CRAN Package Check Results for Package EnQuireR

Last updated on 2016-07-01 09:49:55.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 0.10 6.39 63.73 70.11 NOTE
r-devel-linux-x86_64-fedora-clang 0.10 118.85 NOTE
r-devel-linux-x86_64-fedora-gcc 0.10 108.55 NOTE
r-devel-osx-x86_64-clang 0.10 92.64 NOTE
r-devel-windows-ix86+x86_64 0.10 44.00 92.00 136.00 NOTE
r-patched-linux-x86_64 0.10 7.38 61.99 69.37 NOTE
r-patched-solaris-sparc 0.10 679.90 NOTE
r-patched-solaris-x86 0.10 153.40 NOTE
r-release-linux-x86_64 0.10 6.45 58.64 65.09 NOTE
r-release-osx-x86_64-mavericks 0.10 WARN
r-release-windows-ix86+x86_64 0.10 38.00 91.00 129.00 NOTE
r-oldrel-windows-ix86+x86_64 0.10 33.00 96.00 129.00 NOTE

Check Details

Version: 0.10
Check: installed package size
Result: NOTE
     installed size is 6.2Mb
     sub-directories of 1Mb or more:
     Sweave 6.0Mb
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.10
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.10
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘desktop.ini’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.10
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘FactoMineR’ ‘MASS’ ‘Rcmdr’ ‘SensoMineR’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.10
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘barplot_function’
    Found the platform-specific device:
     ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    ENMCA: no visible global function definition for ‘dev.list’
    ENMCA : fn: no visible global function definition for ‘dev.new’
    ENMCA : fn: no visible global function definition for ‘assignCluster’
    ENMCA : fn: no visible global function definition for ‘dev.cur’
    ENMCA : fn: no visible global function definition for ‘catdes’
    ENMCA : fn: no visible global function definition for ‘plot.MCA’
    ENMCA : fn: no visible global function definition for ‘legend’
    ENMCA : Sweave_f: no visible global function definition for ‘Sweave’
    ENMCA : Sweave_f: no visible global function definition for
     ‘RweaveLatex’
    ENbarplot: no visible global function definition for ‘Sweave’
    ENbarplot: no visible global function definition for ‘RweaveLatex’
    ENdensity: no visible global function definition for ‘kde2d’
    ENdensity: no visible global function definition for ‘contour’
    ENdensity: no visible global function definition for ‘title’
    ENellipse : ellipse: no visible global function definition for ‘qchisq’
    ENellipse: no visible global function definition for ‘var’
    ENellipse: no visible global function definition for ‘plot’
    ENellipse: no visible global function definition for ‘title’
    ENellipse: no visible global function definition for ‘abline’
    ENellipse: no visible global function definition for ‘text’
    ENellipse: no visible global function definition for ‘legend’
    ENellipse: no visible global function definition for ‘points’
    ENellipse: no visible global function definition for ‘lines’
    ENlisib: no visible global function definition for ‘sd’
    ENlisib: no visible global function definition for ‘plot.MCA’
    GRmarking: no visible global function definition for ‘dev.new’
    GRmarking: no visible global function definition for ‘par’
    GRmarking: no visible global function definition for ‘barplot’
    GRmarking: no visible global function definition for ‘text’
    GRmarking: no visible global function definition for ‘mtext’
    MCA2: no visible global function definition for ‘tab.disjonctif’
    MCA2: no visible global function definition for ‘complete.cases’
    MCA2: no visible global function definition for ‘PCA’
    MCA2: no visible global function definition for ‘CA’
    MCA2: no visible global function definition for ‘aov’
    MCA2: no visible global function definition for ‘cor’
    MCA2: no visible global function definition for ‘plot.MCA’
    XvsYbarplot: no visible global function definition for ‘par’
    XvsYbarplot: no visible global function definition for ‘hsv’
    XvsYbarplot: no visible global function definition for ‘plot.new’
    XvsYbarplot: no visible global function definition for ‘plot.window’
    XvsYbarplot : xyrect: no visible global function definition for ‘rect’
    XvsYbarplot: no visible global function definition for ‘axis’
    XvsYbarplot: no visible global function definition for ‘xinch’
    XvsYbarplot: no visible global function definition for ‘yinch’
    XvsYbarplot: no visible global function definition for ‘title’
    barplot_function: no visible global function definition for ‘hsv’
    barplot_function: no visible global function definition for ‘par’
    barplot_function: no visible global function definition for ‘x11’
    barplot_function: no visible global function definition for ‘barplot’
    barplot_function: no visible global function definition for ‘text’
    barplot_function: no visible global function definition for ‘mtext’
    barplot_sweave : set.X: no visible binding for global variable ‘X’
    barplot_sweave : Sweave_f: no visible global function definition for
     ‘Sweave’
    barplot_sweave : Sweave_f: no visible global function definition for
     ‘RweaveLatex’
    barplotclustervsvar: no visible global function definition for ‘par’
    barplotclustervsvar: no visible global function definition for
     ‘col2rgb’
    barplotclustervsvar: no visible global function definition for ‘grey’
    barplotclustervsvar: no visible global function definition for
     ‘rgb2hsv’
    barplotclustervsvar: no visible global function definition for ‘hsv’
    barplotclustervsvar: no visible global function definition for
