CRAN Package Check Results for Package FunCluster

Last updated on 2015-05-26 04:46:57.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.09 20.37 35.51 55.88 NOTE
r-devel-linux-x86_64-debian-gcc 1.09 20.33 35.28 55.60 NOTE
r-devel-linux-x86_64-fedora-clang 1.09 111.09 NOTE
r-devel-linux-x86_64-fedora-gcc 1.09 107.22 NOTE
r-devel-osx-x86_64-clang 1.09 93.95 NOTE
r-devel-windows-ix86+x86_64 1.09 39.00 52.00 91.00 NOTE
r-patched-linux-x86_64 1.09 20.72 35.01 55.73 NOTE
r-patched-solaris-sparc 1.09 750.50 NOTE
r-patched-solaris-x86 1.09 179.50 NOTE
r-release-linux-x86_64 1.09 20.21 34.75 54.96 NOTE
r-release-osx-x86_64-mavericks 1.09 NOTE
r-release-osx-x86_64-snowleopard 1.09 ERROR
r-release-windows-ix86+x86_64 1.09 37.00 55.00 92.00 NOTE
r-oldrel-windows-ix86+x86_64 1.09 38.00 83.00 121.00 NOTE

Check Details

Version: 1.09
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘copying’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.09
Check: R code for possible problems
Result: NOTE
    NB: .First.lib is obsolete and will not be used in R >= 3.0.0
    File ‘FunCluster/R/FunCluster.R’:
     .First.lib calls:
     cat(paste("\nThis is FunCluster package version ", f.version, " maintained by Corneliu Henegar.\n\n", "FunCluster(wd='', org='HS', go.direct=FALSE, clusterm='cc', compare='common.correl.genes',\n", "\tcorr.met='greedy', corr.th=0.85, two.lists=TRUE, restrict=FALSE, alpha=0.05,\n", "\tlocation=FALSE, details=FALSE)\n\n", sep = ""))
    
    Package startup functions should use ‘packageStartupMessage’ to
     generate messages.
    See section ‘Good practice’ in '?.onAttach'.
    
    MiseEnFormeKegg: warning in gl(1, NbKmap, label = LL): partial argument
     match of ‘label’ to ‘labels’
    MiseEnFormeKeggSC: warning in gl(1, NbKmap, label = LL): partial
     argument match of ‘label’ to ‘labels’
    prop.alt: warning in matrix(seq(from = adjustment.args$edf.lower, by =
     stepsize, len = adjustment.args$num.steps), nr =
     adjustment.args$num.steps, nc = 1): partial argument match of ‘nr’ to
     ‘nrow’
    prop.alt: warning in matrix(seq(from = adjustment.args$edf.lower, by =
     stepsize, len = adjustment.args$num.steps), nr =
     adjustment.args$num.steps, nc = 1): partial argument match of ‘nc’ to
     ‘ncol’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.09
Check: package dependencies
Result: ERROR
    Package required but not available: ‘Hmisc’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard