CRAN Package Check Results for Package EcoHydRology

Last updated on 2015-08-29 20:47:57.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.12 1.42 23.71 25.12 NOTE
r-devel-linux-x86_64-debian-gcc 0.4.12 1.37 23.74 25.11 NOTE
r-devel-linux-x86_64-fedora-clang 0.4.12 41.43 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4.12 39.29 NOTE
r-devel-osx-x86_64-clang 0.4.12 41.34 NOTE
r-devel-windows-ix86+x86_64 0.4.12 13.00 48.00 61.00 ERROR
r-patched-linux-x86_64 0.4.12 1.57 31.81 33.38 NOTE
r-patched-solaris-sparc 0.4.12 288.40 NOTE
r-patched-solaris-x86 0.4.12 60.70 NOTE
r-release-linux-x86_64 0.4.12 1.52 24.60 26.12 NOTE
r-release-osx-x86_64-mavericks 0.4.12 NOTE
r-release-windows-ix86+x86_64 0.4.12 10.00 99.00 109.00 NOTE
r-oldrel-windows-ix86+x86_64 0.4.12 12.00 110.00 122.00 NOTE

Check Details

Version: 0.4.12
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.4.12
Check: R code for possible problems
Result: NOTE
    BaseflowSeparation: no visible global function definition for
     ‘quantile’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/BaseflowSeparation.R:8)
    SWAT2005: no visible global function definition for ‘read.fortran’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/SWAT2005.R:16)
    alter_files: no visible global function definition for ‘read.fortran’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/alter_files.R:22)
    build_gsod_forcing_data: no visible global function definition for
     ‘na.omit’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/build_gsod_forcing_data.R:33)
    get_cfsr_latlon: no visible global function definition for
     ‘download.file’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/get_cfsr_latlon.R:10)
    get_cfsr_latlon: no visible global function definition for ‘read.csv’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/get_cfsr_latlon.R:11)
    get_gsod_stn: no visible global function definition for ‘read.csv’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/get_gsod_stn.R:22-23)
    get_gsod_stn: no visible global function definition for ‘download.file’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/get_gsod_stn.R:44)
    get_usgs_gage: no visible global function definition for ‘read.delim’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/get_usgs_gage.R:10)
    get_usgs_gage: no visible global function definition for ‘read.delim’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/get_usgs_gage.R:25)
    get_usgs_gage: no visible global function definition for ‘na.omit’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/get_usgs_gage.R:28)
    hydrograph: no visible global function definition for ‘par’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:15)
    hydrograph: no visible global function definition for ‘barplot’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:16-18)
    hydrograph: no visible global function definition for ‘na.omit’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:16-18)
    hydrograph: no visible global function definition for ‘axis’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:19)
    hydrograph: no visible global function definition for ‘axis’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:20-26)
    hydrograph: no visible global function definition for ‘na.omit’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:20-26)
    hydrograph: no visible global function definition for ‘mtext’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:28)
    hydrograph: no visible global function definition for ‘mtext’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:27-29)
    hydrograph: no visible global function definition for ‘par’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:30)
    hydrograph: no visible global function definition for ‘barplot’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:33-35)
    hydrograph: no visible global function definition for ‘na.omit’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:33-35)
    hydrograph: no visible global function definition for ‘par’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:36)
    hydrograph: no visible global function definition for ‘plot’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:39-42)
    hydrograph: no visible global function definition for ‘na.omit’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:39-42)
    hydrograph: no visible global function definition for ‘mtext’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:45)
    hydrograph: no visible global function definition for ‘mtext’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:47)
    hydrograph: no visible global function definition for ‘mtext’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:44-48)
    hydrograph: no visible global function definition for ‘lines’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:49-50)
    hydrograph: no visible global function definition for ‘lines’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:52-53)
    hydrograph: no visible global function definition for ‘lines’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:56-57)
    hydrograph: no visible global function definition for ‘axis’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:59-61)
    hydrograph: no visible global function definition for ‘axis’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/hydrograph.R:63)
    swat_objective_function: no visible global function definition for
     ‘read.fortran’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/swat_objective_function.R:11)
    swat_objective_function: no visible global function definition for
     ‘plot’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/swat_objective_function.R:25)
    swat_objective_function: no visible global function definition for
     ‘lines’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/swat_objective_function.R:26)
    swat_objective_function_rch: no visible global function definition for
     ‘runif’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/swat_objective_function_rch.R:5)
    swat_objective_function_rch: no visible global function definition for
     ‘read.fortran’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/swat_objective_function_rch.R:16)
    testSWAT2005 : runSWAT2005: no visible global function definition for
     ‘read.fortran’
     (/tmp/RtmpuvaKax/R.INSTALL2c5e621353ae/EcoHydRology/R/testSWAT2005.R:23-24)
    Undefined global functions or variables:
     axis barplot download.file lines mtext na.omit par plot quantile
     read.csv read.delim read.fortran runif
    Consider adding
     importFrom("graphics", "axis", "barplot", "lines", "mtext", "par",
     "plot")
     importFrom("stats", "na.omit", "quantile", "runif")
     importFrom("utils", "download.file", "read.csv", "read.delim",
     "read.fortran")
    to your NAMESPACE.