     ‘plot.new’
    barplotclustervsvar: no visible global function definition for
     ‘plot.window’
    barplotclustervsvar : xyrect: no visible global function definition for
     ‘rect’
    barplotclustervsvar: no visible global function definition for ‘axis’
    barplotclustervsvar: no visible global function definition for ‘xinch’
    barplotclustervsvar: no visible global function definition for ‘yinch’
    barplotclustervsvar: no visible global function definition for ‘title’
    barplotgroupes: no visible global function definition for ‘par’
    barplotgroupes: no visible global function definition for ‘grey.colors’
    barplotgroupes: no visible global function definition for ‘plot.new’
    barplotgroupes: no visible global function definition for ‘plot.window’
    barplotgroupes : xyrect: no visible global function definition for
     ‘rect’
    barplotgroupes: no visible global function definition for ‘axis’
    barplotgroupes: no visible global function definition for ‘title’
    catdes2: no visible global function definition for ‘xtabs’
    catdes2: no visible global function definition for ‘chisq.test’
    catdes2: no visible global function definition for ‘phyper’
    catdes2: no visible global function definition for ‘qnorm’
    catdes2: no visible binding for global variable ‘sd’
    catdes2: no visible global function definition for ‘sd’
    chisq.function: no visible global function definition for ‘as.formula’
    chisq.function: no visible global function definition for ‘xtabs’
    chisq.function: no visible global function definition for ‘chisq.test’
    chisq.function: no visible global function definition for ‘coltable’
    chisq.function: no visible global function definition for ‘par’
    chisq.function: no visible global function definition for ‘title’
    chisq.function: no visible global function definition for ‘mtext’
    chisq.function: no visible global function definition for ‘phyper’
    chisq.function: no visible global function definition for ‘qnorm’
    chisq.sweave : Sweave_f: no visible global function definition for
     ‘Sweave’
    chisq.sweave : Sweave_f: no visible global function definition for
     ‘RweaveLatex’
    col.barplot: no visible global function definition for ‘par’
    col.barplot: no visible global function definition for ‘hsv’
    col.barplot: no visible global function definition for ‘plot.new’
    col.barplot: no visible global function definition for ‘plot.window’
    col.barplot : xyrect: no visible global function definition for ‘rect’
    col.barplot: no visible global function definition for ‘axis’
    col.barplot: no visible global function definition for ‘legend’
    col.barplot: no visible global function definition for ‘xinch’
    col.barplot: no visible global function definition for ‘yinch’
    col.barplot: no visible global function definition for ‘title’
    cuttree.graph: no visible global function definition for ‘plot’
    cuttree.graph: no visible global function definition for ‘locator’
    cuttree.graph: no visible global function definition for ‘rect.hclust’
    cuttree.graph: no visible global function definition for ‘cutree’
    cuttree.graph: no visible global function definition for ‘as.hclust’
    legend2: no visible global function definition for ‘par’
    legend2: no visible global function definition for ‘as.graphicsAnnot’
    legend2: no visible global function definition for ‘xy.coords’
    legend2 : rect2: no visible global function definition for ‘rect’
    legend2 : segments2: no visible global function definition for
     ‘segments’
    legend2 : points2: no visible global function definition for ‘points’
    legend2 : text2: no visible global function definition for ‘text’
    legend2: no visible global function definition for ‘strwidth’
    legend2: no visible global function definition for ‘xinch’
    legend2: no visible global function definition for ‘yinch’
    legend2: no visible global function definition for ‘strheight’
    p_inertia: no visible global function definition for ‘MCA’
    tab_chi2: no visible global function definition for ‘chisq.test’
    tab_chi2: no visible global function definition for ‘coltable’
    tab_chi2: no visible global function definition for ‘par’
    tab_chi2: no visible global function definition for ‘title’
    Undefined global functions or variables:
     CA MCA PCA RweaveLatex Sweave X abline aov as.formula
     as.graphicsAnnot as.hclust assignCluster axis barplot catdes
     chisq.test col2rgb coltable complete.cases contour cor cutree dev.cur
     dev.list dev.new grey grey.colors hsv kde2d legend lines locator
     mtext par phyper plot plot.MCA plot.new plot.window points qchisq
     qnorm rect rect.hclust rgb2hsv sd segments strheight strwidth
     tab.disjonctif text title var x11 xinch xtabs xy.coords yinch
    Consider adding
     importFrom("grDevices", "as.graphicsAnnot", "col2rgb", "dev.cur",
     "dev.list", "dev.new", "grey", "grey.colors", "hsv",
     "rgb2hsv", "x11", "xy.coords")
     importFrom("graphics", "abline", "axis", "barplot", "contour",
     "legend", "lines", "locator", "mtext", "par", "plot",
     "plot.new", "plot.window", "points", "rect", "segments",
     "strheight", "strwidth", "text", "title", "xinch", "yinch")
     importFrom("stats", "aov", "as.formula", "as.hclust", "chisq.test",
     "complete.cases", "cor", "cutree", "phyper", "qchisq",
     "qnorm", "rect.hclust", "sd", "var", "xtabs")
     importFrom("utils", "RweaveLatex", "Sweave")
    to your NAMESPACE file.
    
    Found the following assignments to the global environment:
    File ‘EnQuireR/R/ENMCA.R’:
     assign("hclus", tab2, envir = .GlobalEnv)
     assign("num.var", num.var, envir = .GlobalEnv)
     assign("catdes", aa, envir = .GlobalEnv)
     assign("res.acm", bb, envir = .GlobalEnv)
     assign("dataset", cc, envir = .GlobalEnv)
     assign("dataset2", dd, envir = .GlobalEnv)
     assign("res.acm.tot", res$MCA, envir = .GlobalEnv)
     assign("res.signif", res.signif$resum, envir = .GlobalEnv)
    File ‘EnQuireR/R/ENbarplot.R’:
     assign("X", X, envir = .GlobalEnv)
     assign("dataset", dataset, envir = .GlobalEnv)
    File ‘EnQuireR/R/chisq.desc.R’:
     assign("Y", Y, envir = .GlobalEnv)
     assign("X", X, envir = .GlobalEnv)
    File ‘EnQuireR/R/chisq.sweave.R’:
     assign("language", language, envir = .GlobalEnv)
     assign("varY", var, envir = .GlobalEnv)
     assign("varX", desc, envir = .GlobalEnv)
     assign("dataset", dataset, envir = .GlobalEnv)
     assign("X", c, envir = .GlobalEnv)
     assign("Y", d, envir = .GlobalEnv)
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.10
Check: Rd line widths
Result: NOTE
    Rd file 'ENMCA.Rd':
     \usage lines wider than 90 characters:
     ENMCA(dataset,ind.sup = NULL, quanti.sup = NULL, quali.sup = NULL, axes = c(1, 2), row.w = NULL,level.ventil = 0,signif=FALSE,proba=0.0 ... [TRUNCATED]
    
    Rd file 'ENellipse.Rd':
     \usage lines wider than 90 characters:
     ENellipse(matP, cluster, resampling="population", iter=500, alpha = 0.05, coord = c(1, 2), eig, cex = 1, color = NULL)
     \examples lines wider than 100 characters:
     ENellipse(matP=x, cluster=b, resampling="population", iter=500, alpha = 0.05, coord = c(1, 2), eig=res.enmca$MCA$eig, cex = 1, color = ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.10
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘barplot_function’
    Found the platform-specific device:
     ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    ENMCA: no visible global function definition for ‘dev.list’
    ENMCA : fn: no visible global function definition for ‘dev.new’
    ENMCA : fn: no visible global function definition for ‘assignCluster’
    ENMCA : fn: no visible global function definition for ‘dev.cur’
    ENMCA : fn: no visible global function definition for ‘catdes’
    ENMCA : fn: no visible global function definition for ‘plot.MCA’
    ENMCA : fn: no visible global function definition for ‘legend’
    ENMCA : Sweave_f: no visible global function definition for ‘Sweave’
    ENMCA : Sweave_f: no visible global function definition for
     ‘RweaveLatex’
    ENbarplot: no visible global function definition for ‘Sweave’
    ENbarplot: no visible global function definition for ‘RweaveLatex’
    ENdensity: no visible global function definition for ‘kde2d’
    ENdensity: no visible global function definition for ‘contour’
    ENdensity: no visible global function definition for ‘title’
    ENellipse : ellipse: no visible global function definition for ‘qchisq’
    ENellipse: no visible global function definition for ‘var’
    ENellipse: no visible global function definition for ‘plot’
    ENellipse: no visible global function definition for ‘title’
    ENellipse: no visible global function definition for ‘abline’
    ENellipse: no visible global function definition for ‘text’
    ENellipse: no visible global function definition for ‘legend’
    ENellipse: no visible global function definition for ‘points’
    ENellipse: no visible global function definition for ‘lines’
    ENlisib: no visible global function definition for ‘sd’
    ENlisib: no visible global function definition for ‘plot.MCA’
    GRmarking: no visible global function definition for ‘dev.new’
    GRmarking: no visible global function definition for ‘par’
    GRmarking: no visible global function definition for ‘barplot’
    GRmarking: no visible global function definition for ‘text’
    GRmarking: no visible global function definition for ‘mtext’
    MCA2: no visible global function definition for ‘tab.disjonctif’
    MCA2: no visible global function definition for ‘complete.cases’
    MCA2: no visible global function definition for ‘PCA’
    MCA2: no visible global function definition for ‘CA’
    MCA2: no visible global function definition for ‘aov’
    MCA2: no visible global function definition for ‘cor’
    MCA2: no visible global function definition for ‘plot.MCA’
    XvsYbarplot: no visible global function definition for ‘par’
    XvsYbarplot: no visible global function definition for ‘hsv’
    XvsYbarplot: no visible global function definition for ‘plot.new’
    XvsYbarplot: no visible global function definition for ‘plot.window’
    XvsYbarplot : xyrect: no visible global function definition for ‘rect’
    XvsYbarplot: no visible global function definition for ‘axis’
    XvsYbarplot: no visible global function definition for ‘xinch’
    XvsYbarplot: no visible global function definition for ‘yinch’
    XvsYbarplot: no visible global function definition for ‘title’
    barplot_function: no visible global function definition for ‘hsv’
    barplot_function: no visible global function definition for ‘par’
    barplot_function: no visible global function definition for ‘x11’
    barplot_function: no visible global function definition for ‘barplot’
    barplot_function: no visible global function definition for ‘text’
    barplot_function: no visible global function definition for ‘mtext’
    barplot_sweave : set.X: no visible binding for global variable ‘X’
    barplot_sweave : Sweave_f: no visible global function definition for
     ‘Sweave’
