CRAN Package Check Results for Package Epi

Last updated on 2015-07-28 06:47:47.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.67 2.55 88.61 91.16 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.67 2.56 82.94 85.50 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.67 175.98 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.67 170.55 NOTE
r-devel-osx-x86_64-clang 1.1.67 170.15 NOTE
r-devel-windows-ix86+x86_64 1.1.67 13.00 158.00 171.00 NOTE
r-patched-linux-x86_64 1.1.67 2.42 86.07 88.49 NOTE
r-patched-solaris-sparc 1.1.67 1160.10 NOTE
r-patched-solaris-x86 1.1.67 244.90 NOTE
r-release-linux-x86_64 1.1.67 2.53 88.37 90.90 NOTE
r-release-osx-x86_64-mavericks 1.1.67 NOTE
r-release-windows-ix86+x86_64 1.1.67 18.00 152.00 170.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.67 20.00 244.00 264.00 NOTE

Check Details

Version: 1.1.67
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1.67
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘MASS’ ‘cmprsk’ ‘etm’ ‘mstate’ ‘splines’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.67
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.Icens print.floated
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1.67
Check: R code for possible problems
Result: NOTE
    Aplot: no visible global function definition for ‘gray’
    Aplot: no visible global function definition for ‘par’
    Aplot: no visible global function definition for ‘matplot’
    Aplot: no visible global function definition for ‘axis’
    Aplot: no visible global function definition for ‘abline’
    Aplot: no visible global function definition for ‘box’
    Aplot: no visible global function definition for ‘matlines’
    Aplot: no visible global function definition for ‘text’
    Cplot: no visible global function definition for ‘gray’
    Cplot: no visible global function definition for ‘par’
    Cplot: no visible global function definition for ‘matplot’
    Cplot: no visible global function definition for ‘axis’
    Cplot: no visible global function definition for ‘abline’
    Cplot: no visible global function definition for ‘box’
    Cplot: no visible global function definition for ‘matlines’
    Cplot: no visible global function definition for ‘text’
    Icens: no visible global function definition for ‘coef’
    Icens: no visible binding for global variable ‘quantile’
    Lexis.diagram: no visible global function definition for ‘gray’
    Lexis.diagram: no visible global function definition for ‘plot’
    Lexis.diagram: no visible global function definition for ‘axis’
    Lexis.diagram: no visible global function definition for ‘box’
    Lexis.diagram: no visible global function definition for ‘abline’
    Lexis.diagram: no visible global function definition for ‘segments’
    Lexis.lines: no visible global function definition for ‘par’
    Lexis.lines: no visible global function definition for ‘segments’
    Lexis.lines: no visible global function definition for ‘points’
    N2Y: no visible global function definition for ‘xtabs’
    Ns: no visible global function definition for ‘ns’
    PY.ann.Lexis: no visible global function definition for ‘text’
    Pplot: no visible global function definition for ‘gray’
    Pplot: no visible global function definition for ‘par’
    Pplot: no visible global function definition for ‘matplot’
    Pplot: no visible global function definition for ‘axis’
    Pplot: no visible global function definition for ‘abline’
    Pplot: no visible global function definition for ‘box’
    Pplot: no visible global function definition for ‘matlines’
    Pplot: no visible global function definition for ‘text’
    ROC: no visible global function definition for ‘gray’
    ROC: no visible global function definition for ‘glm’
    ROC: no visible binding for global variable ‘binomial’
    ROC: no visible global function definition for ‘addmargins’
    ROC: no visible global function definition for ‘abline’
    ROC: no visible global function definition for ‘box’
    ROC: no visible global function definition for ‘text’
    ROC: no visible global function definition for ‘strwidth’
    ROC: no visible global function definition for ‘quantile’
    ROC: no visible global function definition for ‘lines’
    ROC: no visible global function definition for ‘par’
    ROC.tic: no visible global function definition for ‘lines’
    ROC.tic: no visible global function definition for ‘text’
    Wald: no visible global function definition for ‘pchisq’
    apc.fit: no visible global function definition for ‘complete.cases’