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.4.12
Check: R code for possible problems
Result: NOTE
    BaseflowSeparation: no visible global function definition for
     ‘quantile’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/BaseflowSeparation.R:8)
    SWAT2005: no visible global function definition for ‘read.fortran’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/SWAT2005.R:16)
    alter_files: no visible global function definition for ‘read.fortran’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/alter_files.R:22)
    build_gsod_forcing_data: no visible global function definition for
     ‘na.omit’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/build_gsod_forcing_data.R:33)
    get_cfsr_latlon: no visible global function definition for
     ‘download.file’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/get_cfsr_latlon.R:10)
    get_cfsr_latlon: no visible global function definition for ‘read.csv’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/get_cfsr_latlon.R:11)
    get_gsod_stn: no visible global function definition for ‘read.csv’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/get_gsod_stn.R:22-23)
    get_gsod_stn: no visible global function definition for ‘download.file’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/get_gsod_stn.R:44)
    get_usgs_gage: no visible global function definition for ‘read.delim’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/get_usgs_gage.R:10)
    get_usgs_gage: no visible global function definition for ‘read.delim’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/get_usgs_gage.R:25)
    get_usgs_gage: no visible global function definition for ‘na.omit’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/get_usgs_gage.R:28)
    hydrograph: no visible global function definition for ‘par’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:15)
    hydrograph: no visible global function definition for ‘barplot’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:16-18)
    hydrograph: no visible global function definition for ‘na.omit’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:16-18)
    hydrograph: no visible global function definition for ‘axis’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:19)
    hydrograph: no visible global function definition for ‘axis’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:20-26)
    hydrograph: no visible global function definition for ‘na.omit’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:20-26)
    hydrograph: no visible global function definition for ‘mtext’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:28)
    hydrograph: no visible global function definition for ‘mtext’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:27-29)
    hydrograph: no visible global function definition for ‘par’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:30)
    hydrograph: no visible global function definition for ‘barplot’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:33-35)
    hydrograph: no visible global function definition for ‘na.omit’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:33-35)
    hydrograph: no visible global function definition for ‘par’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:36)
    hydrograph: no visible global function definition for ‘plot’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:39-42)
    hydrograph: no visible global function definition for ‘na.omit’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:39-42)
    hydrograph: no visible global function definition for ‘mtext’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:45)
    hydrograph: no visible global function definition for ‘mtext’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:47)
    hydrograph: no visible global function definition for ‘mtext’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:44-48)
    hydrograph: no visible global function definition for ‘lines’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:49-50)
    hydrograph: no visible global function definition for ‘lines’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:52-53)
    hydrograph: no visible global function definition for ‘lines’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:56-57)
    hydrograph: no visible global function definition for ‘axis’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:59-61)
    hydrograph: no visible global function definition for ‘axis’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/hydrograph.R:63)
    swat_objective_function: no visible global function definition for
     ‘read.fortran’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/swat_objective_function.R:11)
    swat_objective_function: no visible global function definition for
     ‘plot’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/swat_objective_function.R:25)
    swat_objective_function: no visible global function definition for
     ‘lines’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/swat_objective_function.R:26)
    swat_objective_function_rch: no visible global function definition for
     ‘runif’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/swat_objective_function_rch.R:5)
    swat_objective_function_rch: no visible global function definition for
     ‘read.fortran’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/swat_objective_function_rch.R:16)
    testSWAT2005 : runSWAT2005: no visible global function definition for
     ‘read.fortran’
     (/tmp/Rtmp3UDgTa/R.INSTALL20ec4bbfdacf/EcoHydRology/R/testSWAT2005.R:23-24)
    Undefined global functions or variables:
     axis barplot download.file lines mtext na.omit par plot quantile
     read.csv read.delim read.fortran runif
    Consider adding
     importFrom("graphics", "axis", "barplot", "lines", "mtext", "par",
     "plot")
     importFrom("stats", "na.omit", "quantile", "runif")
     importFrom("utils", "download.file", "read.csv", "read.delim",
     "read.fortran")
    to your NAMESPACE.