    barplot_sweave : Sweave_f: no visible global function definition for
     ‘RweaveLatex’
    barplotclustervsvar: no visible global function definition for ‘par’
    barplotclustervsvar: no visible global function definition for
     ‘col2rgb’
    barplotclustervsvar: no visible global function definition for ‘grey’
    barplotclustervsvar: no visible global function definition for
     ‘rgb2hsv’
    barplotclustervsvar: no visible global function definition for ‘hsv’
    barplotclustervsvar: no visible global function definition for
     ‘plot.new’
    barplotclustervsvar: no visible global function definition for
     ‘plot.window’
    barplotclustervsvar : xyrect: no visible global function definition for
     ‘rect’
    barplotclustervsvar: no visible global function definition for ‘axis’
    barplotclustervsvar: no visible global function definition for ‘xinch’
    barplotclustervsvar: no visible global function definition for ‘yinch’
    barplotclustervsvar: no visible global function definition for ‘title’
    barplotgroupes: no visible global function definition for ‘par’
    barplotgroupes: no visible global function definition for ‘grey.colors’
    barplotgroupes: no visible global function definition for ‘plot.new’
    barplotgroupes: no visible global function definition for ‘plot.window’
    barplotgroupes : xyrect: no visible global function definition for
     ‘rect’
    barplotgroupes: no visible global function definition for ‘axis’
    barplotgroupes: no visible global function definition for ‘title’
    catdes2: no visible global function definition for ‘xtabs’
    catdes2: no visible global function definition for ‘chisq.test’
    catdes2: no visible global function definition for ‘phyper’
    catdes2: no visible global function definition for ‘qnorm’
    catdes2: no visible binding for global variable ‘sd’
    catdes2: no visible global function definition for ‘sd’
    chisq.function: no visible global function definition for ‘as.formula’
    chisq.function: no visible global function definition for ‘xtabs’
    chisq.function: no visible global function definition for ‘chisq.test’
    chisq.function: no visible global function definition for ‘coltable’
    chisq.function: no visible global function definition for ‘par’
    chisq.function: no visible global function definition for ‘title’
    chisq.function: no visible global function definition for ‘mtext’
    chisq.function: no visible global function definition for ‘phyper’
    chisq.function: no visible global function definition for ‘qnorm’
    chisq.sweave : Sweave_f: no visible global function definition for
     ‘Sweave’
    chisq.sweave : Sweave_f: no visible global function definition for
     ‘RweaveLatex’
    col.barplot: no visible global function definition for ‘par’
    col.barplot: no visible global function definition for ‘hsv’
    col.barplot: no visible global function definition for ‘plot.new’
    col.barplot: no visible global function definition for ‘plot.window’
    col.barplot : xyrect: no visible global function definition for ‘rect’
    col.barplot: no visible global function definition for ‘axis’
    col.barplot: no visible global function definition for ‘legend’
    col.barplot: no visible global function definition for ‘xinch’
    col.barplot: no visible global function definition for ‘yinch’
    col.barplot: no visible global function definition for ‘title’
    cuttree.graph: no visible global function definition for ‘plot’
    cuttree.graph: no visible global function definition for ‘locator’
    cuttree.graph: no visible global function definition for ‘rect.hclust’
    cuttree.graph: no visible global function definition for ‘cutree’
    cuttree.graph: no visible global function definition for ‘as.hclust’
    legend2: no visible global function definition for ‘par’
    legend2: no visible global function definition for ‘as.graphicsAnnot’
    legend2: no visible global function definition for ‘xy.coords’
    legend2 : rect2: no visible global function definition for ‘rect’
    legend2 : segments2: no visible global function definition for
     ‘segments’
    legend2 : points2: no visible global function definition for ‘points’
    legend2 : text2: no visible global function definition for ‘text’
    legend2: no visible global function definition for ‘strwidth’
    legend2: no visible global function definition for ‘xinch’
    legend2: no visible global function definition for ‘yinch’
    legend2: no visible global function definition for ‘strheight’
    p_inertia: no visible global function definition for ‘MCA’
    tab_chi2: no visible global function definition for ‘chisq.test’
    tab_chi2: no visible global function definition for ‘coltable’
    tab_chi2: no visible global function definition for ‘par’
    tab_chi2: no visible global function definition for ‘title’
    Undefined global functions or variables:
     CA MCA PCA RweaveLatex Sweave X abline aov as.formula
     as.graphicsAnnot as.hclust assignCluster axis barplot catdes
     chisq.test col2rgb coltable complete.cases contour cor cutree dev.cur
     dev.list dev.new grey grey.colors hsv kde2d legend lines locator
     mtext par phyper plot plot.MCA plot.new plot.window points qchisq
     qnorm rect rect.hclust rgb2hsv sd segments strheight strwidth
     tab.disjonctif text title var x11 xinch xtabs xy.coords yinch
    Consider adding
     importFrom("grDevices", "as.graphicsAnnot", "col2rgb", "dev.cur",
     "dev.list", "dev.new", "grey", "grey.colors", "hsv",
     "rgb2hsv", "x11", "xy.coords")
     importFrom("graphics", "abline", "axis", "barplot", "contour",