    apc.fit: no visible global function definition for ‘model.matrix’
    apc.fit: no visible global function definition for ‘quantile’
    apc.fit: no visible global function definition for ‘ns’
    apc.fit: no visible global function definition for ‘bs’
    apc.fit: no visible global function definition for ‘glm’
    apc.fit: no visible binding for global variable ‘poisson’
    apc.fit: no visible binding for global variable ‘binomial’
    apc.fit: no visible global function definition for ‘update’
    apc.fit: no visible global function definition for ‘anova’
    apc.fit: no visible global function definition for ‘predict’
    apc.frame: no visible global function definition for ‘gray’
    apc.frame: no visible global function definition for ‘plot’
    apc.frame: no visible global function definition for ‘abline’
    apc.frame: no visible global function definition for ‘segments’
    apc.frame: no visible global function definition for ‘box’
    apc.frame: no visible global function definition for ‘axis’
    apc.frame: no visible global function definition for ‘par’
    apc.frame: no visible global function definition for ‘mtext’
    apc.lines: no visible global function definition for ‘median’
    apc.lines: no visible global function definition for ‘matlines’
    apc.lines: no visible global function definition for ‘points’
    apc.lines: no visible global function definition for ‘rug’
    apc.lines: no visible global function definition for ‘box’
    apc.plot: no visible global function definition for ‘segments’
    boxes.Lexis: no visible global function definition for ‘par’
    boxes.Lexis: no visible global function definition for ‘plot’
    boxes.Lexis: no visible global function definition for ‘strheight’
    boxes.Lexis: no visible global function definition for ‘strwidth’
    boxes.Lexis: no visible global function definition for ‘flush.console’
    boxes.Lexis: no visible global function definition for ‘locator’
    boxes.Lexis: no visible global function definition for ‘text’
    boxes.MS: no visible global function definition for ‘par’
    boxes.MS: no visible global function definition for ‘plot’
    ci.cum: no visible global function definition for ‘coef’
    ci.cum: no visible global function definition for ‘vcov’
    ci.cum: no visible global function definition for ‘fixed.effects’
    ci.cum: no visible global function definition for ‘fixef’
    ci.cum: no visible global function definition for ‘mvrnorm’
    ci.lin: no visible global function definition for ‘coef’
    ci.lin: no visible global function definition for ‘fixed.effects’
    ci.lin: no visible global function definition for ‘fixef’
    ci.lin: no visible global function definition for ‘mvrnorm’
    ci.lin: no visible global function definition for ‘pnorm’
    ci.mat: no visible global function definition for ‘qt’
    ci.pd: no visible global function definition for ‘qnorm’
    ci.pred: no visible global function definition for ‘predict’
    clogistic: no visible global function definition for ‘model.response’
    clogistic: no visible global function definition for ‘is.empty.model’
    clogistic: no visible global function definition for ‘model.matrix’
    clogistic: no visible global function definition for ‘model.offset’
    clogistic: no visible global function definition for ‘model.extract’
    clogistic: no visible global function definition for ‘.getXlevels’
    contr.orth: no visible global function definition for ‘contr.sum’
    cp.lines: no visible global function definition for ‘lines’
    cp.matlines: no visible global function definition for ‘matlines’
    cp.matpoints: no visible global function definition for ‘matpoints’
    cp.points: no visible global function definition for ‘points’
    crr.Lexis: no visible global function definition for ‘model.matrix’
    dbox: no visible global function definition for ‘par’
    dbox: no visible global function definition for ‘rect’
    dbox: no visible global function definition for ‘segments’
    effx: no visible binding for global variable ‘gaussian’
    effx: no visible global function definition for ‘binomial’
    effx: no visible binding for global variable ‘logit’
    effx: no visible global function definition for ‘poisson’
    effx: no visible global function definition for ‘glm’
    effx: no visible global function definition for ‘anova’
    effx.match: no visible global function definition for ‘clogit’
    effx.match: no visible global function definition for ‘anova’
