CRAN Package Check Results for Package ExomeDepth

Last updated on 2015-07-03 09:46:54.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.5 9.70 80.72 90.42 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.5 10.81 80.25 91.06 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.5 188.83 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.5 182.78 NOTE
r-devel-osx-x86_64-clang 1.1.5 160.75 OK
r-devel-windows-ix86+x86_64 1.1.5 46.00 172.00 218.00 NOTE
r-patched-linux-x86_64 1.1.5 10.64 78.62 89.27 OK
r-patched-solaris-sparc 1.1.5 987.90 OK
r-patched-solaris-x86 1.1.5 241.80 OK
r-release-linux-x86_64 1.1.5 13.89 80.90 94.79 OK
r-release-osx-x86_64-mavericks 1.1.5 OK
r-release-windows-ix86+x86_64 1.1.5 42.00 158.00 200.00 OK
r-oldrel-windows-ix86+x86_64 1.1.5 58.00 254.00 312.00 OK

Check Details

Version: 1.1.5
Check: R code for possible problems
Result: NOTE
    count.everted.reads: no visible global function definition for
     ‘read.delim’
    get.power.betabinom: no visible global function definition for ‘dbinom’
    get.power.betabinom: no visible global function definition for ‘dbeta’
    getBamCounts: no visible global function definition for ‘read.delim’
    select.reference.set: no visible global function definition for
     ‘quantile’
    select.reference.set : <anonymous>: no visible global function
     definition for ‘cor’
    select.reference.set: no visible global function definition for
     ‘median’
    CallCNVs,ExomeDepth: no visible global function definition for ‘cor’
    Undefined global functions or variables:
     cor dbeta dbinom median quantile read.delim
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64