     "legend", "lines", "locator", "mtext", "par", "plot",
     "plot.new", "plot.window", "points", "rect", "segments",
     "strheight", "strwidth", "text", "title", "xinch", "yinch")
     importFrom("stats", "aov", "as.formula", "as.hclust", "chisq.test",
     "complete.cases", "cor", "cutree", "phyper", "qchisq",
     "qnorm", "rect.hclust", "sd", "var", "xtabs")
     importFrom("utils", "RweaveLatex", "Sweave")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.10
Check: R code for possible problems
Result: NOTE
    ENMCA: no visible global function definition for 'dev.list'
    ENMCA : fn: no visible global function definition for 'dev.new'
    ENMCA : fn: no visible global function definition for 'assignCluster'
    ENMCA : fn: no visible global function definition for 'savePlot'
    ENMCA : fn: no visible global function definition for 'dev.cur'
    ENMCA : fn: no visible global function definition for 'catdes'
    ENMCA : fn: no visible global function definition for 'plot.MCA'
    ENMCA : fn: no visible global function definition for 'legend'
    ENMCA : Sweave_f: no visible global function definition for 'Sweave'
    ENMCA : Sweave_f: no visible global function definition for
     'RweaveLatex'
    ENbarplot: no visible global function definition for 'Sweave'
    ENbarplot: no visible global function definition for 'RweaveLatex'
    ENdensity: no visible global function definition for 'kde2d'
    ENdensity: no visible global function definition for 'contour'
    ENdensity: no visible global function definition for 'title'
    ENellipse : ellipse: no visible global function definition for 'qchisq'
    ENellipse: no visible global function definition for 'var'
    ENellipse: no visible global function definition for 'plot'
    ENellipse: no visible global function definition for 'title'
    ENellipse: no visible global function definition for 'abline'
    ENellipse: no visible global function definition for 'text'
    ENellipse: no visible global function definition for 'legend'
    ENellipse: no visible global function definition for 'points'
    ENellipse: no visible global function definition for 'lines'
    ENlisib: no visible global function definition for 'sd'
    ENlisib: no visible global function definition for 'plot.MCA'
    GRmarking: no visible global function definition for 'dev.new'
    GRmarking: no visible global function definition for 'par'
    GRmarking: no visible global function definition for 'barplot'
    GRmarking: no visible global function definition for 'text'
    GRmarking: no visible global function definition for 'mtext'
    MCA2: no visible global function definition for 'tab.disjonctif'
    MCA2: no visible global function definition for 'complete.cases'
    MCA2: no visible global function definition for 'PCA'
    MCA2: no visible global function definition for 'CA'
    MCA2: no visible global function definition for 'aov'
    MCA2: no visible global function definition for 'cor'
    MCA2: no visible global function definition for 'plot.MCA'
    XvsYbarplot: no visible global function definition for 'par'
    XvsYbarplot: no visible global function definition for 'hsv'
    XvsYbarplot: no visible global function definition for 'plot.new'
    XvsYbarplot: no visible global function definition for 'plot.window'
    XvsYbarplot : xyrect: no visible global function definition for 'rect'
    XvsYbarplot: no visible global function definition for 'axis'
    XvsYbarplot: no visible global function definition for 'xinch'
    XvsYbarplot: no visible global function definition for 'yinch'
    XvsYbarplot: no visible global function definition for 'title'
    barplot_function: no visible global function definition for 'hsv'
    barplot_function: no visible global function definition for 'par'
    barplot_function: no visible global function definition for 'x11'
    barplot_function: no visible global function definition for 'barplot'
    barplot_function: no visible global function definition for 'text'
    barplot_function: no visible global function definition for 'mtext'
    barplot_sweave : set.X: no visible binding for global variable 'X'
    barplot_sweave : Sweave_f: no visible global function definition for
     'Sweave'
    barplot_sweave : Sweave_f: no visible global function definition for
     'RweaveLatex'
    barplotclustervsvar: no visible global function definition for 'par'
    barplotclustervsvar: no visible global function definition for
     'col2rgb'
    barplotclustervsvar: no visible global function definition for 'grey'
    barplotclustervsvar: no visible global function definition for
     'rgb2hsv'
    barplotclustervsvar: no visible global function definition for 'hsv'
    barplotclustervsvar: no visible global function definition for
     'plot.new'
    barplotclustervsvar: no visible global function definition for
     'plot.window'
    barplotclustervsvar : xyrect: no visible global function definition for
     'rect'
    barplotclustervsvar: no visible global function definition for 'axis'
    barplotclustervsvar: no visible global function definition for 'xinch'
    barplotclustervsvar: no visible global function definition for 'yinch'
    barplotclustervsvar: no visible global function definition for 'title'
    barplotgroupes: no visible global function definition for 'par'
    barplotgroupes: no visible global function definition for 'grey.colors'
    barplotgroupes: no visible global function definition for 'plot.new'
    barplotgroupes: no visible global function definition for 'plot.window'
    barplotgroupes : xyrect: no visible global function definition for
     'rect'
    barplotgroupes: no visible global function definition for 'axis'
    barplotgroupes: no visible global function definition for 'title'
    catdes2: no visible global function definition for 'xtabs'
    catdes2: no visible global function definition for 'chisq.test'
    catdes2: no visible global function definition for 'phyper'
    catdes2: no visible global function definition for 'qnorm'
    catdes2: no visible binding for global variable 'sd'
    catdes2: no visible global function definition for 'sd'
    chisq.function: no visible global function definition for 'as.formula'
    chisq.function: no visible global function definition for 'xtabs'
    chisq.function: no visible global function definition for 'chisq.test'
    chisq.function: no visible global function definition for 'coltable'
    chisq.function: no visible global function definition for 'par'
    chisq.function: no visible global function definition for 'title'
    chisq.function: no visible global function definition for 'mtext'
    chisq.function: no visible global function definition for 'phyper'
    chisq.function: no visible global function definition for 'qnorm'
    chisq.sweave : Sweave_f: no visible global function definition for
     'Sweave'
    chisq.sweave : Sweave_f: no visible global function definition for
     'RweaveLatex'
    col.barplot: no visible global function definition for 'par'
    col.barplot: no visible global function definition for 'hsv'
    col.barplot: no visible global function definition for 'plot.new'
    col.barplot: no visible global function definition for 'plot.window'
    col.barplot : xyrect: no visible global function definition for 'rect'
    col.barplot: no visible global function definition for 'axis'
    col.barplot: no visible global function definition for 'legend'
    col.barplot: no visible global function definition for 'xinch'
    col.barplot: no visible global function definition for 'yinch'
    col.barplot: no visible global function definition for 'title'
    cuttree.graph: no visible global function definition for 'plot'
    cuttree.graph: no visible global function definition for 'locator'
    cuttree.graph: no visible global function definition for 'rect.hclust'
    cuttree.graph: no visible global function definition for 'cutree'
    cuttree.graph: no visible global function definition for 'as.hclust'
    legend2: no visible global function definition for 'par'
    legend2: no visible global function definition for 'as.graphicsAnnot'
    legend2: no visible global function definition for 'xy.coords'
    legend2 : rect2: no visible global function definition for 'rect'
    legend2 : segments2: no visible global function definition for
     'segments'
    legend2 : points2: no visible global function definition for 'points'
    legend2 : text2: no visible global function definition for 'text'
    legend2: no visible global function definition for 'strwidth'
    legend2: no visible global function definition for 'xinch'
    legend2: no visible global function definition for 'yinch'
    legend2: no visible global function definition for 'strheight'
    p_inertia: no visible global function definition for 'MCA'
    tab_chi2: no visible global function definition for 'chisq.test'
    tab_chi2: no visible global function definition for 'coltable'
    tab_chi2: no visible global function definition for 'par'
    tab_chi2: no visible global function definition for 'title'
    Undefined global functions or variables:
     CA MCA PCA RweaveLatex Sweave X abline aov as.formula
     as.graphicsAnnot as.hclust assignCluster axis barplot catdes
     chisq.test col2rgb coltable complete.cases contour cor cutree dev.cur
     dev.list dev.new grey grey.colors hsv kde2d legend lines locator
     mtext par phyper plot plot.MCA plot.new plot.window points qchisq
     qnorm rect rect.hclust rgb2hsv savePlot sd segments strheight
     strwidth tab.disjonctif text title var x11 xinch xtabs xy.coords
     yinch
    Consider adding
     importFrom("grDevices", "as.graphicsAnnot", "col2rgb", "dev.cur",
     "dev.list", "dev.new", "grey", "grey.colors", "hsv",
     "rgb2hsv", "savePlot", "x11", "xy.coords")
     importFrom("graphics", "abline", "axis", "barplot", "contour",
     "legend", "lines", "locator", "mtext", "par", "plot",
     "plot.new", "plot.window", "points", "rect", "segments",
     "strheight", "strwidth", "text", "title", "xinch", "yinch")
     importFrom("stats", "aov", "as.formula", "as.hclust", "chisq.test",
     "complete.cases", "cor", "cutree", "phyper", "qchisq",
     "qnorm", "rect.hclust", "sd", "var", "xtabs")
     importFrom("utils", "RweaveLatex", "Sweave")
    to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.10
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyPackages in Depends field not imported from:
     ‘FactoMineR’ ‘MASS’ ‘Rcmdr’ ‘SensoMineR’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.10
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.10
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.10
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.10
Check: R code for possible problems
Result: NOTE
    ENMCA: no visible global function definition for ‘dev.list’
    ENMCA : fn: no visible global function definition for ‘dev.new’
    ENMCA : fn: no visible global function definition for ‘assignCluster’
    ENMCA : fn: no visible global function definition for ‘dev.cur’
    ENMCA : fn: no visible global function definition for ‘catdes’
    ENMCA : fn: no visible global function definition for ‘plot.MCA’
    ENMCA : fn: no visible global function definition for ‘legend’
