CRAN Package Check Results for Package EpiEstim

Last updated on 2015-07-03 11:47:01.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-2 0.55 10.92 11.47 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-2 0.54 10.54 11.08 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-2 20.71 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-2 20.27 NOTE
r-devel-osx-x86_64-clang 1.1-2 22.71 NOTE
r-devel-windows-ix86+x86_64 1.1-2 4.00 19.00 23.00 NOTE
r-patched-linux-x86_64 1.1-2 0.58 11.15 11.72 NOTE
r-patched-solaris-sparc 1.1-2 160.50 NOTE
r-patched-solaris-x86 1.1-2 32.80 NOTE
r-release-linux-x86_64 1.1-2 0.58 11.16 11.74 NOTE
r-release-osx-x86_64-mavericks 1.1-2 NOTE
r-release-windows-ix86+x86_64 1.1-2 3.00 20.00 23.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-2 5.00 27.00 32.00 OK

Check Details

Version: 1.1-2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1-2
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘sync.x64.ffs_db’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-2
Check: R code for possible problems
Result: NOTE
    DiscrSI : CDFGamma: no visible global function definition for ‘pgamma’
    EstimateR : SampleFromPosterior : <anonymous>: no visible global
     function definition for ‘rgamma’
    EstimateR: no visible global function definition for ‘rnorm’
    EstimateR: no visible binding for global variable ‘sd’
    EstimateR: no visible binding for global variable ‘quantile’
    EstimateR: no visible binding for global variable ‘median’
    EstimateR: no visible global function definition for ‘qgamma’
    EstimateR: no visible global function definition for ‘par’
    EstimateR: no visible global function definition for ‘title’
    EstimateR: no visible global function definition for ‘polygon’
    EstimateR: no visible global function definition for ‘lines’
    EstimateR: no visible global function definition for ‘legend’
    EstimateR: no visible global function definition for ‘hist’
    WT : DrawOneSetOfAncestries: no visible global function definition for
     ‘rmultinom’
    WT: no visible binding for global variable ‘quantile’
    WT: no visible binding for global variable ‘sd’
    WT: no visible global function definition for ‘par’
    WT: no visible global function definition for ‘segments’
    WT: no visible global function definition for ‘points’
    WT: no visible global function definition for ‘lines’
    WT: no visible global function definition for ‘legend’
    Undefined global functions or variables:
     hist legend lines median par pgamma points polygon qgamma quantile
     rgamma rmultinom rnorm sd segments title
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1-2
Check: Rd line widths
Result: NOTE
    Rd file 'Flu1918.Rd':
     \examples lines wider than 100 characters:
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'Flu2009.Rd':
     \examples lines wider than 100 characters:
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'Measles1861.Rd':
     \examples lines wider than 100 characters:
     EstimateR(Measles1861$Incidence, T.Start=17:42, T.End=23:48, method="NonParametricSI",
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'SARS2003.Rd':
     \examples lines wider than 100 characters:
     EstimateR(SARS2003$Incidence, T.Start=14:101, T.End=20:107, method="NonParametricSI",
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'Smallpox1972.Rd':
     \examples lines wider than 100 characters:
     EstimateR(Smallpox1972$Incidence, T.Start=27:51, T.End=33:57, method="NonParametricSI",
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64