile’
    doGeneDrops: no visible global function definition for ‘GeneDrops’
    doGeneDrops: no visible global function definition for ‘read.pedfile’
    doGeneDrops: no visible global function definition for ‘rbinom’
    doTwinsim: no visible global function definition for ‘rbinom’
    flagAllPairs: no visible global function definition for ‘plot’
    flagAllPairs: no visible global function definition for ‘flush.console’
    flagAllPairs: no visible global function definition for ‘showLabels’
    flagAllPairs: no visible global function definition for ‘lines’
    flagPairs: no visible global function definition for ‘plot’
    flagPairs: no visible global function definition for ‘title’
    flagPairs: no visible global function definition for ‘lines’
    flagPairs: no visible global function definition for ‘var’
    flagPairs: no visible global function definition for ‘flush.console’
    flagPairs: no visible global function definition for ‘showLabels’
    gendrp: no visible global function definition for ‘clusterApply’
    get.ellipse: no visible global function definition for ‘sd’
    get.ellipse: no visible global function definition for ‘ellipse’
    get.ellipse: no visible global function definition for ‘cor’
    het.err: no visible global function definition for ‘rbinom’
    hom1.err: no visible global function definition for ‘rbinom’
    hom3.err: no visible global function definition for ‘rbinom’
    in.ellipse: no visible global function definition for ‘qchisq’
    new.IBD: no visible global function definition for ‘pnorm’
    parfile.fitLD: no visible global function definition for
     ‘write.pedfile’
    parfile.fitLD: no visible global function definition for
     ‘write.parfile’
    parfile.fitLD: no visible global function definition for ‘FitGMLD’
    parfile.noLD: no visible global function definition for ‘write.parfile’
    pausePlotting: no visible global function definition for
     ‘devAskNewPage’
    pausePlotting: no visible global function definition for ‘plot’
    plot.IBD: no visible global function definition for ‘quantile’
    snpfilter: no visible global function definition for ‘row.summary’
    snpinfos: no visible global function definition for ‘pnorm’
    Undefined global functions or variables:
     FitGMLD GeneDrops RutgersMapB36 approxfun clusterApply clusterApplyLB
     cor devAskNewPage ellipse flush.console is lines new plot pnorm
     qchisq quantile rbinom read.pedfile row.summary sd showLabels title
     var write.parfile write.pedfile
    Consider adding
     importFrom("grDevices", "devAskNewPage")
     importFrom("graphics", "lines", "plot", "title")
     importFrom("methods", "is", "new")
     importFrom("stats", "approxfun", "cor", "pnorm", "qchisq", "quantile",
     "rbinom", "sd", "var")
     importFrom("utils", "flush.console")
    to your NAMESPACE (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.3-1
Check: R code for possible problems
Result: NOTE
    GMLDfct: no visible global function definition for ‘clusterApplyLB’
    SNPgenmap: no visible binding for global variable ‘RutgersMapB36’
    doGeneDrops: no visible global function definition for ‘write.pedfile’
    doGeneDrops: no visible global function definition for ‘GeneDrops’
    doGeneDrops: no visible global function definition for ‘read.pedfile’
    flagAllPairs: no visible global function definition for ‘showLabels’
    flagPairs: no visible global function definition for ‘showLabels’
    gendrp: no visible global function definition for ‘clusterApply’
    get.ellipse: no visible global function definition for ‘ellipse’
    parfile.fitLD: no visible global function definition for
     ‘write.pedfile’
    parfile.fitLD: no visible global function definition for
     ‘write.parfile’
    parfile.fitLD: no visible global function definition for ‘FitGMLD’
    parfile.noLD: no visible global function definition for ‘write.parfile’
    snpfilter: no visible global function definition for ‘row.summary’
    Undefined global functions or variables:
     FitGMLD GeneDrops RutgersMapB36 clusterApply clusterApplyLB ellipse
     read.pedfile row.summary showLabels write.parfile write.pedfile
Flavor: r-devel-osx-x86_64-clang

Version: 0.3-1
Check: R code for possible problems
Result: NOTE
    GMLDfct: no visible global function definition for ‘clusterApplyLB’
    SNPgenmap: no visible binding for global variable ‘RutgersMapB36’
    doGeneDrops: no visible global function definition for ‘write.pedfile’
    doGeneDrops: no visible global function definition for ‘GeneDrops’
    doGeneDrops: no visible global function definition for ‘read.pedfile’
    flagAllPairs: no visible global function definition for ‘showLabels’
    flagPairs: no visible global function definition for ‘showLabels’
    gendrp: no visible global function definition for ‘clusterApply’
    get.ellipse: no visible global function definition for ‘ellipse’
    parfile.fitLD: no visible global function definition for
     ‘write.pedfile’
    parfile.fitLD: no visible global function definition for
     ‘write.parfile’
    parfile.fitLD: no visible global function definition for ‘FitGMLD’
    parfile.noLD: no visible global function definition for ‘write.parfile’
    snpfilter: no visible global function definition for ‘row.summary’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64