    entry: no visible global function definition for ‘ave’
    exit: no visible global function definition for ‘ave’
    expand.data: no visible global function definition for ‘model.matrix’
    fillarr: no visible global function definition for ‘par’
    fillarr: no visible global function definition for ‘arrows’
    fit.add: no visible global function definition for ‘predict’
    fit.add: no visible global function definition for ‘glm’
    fit.add: no visible global function definition for ‘binomial’
    fit.baseline: no visible global function definition for ‘glm’
    fit.baseline: no visible binding for global variable ‘binomial’
    fit.baseline: no visible global function definition for ‘fitted’
    fit.baseline: no visible global function definition for ‘binomial’
    fit.mult: no visible global function definition for ‘coef’
    fit.mult: no visible global function definition for ‘glm’
    fit.mult: no visible global function definition for ‘binomial’
    fit.mult: no visible binding for global variable ‘cloglog’
    float: no visible global function definition for ‘vcov’
    ftrend: no visible global function definition for ‘model.matrix’
    ftrend: no visible binding for global variable ‘weighted.mean’
    ftrend: no visible global function definition for ‘nlm’
    gen.exp : <anonymous>: no visible global function definition for
     ‘approx’
    lines.Lexis.1D: no visible global function definition for ‘segments’
    lines.Lexis.1D: no visible global function definition for ‘abline’
    lines.Lexis.2D: no visible global function definition for ‘segments’
    lines.apc: no visible global function definition for ‘median’
    lines.apc: no visible global function definition for ‘matlines’
    lines.apc: no visible global function definition for ‘points’
    lines.apc: no visible global function definition for ‘rug’
    lines.apc: no visible global function definition for ‘box’
    lines.pState: no visible global function definition for ‘rainbow’
    lines.pState: no visible global function definition for ‘polygon’
    linesEst: no visible global function definition for ‘par’
    linesEst: no visible global function definition for ‘segments’
    linesEst: no visible global function definition for ‘points’
    mh: no visible global function definition for ‘qnorm’
    mh: no visible global function definition for ‘pchisq’
    mh.power: no visible global function definition for ‘pnorm’
    mh.power: no visible global function definition for ‘qnorm’
    pc.lines: no visible global function definition for ‘lines’
    pc.matlines: no visible global function definition for ‘matlines’
    pc.matpoints: no visible global function definition for ‘matpoints’
    pc.points: no visible global function definition for ‘points’
    pctab: no visible global function definition for ‘addmargins’
    plot.Lexis.1D: no visible global function definition for ‘plot’
    plot.Lexis.1D: no visible global function definition for ‘segments’
    plot.Lexis.1D: no visible global function definition for ‘points’
    plot.Lexis.1D: no visible global function definition for ‘abline’
    plot.Lexis.2D: no visible global function definition for ‘par’
    plot.Lexis.2D: no visible global function definition for ‘plot’
    plot.Lexis.2D: no visible global function definition for ‘abline’
    plot.Lexis.2D: no visible global function definition for ‘box’
    plot.Lexis.2D: no visible global function definition for ‘segments’
    plot.Lexis.2D: no visible global function definition for ‘points’
    plot.apc: no visible global function definition for ‘segments’
    plot.pState: no visible global function definition for ‘rainbow’
    plot.pState: no visible global function definition for ‘matplot’
    plotEst: no visible global function definition for ‘gray’
    plotEst: no visible global function definition for ‘plot.new’
    plotEst: no visible global function definition for ‘strwidth’
    plotEst: no visible global function definition for ‘par’
    plotEst: no visible global function definition for ‘plot.window’
    plotEst: no visible global function definition for ‘abline’
    plotEst: no visible global function definition for ‘axis’
    plotEst: no visible global function definition for ‘mtext’
    plotevent: no visible global function definition for ‘plot’
    plotevent: no visible global function definition for ‘mtext’
    plotevent: no visible global function definition for ‘segments’
    points.Lexis.1D: no visible global function definition for ‘points’
