CRAN Package Check Results for Package ExomeDepth

Last updated on 2015-07-28 23:47:30.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.5 9.97 85.32 95.28 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.5 11.35 79.92 91.27 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.5 191.89 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.5 185.41 NOTE
r-devel-osx-x86_64-clang 1.1.5 159.07 NOTE
r-devel-windows-ix86+x86_64 1.1.5 45.00 170.00 215.00 NOTE
r-patched-linux-x86_64 1.1.5 10.46 80.49 90.95 NOTE
r-patched-solaris-sparc 1.1.5 1143.20 NOTE
r-patched-solaris-x86 1.1.5 243.20 NOTE
r-release-linux-x86_64 1.1.5 10.45 80.96 91.41 NOTE
r-release-osx-x86_64-mavericks 1.1.5 OK
r-release-windows-ix86+x86_64 1.1.5 63.00 152.00 215.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.5 73.00 236.00 309.00 NOTE

Check Details

Version: 1.1.5
Check: R code for possible problems
Result: NOTE
    plot,ExomeDepth-ANY: warning in tapply(IND = exon.array$short.name,
     exon.array$start, FUN = min): partial argument match of ‘IND’ to
     ‘INDEX’
    count.everted.reads: no visible global function definition for
     ‘read.delim’
    get.power.betabinom: no visible global function definition for ‘dbinom’
    get.power.betabinom: no visible global function definition for ‘dbeta’
    getBamCounts: no visible global function definition for ‘read.delim’
    select.reference.set: no visible global function definition for
     ‘quantile’
    select.reference.set : <anonymous>: no visible global function
     definition for ‘cor’
    select.reference.set: no visible global function definition for
     ‘median’
    CallCNVs,ExomeDepth: no visible global function definition for ‘cor’
    initialize,ExomeDepth: no visible global function definition for
     ‘as.formula’
    initialize,ExomeDepth: no visible global function definition for
     ‘quantile’
    initialize,ExomeDepth: no visible global function definition for
     ‘approxfun’
    plot,ExomeDepth-ANY: no visible global function definition for ‘layout’
    plot,ExomeDepth-ANY: no visible global function definition for ‘par’
    plot,ExomeDepth-ANY: no visible global function definition for
     ‘polygon’
    plot,ExomeDepth-ANY: no visible global function definition for ‘points’
    plot,ExomeDepth-ANY: no visible global function definition for
     ‘axTicks’
    plot,ExomeDepth-ANY: no visible global function definition for ‘axis’
    plot,ExomeDepth-ANY : <anonymous>: no visible global function
     definition for ‘lines’
    plot,ExomeDepth-ANY : <anonymous>: no visible global function
     definition for ‘text’
    Undefined global functions or variables:
     approxfun as.formula axTicks axis cor dbeta dbinom layout lines
     median par points polygon quantile read.delim text
    Consider adding
     importFrom("graphics", "axTicks", "axis", "layout", "lines", "par",
     "points", "polygon", "text")
     importFrom("stats", "approxfun", "as.formula", "cor", "dbeta",
     "dbinom", "median", "quantile")
     importFrom("utils", "read.delim")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1.5
Check: R code for possible problems
Result: NOTE
    plot,ExomeDepth-ANY: warning in tapply(IND = exon.array$short.name,
     exon.array$start, FUN = min): partial argument match of 'IND' to
     'INDEX'
Flavor: r-devel-osx-x86_64-clang

Version: 1.1.5
Check: R code for possible problems
Result: NOTE
    plot,ExomeDepth-ANY : .local: warning in tapply(IND =
     exon.array$short.name, exon.array$start, FUN = min): partial argument
     match of ‘IND’ to ‘INDEX’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64