CRAN Package Check Results for Package ExomeDepth

Last updated on 2017-05-22 16:48:34.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.10 14.11 130.13 144.25 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.10 14.07 128.36 142.42 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.10 317.53 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.1.10 304.03 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.1.10 84.00 360.00 444.00 NOTE
r-patched-linux-x86_64 1.1.10 14.15 129.86 144.01 NOTE
r-patched-solaris-sparc 1.1.10 2030.40 NOTE
r-patched-solaris-x86 1.1.10 418.00 NOTE
r-release-linux-x86_64 1.1.10 14.42 129.31 143.73 NOTE
r-release-windows-ix86+x86_64 1.1.10 56.00 376.00 432.00 NOTE
r-release-osx-x86_64 1.1.10 ERROR
r-oldrel-windows-ix86+x86_64 1.1.10 63.00 324.00 387.00 NOTE
r-oldrel-osx-x86_64 1.1.10 OK

Check Details

Version: 1.1.10
Check: R code for possible problems
Result: NOTE
    countBamInGRanges.exomeDepth: no visible global function definition for
     ‘as’
    Undefined global functions or variables:
     as
    Consider adding
     importFrom("methods", "as")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.10
Check: compiled code
Result: NOTE
    File ‘ExomeDepth/libs/ExomeDepth.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.10
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    countBamInGRanges.exomeDepth: no visible global function definition for
     ‘as’
    Undefined global functions or variables:
     as
    Consider adding
     importFrom("methods", "as")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.10
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘ExomeDepth/libs/ExomeDepth.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.10
Check: package dependencies
Result: ERROR
    Packages required but not available:
     ‘Biostrings’ ‘Rsamtools’ ‘GenomicRanges’ ‘GenomicAlignments’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64