CRAN Package Check Results for Package FTICRMS

Last updated on 2015-09-04 11:47:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.8 2.51 30.99 33.50 NOTE
r-devel-linux-x86_64-debian-gcc 0.8 2.64 30.34 32.99 NOTE
r-devel-linux-x86_64-fedora-clang 0.8 71.24 NOTE
r-devel-linux-x86_64-fedora-gcc 0.8 68.81 NOTE
r-devel-osx-x86_64-clang 0.8 59.54 NOTE
r-devel-windows-ix86+x86_64 0.8 7.00 55.00 62.00 NOTE
r-patched-linux-x86_64 0.8 2.76 33.28 36.04 NOTE
r-patched-solaris-sparc 0.8 451.80 NOTE
r-patched-solaris-x86 0.8 101.10 NOTE
r-release-linux-x86_64 0.8 2.76 33.04 35.81 NOTE
r-release-osx-x86_64-mavericks 0.8 NOTE
r-release-windows-ix86+x86_64 0.8 11.00 53.00 64.00 NOTE
r-oldrel-windows-ix86+x86_64 0.8 10.00 66.00 76.00 NOTE

Check Details

Version: 0.8
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘Matrix’ ‘splines’
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.8
Check: R code for possible problems
Result: NOTE
    .Rsquared: no visible global function definition for ‘poly’
    .alignment: no visible global function definition for ‘lm’
    .alignment: no visible global function definition for ‘as.formula’
    .biweight.FTICRMS: no visible global function definition for ‘median’
    .cluster.peaks: no visible global function definition for ‘lm’
    .cluster.peaks: no visible global function definition for ‘predict’
    .cluster.peaks: no visible global function definition for ‘median’
    baseline : <anonymous>: no visible global function definition for
     ‘qnorm’
    baseline: no visible global function definition for ‘median’
    baseline: no visible global function definition for ‘new’
    display.tests: no visible binding for global variable ‘parameter.list’
    display.tests: no visible binding for global variable ‘sigs’
    display.tests: no visible binding for global variable ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘parameter.list’
    run.analysis: no visible global function definition for ‘terms’
    run.analysis: no visible binding for global variable ‘t.test’
    run.analysis: no visible binding for global variable ‘lm’
    run.analysis : pval.fcn: no visible binding for global variable ‘pf’
    run.analysis: no visible binding for global variable ‘centers’
    run.baselines: no visible global function definition for ‘read.csv’
    run.baselines: no visible global function definition for ‘read.table’
    run.cluster.matrix: no visible binding for global variable ‘amps’
    run.cluster.matrix: no visible global function definition for ‘median’
    run.cluster.matrix: no visible global function definition for ‘predict’
    run.cluster.matrix: no visible global function definition for ‘lm’
    run.cluster.matrix: no visible binding for global variable
     ‘clust.constant’
    run.cluster.matrix: no visible binding for global variable ‘spect.base’
    run.lrg.peaks: no visible binding for global variable ‘spect.base’
    run.lrg.peaks: no visible global function definition for ‘approx’
    run.strong.peaks: no visible global function definition for ‘median’
    run.strong.peaks: no visible global function definition for ‘predict’
    run.strong.peaks: no visible global function definition for ‘cor’
    Undefined global functions or variables:
     amps approx as.formula centers clust.constant clust.mat cor lm median
     new parameter.list pf poly predict qnorm read.csv read.table sigs
     spect.base t.test terms
    Consider adding
     importFrom("methods", "new")
     importFrom("stats", "approx", "as.formula", "cor", "lm", "median",
     "pf", "poly", "predict", "qnorm", "t.test", "terms")
     importFrom("utils", "read.csv", "read.table")
    to your NAMESPACE (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.8
Check: Rd files
Result: NOTE
    prepare_Rd: baseline.Rd:123: Dropping empty section \examples
    prepare_Rd: display.tests.Rd:43: Dropping empty section \references
    prepare_Rd: display.tests.Rd:57: Dropping empty section \examples
    prepare_Rd: extract.pars.Rd:114: Dropping empty section \examples
    prepare_Rd: locate.peaks.Rd:72: Dropping empty section \examples
    prepare_Rd: make.par.file.Rd:117: Dropping empty section \examples
    prepare_Rd: run.all.Rd:76: Dropping empty section \examples
    prepare_Rd: run.analysis.Rd:153: Dropping empty section \examples
    prepare_Rd: run.baselines.Rd:91: Dropping empty section \examples
    prepare_Rd: run.cluster.matrix.Rd:171: Dropping empty section \examples
    prepare_Rd: run.lrg.peaks.Rd:95: Dropping empty section \examples
    prepare_Rd: run.peaks.Rd:99: Dropping empty section \examples
    prepare_Rd: run.strong.peaks.Rd:115: Dropping empty section \examples
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.8
Check: R code for possible problems
Result: NOTE
    .alignment: warning in lm(Y ~ X, dat = fr): partial argument match of
     'dat' to 'data'
    .alignment: warning in lm(as.formula(form), dat = fr): partial argument
     match of 'dat' to 'data'
    display.tests: no visible binding for global variable ‘parameter.list’
    display.tests: no visible binding for global variable ‘sigs’
    display.tests: no visible binding for global variable ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘parameter.list’
    run.analysis: no visible binding for global variable ‘centers’
    run.cluster.matrix: no visible binding for global variable ‘amps’
    run.cluster.matrix: no visible binding for global variable
     ‘clust.constant’
    run.cluster.matrix: no visible binding for global variable ‘spect.base’
    run.lrg.peaks: no visible binding for global variable ‘spect.base’
    Undefined global functions or variables:
     amps centers clust.constant clust.mat parameter.list sigs spect.base
Flavor: r-devel-osx-x86_64-clang

Version: 0.8
Check: R code for possible problems
Result: NOTE
    .alignment: warning in lm(Y ~ X, dat = fr): partial argument match of
     ‘dat’ to ‘data’
    .alignment: warning in lm(as.formula(form), dat = fr): partial argument
     match of ‘dat’ to ‘data’
    display.tests: no visible binding for global variable ‘parameter.list’
    display.tests: no visible binding for global variable ‘sigs’
    display.tests: no visible binding for global variable ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘clust.mat’
    display.tests : <anonymous>: no visible binding for global variable
     ‘parameter.list’
    run.analysis: no visible binding for global variable ‘centers’
    run.cluster.matrix: no visible binding for global variable ‘amps’
    run.cluster.matrix: no visible binding for global variable
     ‘clust.constant’
    run.cluster.matrix: no visible binding for global variable ‘spect.base’
    run.lrg.peaks: no visible binding for global variable ‘spect.base’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64