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.4.12
Check: R code for possible problems
Result: NOTE
    BaseflowSeparation: no visible global function definition for
     ‘quantile’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/BaseflowSeparation.R:8)
    SWAT2005: no visible global function definition for ‘read.fortran’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/SWAT2005.R:16)
    alter_files: no visible global function definition for ‘read.fortran’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/alter_files.R:22)
    build_gsod_forcing_data: no visible global function definition for
     ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/build_gsod_forcing_data.R:33)
    get_cfsr_latlon: no visible global function definition for
     ‘download.file’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/get_cfsr_latlon.R:10)
    get_cfsr_latlon: no visible global function definition for ‘read.csv’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/get_cfsr_latlon.R:11)
    get_gsod_stn: no visible global function definition for ‘read.csv’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/get_gsod_stn.R:22-23)
    get_gsod_stn: no visible global function definition for ‘download.file’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/get_gsod_stn.R:44)
    get_usgs_gage: no visible global function definition for ‘read.delim’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/get_usgs_gage.R:10)
    get_usgs_gage: no visible global function definition for ‘read.delim’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/get_usgs_gage.R:25)
    get_usgs_gage: no visible global function definition for ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/get_usgs_gage.R:28)
    hydrograph: no visible global function definition for ‘par’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:15)
    hydrograph: no visible global function definition for ‘barplot’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:16-18)
    hydrograph: no visible global function definition for ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:16-18)
    hydrograph: no visible global function definition for ‘axis’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:19)
    hydrograph: no visible global function definition for ‘axis’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:20-26)
    hydrograph: no visible global function definition for ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:20-26)
    hydrograph: no visible global function definition for ‘mtext’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:28)
    hydrograph: no visible global function definition for ‘mtext’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:27-29)
    hydrograph: no visible global function definition for ‘par’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:30)
    hydrograph: no visible global function definition for ‘barplot’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:33-35)
    hydrograph: no visible global function definition for ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:33-35)
    hydrograph: no visible global function definition for ‘par’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:36)
    hydrograph: no visible global function definition for ‘plot’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:39-42)
    hydrograph: no visible global function definition for ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:39-42)
    hydrograph: no visible global function definition for ‘mtext’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:45)
    hydrograph: no visible global function definition for ‘mtext’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:47)
    hydrograph: no visible global function definition for ‘mtext’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:44-48)
    hydrograph: no visible global function definition for ‘lines’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:49-50)
    hydrograph: no visible global function definition for ‘lines’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:52-53)
    hydrograph: no visible global function definition for ‘lines’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:56-57)
    hydrograph: no visible global function definition for ‘axis’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:59-61)
    hydrograph: no visible global function definition for ‘axis’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/hydrograph.R:63)
    swat_objective_function: no visible global function definition for
     ‘read.fortran’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/swat_objective_function.R:11)
    swat_objective_function: no visible global function definition for
     ‘plot’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/swat_objective_function.R:25)
    swat_objective_function: no visible global function definition for
     ‘lines’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/swat_objective_function.R:26)
    swat_objective_function_rch: no visible global function definition for
     ‘runif’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/swat_objective_function_rch.R:5)
    swat_objective_function_rch: no visible global function definition for
     ‘read.fortran’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/swat_objective_function_rch.R:16)
    testSWAT2005 : runSWAT2005: no visible global function definition for
     ‘read.fortran’
     (/data/gannet/ripley/R/packages/tests-clang/EcoHydRology/R/testSWAT2005.R:23-24)
    Undefined global functions or variables:
     axis barplot download.file lines mtext na.omit par plot quantile
     read.csv read.delim read.fortran runif
    Consider adding
     importFrom("graphics", "axis", "barplot", "lines", "mtext", "par",
     "plot")
     importFrom("stats", "na.omit", "quantile", "runif")
     importFrom("utils", "download.file", "read.csv", "read.delim",
     "read.fortran")
    to your NAMESPACE.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.4.12