    ENMCA : Sweave_f: no visible global function definition for ‘Sweave’
    ENMCA : Sweave_f: no visible global function definition for
     ‘RweaveLatex’
    ENbarplot: no visible global function definition for ‘Sweave’
    ENbarplot: no visible global function definition for ‘RweaveLatex’
    ENdensity: no visible global function definition for ‘kde2d’
    ENdensity: no visible global function definition for ‘contour’
    ENdensity: no visible global function definition for ‘title’
    ENellipse : ellipse: no visible global function definition for ‘qchisq’
    ENellipse: no visible global function definition for ‘var’
    ENellipse: no visible global function definition for ‘plot’
    ENellipse: no visible global function definition for ‘title’
    ENellipse: no visible global function definition for ‘abline’
    ENellipse: no visible global function definition for ‘text’
    ENellipse: no visible global function definition for ‘legend’
    ENellipse: no visible global function definition for ‘points’
    ENellipse: no visible global function definition for ‘lines’
    ENlisib: no visible global function definition for ‘sd’
    ENlisib: no visible global function definition for ‘plot.MCA’
    GRmarking: no visible global function definition for ‘dev.new’
    GRmarking: no visible global function definition for ‘par’
    GRmarking: no visible global function definition for ‘barplot’
    GRmarking: no visible global function definition for ‘text’
    GRmarking: no visible global function definition for ‘mtext’
    MCA2: no visible global function definition for ‘tab.disjonctif’
    MCA2: no visible global function definition for ‘complete.cases’
    MCA2: no visible global function definition for ‘PCA’
    MCA2: no visible global function definition for ‘CA’
    MCA2: no visible global function definition for ‘aov’
    MCA2: no visible global function definition for ‘cor’
    MCA2: no visible global function definition for ‘plot.MCA’
    XvsYbarplot: no visible global function definition for ‘par’
    XvsYbarplot: no visible global function definition for ‘hsv’
    XvsYbarplot: no visible global function definition for ‘plot.new’
    XvsYbarplot: no visible global function definition for ‘plot.window’
    XvsYbarplot : xyrect: no visible global function definition for ‘rect’
    XvsYbarplot: no visible global function definition for ‘axis’
    XvsYbarplot: no visible global function definition for ‘xinch’
    XvsYbarplot: no visible global function definition for ‘yinch’
    XvsYbarplot: no visible global function definition for ‘title’
    barplot_function: no visible global function definition for ‘hsv’
    barplot_function: no visible global function definition for ‘par’
    barplot_function: no visible global function definition for ‘x11’
    barplot_function: no visible global function definition for ‘barplot’
    barplot_function: no visible global function definition for ‘text’
    barplot_function: no visible global function definition for ‘mtext’
    barplot_sweave : set.X: no visible binding for global variable ‘X’
    barplot_sweave : Sweave_f: no visible global function definition for
     ‘Sweave’
    barplot_sweave : Sweave_f: no visible global function definition for
     ‘RweaveLatex’
    barplotclustervsvar: no visible global function definition for ‘par’
    barplotclustervsvar: no visible global function definition for
     ‘col2rgb’
    barplotclustervsvar: no visible global function definition for ‘grey’
    barplotclustervsvar: no visible global function definition for
     ‘rgb2hsv’
    barplotclustervsvar: no visible global function definition for ‘hsv’
    barplotclustervsvar: no visible global function definition for
     ‘plot.new’
    barplotclustervsvar: no visible global function definition for
     ‘plot.window’
    barplotclustervsvar : xyrect: no visible global function definition for
     ‘rect’
    barplotclustervsvar: no visible global function definition for ‘axis’
    barplotclustervsvar: no visible global function definition for ‘xinch’
    barplotclustervsvar: no visible global function definition for ‘yinch’
    barplotclustervsvar: no visible global function definition for ‘title’
    barplotgroupes: no visible global function definition for ‘par’
    barplotgroupes: no visible global function definition for ‘grey.colors’
    barplotgroupes: no visible global function definition for ‘plot.new’
    barplotgroupes: no visible global function definition for ‘plot.window’
    barplotgroupes : xyrect: no visible global function definition for
     ‘rect’
    barplotgroupes: no visible global function definition for ‘axis’
    barplotgroupes: no visible global function definition for ‘title’
    catdes2: no visible global function definition for ‘xtabs’
    catdes2: no visible global function definition for ‘chisq.test’
    catdes2: no visible global function definition for ‘phyper’
    catdes2: no visible global function definition for ‘qnorm’
    catdes2: no visible binding for global variable ‘sd’
    catdes2: no visible global function definition for ‘sd’
    chisq.function: no visible global function definition for ‘as.formula’
    chisq.function: no visible global function definition for ‘xtabs’
    chisq.function: no visible global function definition for ‘chisq.test’
    chisq.function: no visible global function definition for ‘coltable’
    chisq.function: no visible global function definition for ‘par’
    chisq.function: no visible global function definition for ‘title’
    chisq.function: no visible global function definition for ‘mtext’
    chisq.function: no visible global function definition for ‘phyper’