    points.Lexis.2D: no visible global function definition for ‘points’
    pointsEst: no visible global function definition for ‘par’
    pointsEst: no visible global function definition for ‘segments’
    pointsEst: no visible global function definition for ‘points’
    print.clogistic: no visible global function definition for ‘pchisq’
    print.floated: no visible global function definition for ‘qnorm’
    print.mh: no visible global function definition for ‘pchisq’
    rateplot: no visible global function definition for ‘gray’
    rateplot: no visible global function definition for ‘par’
    setStatus.factor: no visible global function definition for ‘str’
    sim1: no visible global function definition for ‘runif’
    simX: no visible global function definition for ‘predict’
    status: no visible global function definition for ‘ave’
    steplines: no visible global function definition for ‘lines’
    summary.Lexis: no visible global function definition for ‘addmargins’
    tbox: no visible global function definition for ‘par’
    tbox: no visible global function definition for ‘rect’
    tbox: no visible global function definition for ‘text’
    twoby2 : bin.ci: no visible global function definition for ‘qnorm’
    twoby2: no visible global function definition for ‘qnorm’
    twoby2: no visible global function definition for ‘pchisq’
    twoby2: no visible global function definition for ‘fisher.test’
    valid.times: no visible global function definition for ‘complete.cases’
    Undefined global functions or variables:
     .getXlevels abline addmargins anova approx arrows ave axis binomial
     box bs clogit cloglog coef complete.cases contr.sum fisher.test
     fitted fixed.effects fixef flush.console gaussian glm gray
     is.empty.model lines locator logit matlines matplot matpoints median
     model.extract model.matrix model.offset model.response mtext mvrnorm
     nlm ns par pchisq plot plot.new plot.window pnorm points poisson
     polygon predict qnorm qt quantile rainbow rect rug runif segments str
     strheight strwidth text update vcov weighted.mean xtabs
    Consider adding
     importFrom("grDevices", "gray", "rainbow")
     importFrom("graphics", "abline", "arrows", "axis", "box", "lines",
     "locator", "matlines", "matplot", "matpoints", "mtext",
     "par", "plot", "plot.new", "plot.window", "points",
     "polygon", "rect", "rug", "segments", "strheight",
     "strwidth", "text")
     importFrom("stats", ".getXlevels", "addmargins", "anova", "approx",
     "ave", "binomial", "coef", "complete.cases", "contr.sum",
     "fisher.test", "fitted", "gaussian", "glm",
     "is.empty.model", "median", "model.extract", "model.matrix",
     "model.offset", "model.response", "nlm", "pchisq", "pnorm",
     "poisson", "predict", "qnorm", "qt", "quantile", "runif",
     "update", "vcov", "weighted.mean", "xtabs")
     importFrom("utils", "flush.console", "str")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1.67
Check: R code for possible problems
Result: NOTE
    Ns: no visible global function definition for ‘ns’
    apc.fit: no visible global function definition for ‘ns’
    apc.fit: no visible global function definition for ‘bs’
    ci.cum: no visible global function definition for ‘fixed.effects’
    ci.cum: no visible global function definition for ‘fixef’
    ci.cum: no visible global function definition for ‘mvrnorm’
    ci.lin: no visible global function definition for ‘fixed.effects’
    ci.lin: no visible global function definition for ‘fixef’
    ci.lin: no visible global function definition for ‘mvrnorm’
    effx.match: no visible global function definition for ‘clogit’
    Undefined global functions or variables:
     bs clogit fixed.effects fixef mvrnorm ns
Flavor: r-devel-osx-x86_64-clang

Version: 1.1.67
Check: R code for possible problems
Result: NOTE
    Ns: no visible global function definition for ‘ns’
    apc.fit: no visible global function definition for ‘ns’
    apc.fit: no visible global function definition for ‘bs’
    ci.cum: no visible global function definition for ‘fixed.effects’
    ci.cum: no visible global function definition for ‘fixef’
    ci.cum: no visible global function definition for ‘mvrnorm’
    ci.lin: no visible global function definition for ‘fixed.effects’
    ci.lin: no visible global function definition for ‘fixef’
    ci.lin: no visible global function definition for ‘mvrnorm’
    effx.match: no visible global function definition for ‘clogit’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64