Check: data for non-ASCII characters
Result: NOTE
     Note: found 8 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4.12
Check: R code for possible problems
Result: NOTE
    BaseflowSeparation: no visible global function definition for
     ‘quantile’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/BaseflowSeparation.R:8)
    SWAT2005: no visible global function definition for ‘read.fortran’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/SWAT2005.R:16)
    alter_files: no visible global function definition for ‘read.fortran’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/alter_files.R:22)
    build_gsod_forcing_data: no visible global function definition for
     ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/build_gsod_forcing_data.R:33)
    get_cfsr_latlon: no visible global function definition for
     ‘download.file’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/get_cfsr_latlon.R:10)
    get_cfsr_latlon: no visible global function definition for ‘read.csv’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/get_cfsr_latlon.R:11)
    get_gsod_stn: no visible global function definition for ‘read.csv’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/get_gsod_stn.R:22-23)
    get_gsod_stn: no visible global function definition for ‘download.file’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/get_gsod_stn.R:44)
    get_usgs_gage: no visible global function definition for ‘read.delim’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/get_usgs_gage.R:10)
    get_usgs_gage: no visible global function definition for ‘read.delim’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/get_usgs_gage.R:25)
    get_usgs_gage: no visible global function definition for ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/get_usgs_gage.R:28)
    hydrograph: no visible global function definition for ‘par’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:15)
    hydrograph: no visible global function definition for ‘barplot’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:16-18)
    hydrograph: no visible global function definition for ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:16-18)
    hydrograph: no visible global function definition for ‘axis’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:19)
    hydrograph: no visible global function definition for ‘axis’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:20-26)
    hydrograph: no visible global function definition for ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:20-26)
    hydrograph: no visible global function definition for ‘mtext’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:28)
    hydrograph: no visible global function definition for ‘mtext’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:27-29)
    hydrograph: no visible global function definition for ‘par’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:30)
    hydrograph: no visible global function definition for ‘barplot’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:33-35)
    hydrograph: no visible global function definition for ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:33-35)
    hydrograph: no visible global function definition for ‘par’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:36)
    hydrograph: no visible global function definition for ‘plot’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:39-42)
    hydrograph: no visible global function definition for ‘na.omit’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:39-42)
    hydrograph: no visible global function definition for ‘mtext’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:45)
    hydrograph: no visible global function definition for ‘mtext’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:47)
    hydrograph: no visible global function definition for ‘mtext’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:44-48)
    hydrograph: no visible global function definition for ‘lines’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:49-50)
    hydrograph: no visible global function definition for ‘lines’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:52-53)
    hydrograph: no visible global function definition for ‘lines’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:56-57)
    hydrograph: no visible global function definition for ‘axis’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:59-61)
    hydrograph: no visible global function definition for ‘axis’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/hydrograph.R:63)
    swat_objective_function: no visible global function definition for
     ‘read.fortran’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/swat_objective_function.R:11)
    swat_objective_function: no visible global function definition for
     ‘plot’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/swat_objective_function.R:25)
    swat_objective_function: no visible global function definition for
     ‘lines’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/swat_objective_function.R:26)
    swat_objective_function_rch: no visible global function definition for
     ‘runif’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/swat_objective_function_rch.R:5)
    swat_objective_function_rch: no visible global function definition for
     ‘read.fortran’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/swat_objective_function_rch.R:16)
    testSWAT2005 : runSWAT2005: no visible global function definition for
     ‘read.fortran’
     (/data/gannet/ripley/R/packages/tests-devel/EcoHydRology/R/testSWAT2005.R:23-24)
    Undefined global functions or variables:
     axis barplot download.file lines mtext na.omit par plot quantile
     read.csv read.delim read.fortran runif
    Consider adding
     importFrom("graphics", "axis", "barplot", "lines", "mtext", "par",
     "plot")
     importFrom("stats", "na.omit", "quantile", "runif")
     importFrom("utils", "download.file", "read.csv", "read.delim",
     "read.fortran")
    to your NAMESPACE.
