CRAN Package Check Results for Package EpiEstim

Last updated on 2016-12-10 23:48:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-2 0.62 14.17 14.79 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-2 0.68 13.67 14.35 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-2 24.99 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.1-2 23.04 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 1.1-2 21.38 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.1-2 6.00 42.00 48.00 NOTE
r-patched-linux-x86_64 1.1-2 0.61 11.79 12.40 NOTE
r-patched-solaris-sparc 1.1-2 132.50 NOTE
r-patched-solaris-x86 1.1-2 28.50 NOTE
r-release-linux-x86_64 1.1-2 0.60 11.50 12.10 NOTE
r-release-osx-x86_64-mavericks 1.1-2 NOTE
r-release-windows-ix86+x86_64 1.1-2 3.00 27.00 30.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-2 3.00 26.00 29.00 NOTE

Check Details

Version: 1.1-2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-2
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘sync.x64.ffs_db’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-2
Check: R code for possible problems
Result: NOTE
    DiscrSI : CDFGamma: no visible global function definition for ‘pgamma’
    EstimateR : SampleFromPosterior : <anonymous>: no visible global
     function definition for ‘rgamma’
    EstimateR: no visible global function definition for ‘rnorm’
    EstimateR: no visible binding for global variable ‘sd’
    EstimateR: no visible binding for global variable ‘quantile’
    EstimateR: no visible binding for global variable ‘median’
    EstimateR: no visible global function definition for ‘qgamma’
    EstimateR: no visible global function definition for ‘par’
    EstimateR: no visible global function definition for ‘title’
    EstimateR: no visible global function definition for ‘polygon’
    EstimateR: no visible global function definition for ‘lines’
    EstimateR: no visible global function definition for ‘legend’
    EstimateR: no visible global function definition for ‘hist’
    WT : DrawOneSetOfAncestries: no visible global function definition for
     ‘rmultinom’
    WT: no visible binding for global variable ‘quantile’
    WT: no visible binding for global variable ‘sd’
    WT: no visible global function definition for ‘par’
    WT: no visible global function definition for ‘segments’
    WT: no visible global function definition for ‘points’
    WT: no visible global function definition for ‘lines’
    WT: no visible global function definition for ‘legend’
    Undefined global functions or variables:
     hist legend lines median par pgamma points polygon qgamma quantile
     rgamma rmultinom rnorm sd segments title
    Consider adding
     importFrom("graphics", "hist", "legend", "lines", "par", "points",
     "polygon", "segments", "title")
     importFrom("stats", "median", "pgamma", "qgamma", "quantile", "rgamma",
     "rmultinom", "rnorm", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1-2
Check: Rd line widths
Result: NOTE
    Rd file 'Flu1918.Rd':
     \examples lines wider than 100 characters:
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'Flu2009.Rd':
     \examples lines wider than 100 characters:
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'Measles1861.Rd':
     \examples lines wider than 100 characters:
     EstimateR(Measles1861$Incidence, T.Start=17:42, T.End=23:48, method="NonParametricSI",
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'SARS2003.Rd':
     \examples lines wider than 100 characters:
     EstimateR(SARS2003$Incidence, T.Start=14:101, T.End=20:107, method="NonParametricSI",
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'Smallpox1972.Rd':
     \examples lines wider than 100 characters:
     EstimateR(Smallpox1972$Incidence, T.Start=27:51, T.End=33:57, method="NonParametricSI",
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-2
Flags: --no-stop-on-test-error
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.1-2
Flags: --no-stop-on-test-error
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘sync.x64.ffs_db’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1-2
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    DiscrSI : CDFGamma: no visible global function definition for ‘pgamma’
    EstimateR : SampleFromPosterior : <anonymous>: no visible global
     function definition for ‘rgamma’
    EstimateR: no visible global function definition for ‘rnorm’
    EstimateR: no visible binding for global variable ‘sd’
    EstimateR: no visible binding for global variable ‘quantile’
    EstimateR: no visible binding for global variable ‘median’
    EstimateR: no visible global function definition for ‘qgamma’
    EstimateR: no visible global function definition for ‘par’
    EstimateR: no visible global function definition for ‘title’
    EstimateR: no visible global function definition for ‘polygon’
    EstimateR: no visible global function definition for ‘lines’
    EstimateR: no visible global function definition for ‘legend’
    EstimateR: no visible global function definition for ‘hist’
    WT : DrawOneSetOfAncestries: no visible global function definition for
     ‘rmultinom’
    WT: no visible binding for global variable ‘quantile’
    WT: no visible binding for global variable ‘sd’
    WT: no visible global function definition for ‘par’
    WT: no visible global function definition for ‘segments’
    WT: no visible global function definition for ‘points’
    WT: no visible global function definition for ‘lines’
    WT: no visible global function definition for ‘legend’
    Undefined global functions or variables:
     hist legend lines median par pgamma points polygon qgamma quantile
     rgamma rmultinom rnorm sd segments title
    Consider adding
     importFrom("graphics", "hist", "legend", "lines", "par", "points",
     "polygon", "segments", "title")
     importFrom("stats", "median", "pgamma", "qgamma", "quantile", "rgamma",
     "rmultinom", "rnorm", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.1-2
Flags: --no-stop-on-test-error
Check: Rd line widths
Result: NOTE
    Rd file 'Flu1918.Rd':
     \examples lines wider than 100 characters:
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'Flu2009.Rd':
     \examples lines wider than 100 characters:
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'Measles1861.Rd':
     \examples lines wider than 100 characters:
     EstimateR(Measles1861$Incidence, T.Start=17:42, T.End=23:48, method="NonParametricSI",
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'SARS2003.Rd':
     \examples lines wider than 100 characters:
     EstimateR(SARS2003$Incidence, T.Start=14:101, T.End=20:107, method="NonParametricSI",
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    Rd file 'Smallpox1972.Rd':
     \examples lines wider than 100 characters:
     EstimateR(Smallpox1972$Incidence, T.Start=27:51, T.End=33:57, method="NonParametricSI",
     # the estimate of the instantaneous reproduction number over the 7-day window finishing on that day.
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc