CRAN Package Check Results for Package Epi

Last updated on 2018-01-17 18:46:46 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.19 6.88 198.25 205.13 ERROR
r-devel-linux-x86_64-debian-gcc 2.19 4.99 146.18 151.17 ERROR
r-devel-linux-x86_64-fedora-clang 2.19 229.29 ERROR
r-devel-linux-x86_64-fedora-gcc 2.19 233.78 ERROR
r-devel-windows-ix86+x86_64 2.19 22.00 229.00 251.00 ERROR
r-patched-linux-x86_64 2.19 7.43 236.17 243.60 OK
r-patched-solaris-x86 2.19 394.10 OK
r-release-linux-x86_64 2.19 6.65 238.64 245.29 OK
r-release-windows-ix86+x86_64 2.19 16.00 298.00 314.00 OK
r-release-osx-x86_64 2.19 ERROR
r-oldrel-windows-ix86+x86_64 2.19 20.00 287.00 307.00 OK
r-oldrel-osx-x86_64 2.19 ERROR

Check Details

Version: 2.19
Check: use of S3 registration
Result: WARN
    Registered S3 method from a standard package overwritten by 'Epi':
     method from
     merge.data.frame base
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64

Version: 2.19
Check: examples
Result: ERROR
    Running examples in ‘Epi-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: LCa.fit
    > ### Title: Fit Lee-Carter-type models for rates to arbitrarily shaped
    > ### observations of rates in a Lexis diagram.
    > ### Aliases: LCa.fit print.LCa summary.LCa plot.LCa predict.LCa
    > ### Keywords: models regression
    >
    > ### ** Examples
    >
    > library( Epi )
    > # Load the testis cancer data by Lexis triangles
    > data( testisDK )
    > tc <- subset( testisDK, A>14 & A<60 )
    > head( tc )
     A P D Y
    16 15 1943 0 31188.00
    17 16 1943 0 31654.33
    18 17 1943 0 32084.33
    19 18 1943 0 32681.67
    20 19 1943 0 33005.67
    21 20 1943 0 33302.67
    >
    > # We want to see rates per 100,000 PY
    > tc$Y <- tc$Y / 10^5
    >
    > # Fit the Lee-Carter model with age-period interaction (default)
    > LCa.tc <- LCa.fit( tc, model="ACa", a.ref=30, p.ref=1980, quiet=FALSE, eps=10e-4, maxit=50 )
    Error in vM[!is.na(cf), !is.na(cf)] <- vcv :
     number of items to replace is not a multiple of replacement length
    Calls: LCa.fit -> cbind -> ci.lin
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.19
Check: examples
Result: ERROR
    Running examples in ‘Epi-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: LCa.fit
    > ### Title: Fit Lee-Carter-type models for rates to arbitrarily shaped
    > ### observations of rates in a Lexis diagram.
    > ### Aliases: LCa.fit print.LCa summary.LCa plot.LCa predict.LCa
    > ### Keywords: models regression
    >
    > ### ** Examples
    >
    > library( Epi )
    > # Load the testis cancer data by Lexis triangles
    > data( testisDK )
    > tc <- subset( testisDK, A>14 & A<60 )
    > head( tc )
     A P D Y
    16 15 1943 0 31188.00
    17 16 1943 0 31654.33
    18 17 1943 0 32084.33
    19 18 1943 0 32681.67
    20 19 1943 0 33005.67
    21 20 1943 0 33302.67
    >
    > # We want to see rates per 100,000 PY
    > tc$Y <- tc$Y / 10^5
    >
    > # Fit the Lee-Carter model with age-period interaction (default)
    > LCa.tc <- LCa.fit( tc, model="ACa", a.ref=30, p.ref=1980, quiet=FALSE, eps=10e-4, maxit=50 )
    Error in vM[!is.na(cf), !is.na(cf)] <- vcv :
     number of items to replace is not a multiple of replacement length
    Calls: LCa.fit -> cbind -> ci.lin
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.19
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'Epi-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: LCa.fit
    > ### Title: Fit Lee-Carter-type models for rates to arbitrarily shaped
    > ### observations of rates in a Lexis diagram.
    > ### Aliases: LCa.fit print.LCa summary.LCa plot.LCa predict.LCa
    > ### Keywords: models regression
    >
    > ### ** Examples
    >
    > library( Epi )
    > # Load the testis cancer data by Lexis triangles
    > data( testisDK )
    > tc <- subset( testisDK, A>14 & A<60 )
    > head( tc )
     A P D Y
    16 15 1943 0 31188.00
    17 16 1943 0 31654.33
    18 17 1943 0 32084.33
    19 18 1943 0 32681.67
    20 19 1943 0 33005.67
    21 20 1943 0 33302.67
    >
    > # We want to see rates per 100,000 PY
    > tc$Y <- tc$Y / 10^5
    >
    > # Fit the Lee-Carter model with age-period interaction (default)
    > LCa.tc <- LCa.fit( tc, model="ACa", a.ref=30, p.ref=1980, quiet=FALSE, eps=10e-4, maxit=50 )
    Error in vM[!is.na(cf), !is.na(cf)] <- vcv :
     number of items to replace is not a multiple of replacement length
    Calls: LCa.fit -> cbind -> ci.lin
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 2.19
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'Epi-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: LCa.fit
    > ### Title: Fit Lee-Carter-type models for rates to arbitrarily shaped
    > ### observations of rates in a Lexis diagram.
    > ### Aliases: LCa.fit print.LCa summary.LCa plot.LCa predict.LCa
    > ### Keywords: models regression
    >
    > ### ** Examples
    >
    > library( Epi )
    > # Load the testis cancer data by Lexis triangles
    > data( testisDK )
    > tc <- subset( testisDK, A>14 & A<60 )
    > head( tc )
     A P D Y
    16 15 1943 0 31188.00
    17 16 1943 0 31654.33
    18 17 1943 0 32084.33
    19 18 1943 0 32681.67
    20 19 1943 0 33005.67
    21 20 1943 0 33302.67
    >
    > # We want to see rates per 100,000 PY
    > tc$Y <- tc$Y / 10^5
    >
    > # Fit the Lee-Carter model with age-period interaction (default)
    > LCa.tc <- LCa.fit( tc, model="ACa", a.ref=30, p.ref=1980, quiet=FALSE, eps=10e-4, maxit=50 )
    Error in vM[!is.na(cf), !is.na(cf)] <- vcv :
     number of items to replace is not a multiple of replacement length
    Calls: LCa.fit -> cbind -> ci.lin
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 2.19
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘simLexis.rnw’
     ...
    
    > box(lwd = 3)
    
    > source("../R/simLexis.R", keep.source = TRUE)
    Warning in file(filename, "r", encoding = encoding) :
     cannot open file '../R/simLexis.R': No such file or directory
    
     When sourcing ‘simLexis.R’:
    Error: cannot open the connection
    Execution halted
    when running code in ‘yll.rnw’
     ...
    
    > plyll("Sus")
    
    > source("../R/erl.R", keep.source = TRUE)
    Warning in file(filename, "r", encoding = encoding) :
     cannot open file '../R/erl.R': No such file or directory
    
     When sourcing ‘yll.R’:
    Error: cannot open the connection
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64