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.4.12
Check: R code for possible problems
Result: NOTE
    BaseflowSeparation: no visible global function definition for
     'quantile'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/BaseflowSeparation.R:8)
    SWAT2005: no visible global function definition for 'read.fortran'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/SWAT2005.R:16)
    alter_files: no visible global function definition for 'read.fortran'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/alter_files.R:22)
    build_gsod_forcing_data: no visible global function definition for
     'na.omit'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/build_gsod_forcing_data.R:33)
    get_cfsr_latlon: no visible global function definition for
     'download.file'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/get_cfsr_latlon.R:10)
    get_cfsr_latlon: no visible global function definition for 'read.csv'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/get_cfsr_latlon.R:11)
    get_gsod_stn: no visible global function definition for 'read.csv'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/get_gsod_stn.R:22-23)
    get_gsod_stn: no visible global function definition for 'download.file'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/get_gsod_stn.R:44)
    get_usgs_gage: no visible global function definition for 'read.delim'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/get_usgs_gage.R:10)
    get_usgs_gage: no visible global function definition for 'read.delim'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/get_usgs_gage.R:25)
    get_usgs_gage: no visible global function definition for 'na.omit'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/get_usgs_gage.R:28)
    hydrograph: no visible global function definition for 'par'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:15)
    hydrograph: no visible global function definition for 'barplot'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:16-18)
    hydrograph: no visible global function definition for 'na.omit'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:16-18)
    hydrograph: no visible global function definition for 'axis'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:19)
    hydrograph: no visible global function definition for 'axis'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:20-26)
    hydrograph: no visible global function definition for 'na.omit'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:20-26)
    hydrograph: no visible global function definition for 'mtext'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:28)
    hydrograph: no visible global function definition for 'mtext'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:27-29)
    hydrograph: no visible global function definition for 'par'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:30)
    hydrograph: no visible global function definition for 'barplot'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:33-35)
    hydrograph: no visible global function definition for 'na.omit'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:33-35)
    hydrograph: no visible global function definition for 'par'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:36)
    hydrograph: no visible global function definition for 'plot'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:39-42)
    hydrograph: no visible global function definition for 'na.omit'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:39-42)
    hydrograph: no visible global function definition for 'mtext'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:45)
    hydrograph: no visible global function definition for 'mtext'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:47)
    hydrograph: no visible global function definition for 'mtext'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:44-48)
    hydrograph: no visible global function definition for 'lines'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:49-50)
    hydrograph: no visible global function definition for 'lines'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:52-53)
    hydrograph: no visible global function definition for 'lines'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:56-57)
    hydrograph: no visible global function definition for 'axis'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:59-61)
    hydrograph: no visible global function definition for 'axis'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/hydrograph.R:63)
    swat_objective_function: no visible global function definition for
     'read.fortran'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/swat_objective_function.R:11)
    swat_objective_function: no visible global function definition for
     'plot'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/swat_objective_function.R:25)
    swat_objective_function: no visible global function definition for
     'lines'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/swat_objective_function.R:26)
    swat_objective_function_rch: no visible global function definition for
     'runif'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/swat_objective_function_rch.R:5)
    swat_objective_function_rch: no visible global function definition for
     'read.fortran'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/swat_objective_function_rch.R:16)
    testSWAT2005 : runSWAT2005: no visible global function definition for
     'read.fortran'
     (D:/temp/RtmpwPm5Lg/R.INSTALL148fc76f234cb/EcoHydRology/R/testSWAT2005.R:23-24)
    Undefined global functions or variables:
     axis barplot download.file lines mtext na.omit par plot quantile
     read.csv read.delim read.fortran runif
    Consider adding
     importFrom("graphics", "axis", "barplot", "lines", "mtext", "par",
     "plot")
     importFrom("stats", "na.omit", "quantile", "runif")
     importFrom("utils", "download.file", "read.csv", "read.delim",
     "read.fortran")
    to your NAMESPACE.
Flavor: r-devel-windows-ix86+x86_64

Version: 0.4.12
Check: examples
Result: ERROR
    Running examples in 'EcoHydRology-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: get_usgs_gage
    > ### Title: A function to grab daily stream flow measurements from the USGS
    > ### waterdata.usgs.gov server.
    > ### Aliases: get_usgs_gage
    >
    > ### ** Examples
    >
    >
    > flowgage_id="04216500"
    > flowgage=get_usgs_gage(flowgage_id)
    Warning in file(con, "r") :
     cannot open URL 'http://waterdata.usgs.gov/nwis/inventory?search_site_no=04216500&search_site_no_match_type=exact&sort_key=site_no&group_key=NONE&format=sitefile_output&sitefile_output_format=rdb&column_name=station_nm&column_name=site_tp_cd&column_name=dec_lat_va&column_name=dec_long_va&column_name=alt_va&column_name=drain_area_va&column_name=contrib_drain_area_va&column_name=rt_bol&list_of_search_criteria=search_site_no': HTTP status was '503 Service Unavailable'
    Error in file(con, "r") : cannot open the connection
    Calls: get_usgs_gage -> readLines -> file
    Execution halted
Flavor: r-devel-windows-ix86+x86_64