CRAN Package Check Results for Package FTICRMS

Last updated on 2015-07-02 21:46:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.8 2.68 32.56 35.24 NOTE
r-devel-linux-x86_64-debian-gcc 0.8 2.68 33.05 35.73 NOTE
r-devel-linux-x86_64-fedora-clang 0.8 73.65 NOTE
r-devel-linux-x86_64-fedora-gcc 0.8 70.00 NOTE
r-devel-osx-x86_64-clang 0.8 65.78 NOTE
r-devel-windows-ix86+x86_64 0.8 8.00 47.00 55.00 NOTE
r-patched-linux-x86_64 0.8 2.70 32.37 35.06 NOTE
r-patched-solaris-sparc 0.8 443.10 NOTE
r-patched-solaris-x86 0.8 100.80 NOTE
r-release-linux-x86_64 0.8 2.97 32.36 35.34 NOTE
r-release-osx-x86_64-mavericks 0.8 NOTE
r-release-windows-ix86+x86_64 0.8 9.00 46.00 55.00 NOTE
r-oldrel-windows-ix86+x86_64 0.8 10.00 54.00 64.00 NOTE

Check Details

Version: 0.8
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘Matrix’ ‘splines’
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.8
Check: R code for possible problems
Result: NOTE
    .Rsquared: no visible global function definition for ‘poly’
    .alignment: no visible global function definition for ‘lm’
    .alignment: no visible global function definition for ‘as.formula’
    .biweight.FTICRMS: no visible global function definition for ‘median’
    .cluster.peaks: no visible global function definition for ‘lm’
    .cluster.peaks: no visible global function definition for ‘predict’
    .cluster.peaks: no visible global function definition for ‘median’
    baseline : <anonymous>: no visible global function definition for
     ‘qnorm’
    baseline: no visible global function definition for ‘median’
    baseline: no visible global function definition for ‘new’
    display.tests: no visible binding for global variable ‘parameter.list’
    display.tests: no visible binding for global variable ‘sigs’
    display.tests: no visible binding for global variable ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘parameter.list’
    run.analysis: no visible global function definition for ‘terms’
    run.analysis: no visible binding for global variable ‘t.test’
    run.analysis: no visible binding for global variable ‘lm’
    run.analysis : pval.fcn: no visible binding for global variable ‘pf’
    run.analysis: no visible binding for global variable ‘centers’
    run.baselines: no visible global function definition for ‘read.csv’
    run.baselines: no visible global function definition for ‘read.table’
    run.cluster.matrix: no visible binding for global variable ‘amps’
    run.cluster.matrix: no visible global function definition for ‘median’
    run.cluster.matrix: no visible global function definition for ‘predict’
    run.cluster.matrix: no visible global function definition for ‘lm’
    run.cluster.matrix: no visible binding for global variable
     ‘clust.constant’
    run.cluster.matrix: no visible binding for global variable ‘spect.base’
    run.lrg.peaks: no visible binding for global variable ‘spect.base’
    run.lrg.peaks: no visible global function definition for ‘approx’
    run.strong.peaks: no visible global function definition for ‘median’
    run.strong.peaks: no visible global function definition for ‘predict’
    run.strong.peaks: no visible global function definition for ‘cor’
    Undefined global functions or variables:
     amps approx as.formula centers clust.constant clust.mat cor lm median
     new parameter.list pf poly predict qnorm read.csv read.table sigs
     spect.base t.test terms
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.8
Check: Rd files
Result: NOTE
    prepare_Rd: baseline.Rd:123: Dropping empty section \examples
    prepare_Rd: display.tests.Rd:43: Dropping empty section \references
    prepare_Rd: display.tests.Rd:57: Dropping empty section \examples
    prepare_Rd: extract.pars.Rd:114: Dropping empty section \examples
    prepare_Rd: locate.peaks.Rd:72: Dropping empty section \examples
    prepare_Rd: make.par.file.Rd:117: Dropping empty section \examples
    prepare_Rd: run.all.Rd:76: Dropping empty section \examples
    prepare_Rd: run.analysis.Rd:153: Dropping empty section \examples
    prepare_Rd: run.baselines.Rd:91: Dropping empty section \examples
    prepare_Rd: run.cluster.matrix.Rd:171: Dropping empty section \examples
    prepare_Rd: run.lrg.peaks.Rd:95: Dropping empty section \examples
    prepare_Rd: run.peaks.Rd:99: Dropping empty section \examples
    prepare_Rd: run.strong.peaks.Rd:115: Dropping empty section \examples
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.8
Check: R code for possible problems
Result: NOTE
    .Rsquared: no visible global function definition for ‘poly’
    .alignment: no visible global function definition for ‘lm’
    .alignment: no visible global function definition for ‘as.formula’
    .biweight.FTICRMS: no visible global function definition for ‘median’
    .cluster.peaks: no visible global function definition for ‘lm’
    .cluster.peaks: no visible global function definition for ‘predict’
    .cluster.peaks: no visible global function definition for ‘median’
    baseline : <anonymous>: no visible global function definition for
     ‘qnorm’
    baseline: no visible global function definition for ‘median’
    baseline: no visible global function definition for ‘new’
    display.tests: no visible binding for global variable ‘parameter.list’
    display.tests: no visible binding for global variable ‘sigs’
    display.tests: no visible binding for global variable ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘parameter.list’
    run.analysis: no visible global function definition for ‘terms’
    run.analysis: no visible binding for global variable ‘t.test’
    run.analysis: no visible binding for global variable ‘lm’
    run.analysis : pval.fcn: no visible binding for global variable ‘pf’
    run.analysis: no visible binding for global variable ‘centers’
    run.baselines: no visible global function definition for ‘read.csv’
    run.baselines: no visible global function definition for ‘read.table’
    run.cluster.matrix: no visible binding for global variable ‘amps’
    run.cluster.matrix: no visible global function definition for ‘median’
    run.cluster.matrix: no visible global function definition for ‘predict’
    run.cluster.matrix: no visible global function definition for ‘lm’
    run.cluster.matrix: no visible binding for global variable
     ‘clust.constant’
    run.cluster.matrix: no visible binding for global variable ‘spect.base’
    run.lrg.peaks: no visible binding for global variable ‘spect.base’
    run.lrg.peaks: no visible global function definition for ‘approx’
    run.strong.peaks: no visible global function definition for ‘median’
    run.strong.peaks: no visible global function definition for ‘predict’
    run.strong.peaks: no visible global function definition for ‘cor’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 0.8
Check: R code for possible problems
Result: NOTE
    .alignment: warning in lm(Y ~ X, dat = fr): partial argument match of
     'dat' to 'data'
    .alignment: warning in lm(as.formula(form), dat = fr): partial argument
     match of 'dat' to 'data'
    display.tests: no visible binding for global variable ‘parameter.list’
    display.tests: no visible binding for global variable ‘sigs’
    display.tests: no visible binding for global variable ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘parameter.list’
    run.analysis: no visible binding for global variable ‘centers’
    run.cluster.matrix: no visible binding for global variable ‘amps’
    run.cluster.matrix: no visible binding for global variable
     ‘clust.constant’
    run.cluster.matrix: no visible binding for global variable ‘spect.base’
    run.lrg.peaks: no visible binding for global variable ‘spect.base’
Flavors: r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64