    chisq.function: no visible global function definition for ‘qnorm’
    chisq.sweave : Sweave_f: no visible global function definition for
     ‘Sweave’
    chisq.sweave : Sweave_f: no visible global function definition for
     ‘RweaveLatex’
    col.barplot: no visible global function definition for ‘par’
    col.barplot: no visible global function definition for ‘hsv’
    col.barplot: no visible global function definition for ‘plot.new’
    col.barplot: no visible global function definition for ‘plot.window’
    col.barplot : xyrect: no visible global function definition for ‘rect’
    col.barplot: no visible global function definition for ‘axis’
    col.barplot: no visible global function definition for ‘legend’
    col.barplot: no visible global function definition for ‘xinch’
    col.barplot: no visible global function definition for ‘yinch’
    col.barplot: no visible global function definition for ‘title’
    cuttree.graph: no visible global function definition for ‘plot’
    cuttree.graph: no visible global function definition for ‘locator’
    cuttree.graph: no visible global function definition for ‘rect.hclust’
    cuttree.graph: no visible global function definition for ‘cutree’
    cuttree.graph: no visible global function definition for ‘as.hclust’
    legend2: no visible global function definition for ‘par’
    legend2: no visible global function definition for ‘as.graphicsAnnot’
    legend2: no visible global function definition for ‘xy.coords’
    legend2 : rect2: no visible global function definition for ‘rect’
    legend2 : segments2: no visible global function definition for
     ‘segments’
    legend2 : points2: no visible global function definition for ‘points’
    legend2 : text2: no visible global function definition for ‘text’
    legend2: no visible global function definition for ‘strwidth’
    legend2: no visible global function definition for ‘xinch’
    legend2: no visible global function definition for ‘yinch’
    legend2: no visible global function definition for ‘strheight’
    p_inertia: no visible global function definition for ‘MCA’
    tab_chi2: no visible global function definition for ‘chisq.test’
    tab_chi2: no visible global function definition for ‘coltable’
    tab_chi2: no visible global function definition for ‘par’
    tab_chi2: no visible global function definition for ‘title’
    Undefined global functions or variables:
     CA MCA PCA RweaveLatex Sweave X abline aov as.formula
     as.graphicsAnnot as.hclust assignCluster axis barplot catdes
     chisq.test col2rgb coltable complete.cases contour cor cutree dev.cur
     dev.list dev.new grey grey.colors hsv kde2d legend lines locator
     mtext par phyper plot plot.MCA plot.new plot.window points qchisq
     qnorm rect rect.hclust rgb2hsv sd segments strheight strwidth
     tab.disjonctif text title var x11 xinch xtabs xy.coords yinch
    Consider adding
     importFrom("grDevices", "as.graphicsAnnot", "col2rgb", "dev.cur",
     "dev.list", "dev.new", "grey", "grey.colors", "hsv",
     "rgb2hsv", "x11", "xy.coords")
     importFrom("graphics", "abline", "axis", "barplot", "contour",
     "legend", "lines", "locator", "mtext", "par", "plot",
     "plot.new", "plot.window", "points", "rect", "segments",
     "strheight", "strwidth", "text", "title", "xinch", "yinch")
     importFrom("stats", "aov", "as.formula", "as.hclust", "chisq.test",
     "complete.cases", "cor", "cutree", "phyper", "qchisq",
     "qnorm", "rect.hclust", "sd", "var", "xtabs")
     importFrom("utils", "RweaveLatex", "Sweave")
    to your NAMESPACE file.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.10
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.10
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 0.10
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.10
Check: R code for possible problems
Result: NOTE
    ENMCA : fn: no visible global function definition for 'assignCluster'
    ENMCA : fn: no visible global function definition for 'catdes'
    ENMCA : fn: no visible global function definition for 'plot.MCA'
    ENdensity: no visible global function definition for 'kde2d'
    ENlisib: no visible global function definition for 'plot.MCA'
    MCA2: no visible global function definition for 'tab.disjonctif'
    MCA2: no visible global function definition for 'PCA'
    MCA2: no visible global function definition for 'CA'
    MCA2: no visible global function definition for 'plot.MCA'
    XvsYbarplot: possible error in hsv(h = 1, s = 1, v = 1, 1, 1): unused
     argument (1)
    XvsYbarplot: possible error in hsv(h = 1, s = 0.4 + (height[i]/max) *
     0.6, v = 1, 1, 1): unused argument (1)
    XvsYbarplot: possible error in hsv(h = a * i, s = 1, v = 1, 1, 1):
     unused argument (1)
    barplot_function: possible error in hsv(h = a * m, s = 1, v = 1, 1, 1):
     unused argument (1)
    barplot_function: possible error in hsv(h = a * m, s = 0.4 +
     (cont[j]/max) * 0.6, v = 1, 1, 1): unused argument (1)
    barplot_sweave : set.X: no visible binding for global variable 'X'
    chisq.function: no visible global function definition for 'coltable'
    col.barplot: possible error in hsv(h = 1, s = 1, v = 1, 1, 1): unused
     argument (1)
    col.barplot: possible error in hsv(h = 1, s = 0.4 + (height[i]/max) *
     0.6, v = 1, 1, 1): unused argument (1)
    col.barplot: possible error in hsv(h = a * i, s = 1, v = 1, 1, 1):
     unused argument (1)
    p_inertia: no visible global function definition for 'MCA'
    tab_chi2: no visible global function definition for 'coltable'
Flavor: r-oldrel-windows-ix86+x86_64