CRAN Package Check Results for Package GAMBoost

Last updated on 2015-07-04 14:50:16.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2-3 2.84 34.73 37.57 NOTE
r-devel-linux-x86_64-debian-gcc 1.2-3 2.89 34.14 37.03 NOTE
r-devel-linux-x86_64-fedora-clang 1.2-3 77.63 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2-3 72.55 NOTE
r-devel-osx-x86_64-clang 1.2-3 62.13 NOTE
r-devel-windows-ix86+x86_64 1.2-3 18.00 70.00 88.00 NOTE
r-patched-linux-x86_64 1.2-3 2.83 35.15 37.98 NOTE
r-patched-solaris-sparc 1.2-3 498.00 NOTE
r-patched-solaris-x86 1.2-3 109.50 NOTE
r-release-linux-x86_64 1.2-3 2.85 35.23 38.08 NOTE
r-release-osx-x86_64-mavericks 1.2-3 NOTE
r-release-windows-ix86+x86_64 1.2-3 14.00 73.00 87.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2-3 12.00 123.00 135.00 NOTE

Check Details

Version: 1.2-3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.2-3
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘changeLog’ ‘gnugpl2.txt’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2-3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘parallel’ ‘snowfall’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Package in Depends field not imported from: ‘Matrix’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2-3
Check: foreign function calls
Result: NOTE
    Calls with DUP:
     .C("get_min_score_dev_binary_index", x.linear, as.integer(length(y)),
     as.integer(componentwise.no), as.integer(nrow(x.linear)),
     subset.index, linpen.index, as.double(y), as.double(actual.mu),
     as.double(actual.eta), as.double(D), as.double(weights),
     double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]),
     double(componentwise.no), index = integer(1), score = double(componentwise.no),
     dev = double(1), DUP = FALSE)
     .C("calc_dev_binary_index", x.linear, as.integer(length(y)),
     as.integer(componentwise.no), as.integer(nrow(x.linear)),
     subset.index, linpen.index, as.double(y), as.double(actual.mu),
     as.double(actual.eta), as.double(D), as.double(weights),
     double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]),
     double(componentwise.no), double(componentwise.no), res = double(componentwise.no),
     DUP = FALSE)
     .C("pre_sum_index", x.linear, as.integer(length(D)), as.integer(componentwise.no),
     as.integer(nrow(x.linear)), subset.index, linpen.index, as.double(D),
     as.double(weights), res = double(componentwise.no), DUP = FALSE)
     .C("get_min_score_dev_gaussian_index", x.linear, as.integer(length(y)),
     as.integer(componentwise.no), as.integer(nrow(x.linear)),
     subset.index, linpen.index, as.double(y), as.double(actual.mu),
     as.double(actual.eta), as.double(D), as.double(weights),
     double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]),
     pre.sum, index = integer(1), score = double(componentwise.no),
     dev = double(1), DUP = FALSE)
     .C("get_min_score_dev_general_index", x.linear, as.integer(length(y)),
     as.integer(componentwise.no), as.integer(nrow(x.linear)),
     subset.index, linpen.index, as.double(y), as.double(actual.mu),
     as.double(actual.eta), as.double(D), as.double(weights),
     double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]),
     double(componentwise.no), index = integer(1), score = double(componentwise.no),
     beta.delta = double(1), DUP = FALSE)
    DUP is no longer supported and will be ignored.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.2-3
Check: R code for possible problems
Result: NOTE
    GAMBoost: Error while checking: invalid ‘envir’ argument
    calc.confidence.bands: no visible global function definition for
     ‘predict’
    cv.GAMBoost: Error while checking: invalid ‘envir’ argument
    estimPVal: no visible global function definition for ‘mclapply’
    plot.GAMBoost: no visible global function definition for ‘plot’
    plot.GAMBoost: no visible global function definition for ‘lines’
    Undefined global functions or variables:
     lines mclapply plot predict
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2-3
Check: R code for possible problems
Result: NOTE
    GAMBoost: no visible global function definition for ‘Matrix’
    cv.GAMBoost: no visible global function definition for ‘mclapply’
    estimPVal: no visible global function definition for ‘mclapply’
    Undefined global functions or variables:
     Matrix mclapply
Flavor: r-devel-osx-x86_64-clang

Version: 1.2-3
Check: R code for possible problems
Result: NOTE
    GAMBoost: no visible global function definition for 'binomial'
    GAMBoost: no visible global function definition for 'gaussian'
    GAMBoost: no visible global function definition for 'poisson'
    GAMBoost: no visible binding for global variable 'sd'
    GAMBoost: no visible global function definition for 'Matrix'
    calc.confidence.bands: no visible global function definition for
     'predict'
    cv.GAMBoost: no visible global function definition for 'binomial'
    cv.GAMBoost : eval.fold: no visible global function definition for
     'predict'
    cv.GAMBoost: no visible global function definition for 'mclapply'
    cv.GAMBoost: no visible binding for global variable 'var'
    estimPVal: no visible global function definition for 'mclapply'
    plot.GAMBoost: no visible global function definition for 'plot'
    plot.GAMBoost: no visible global function definition for 'lines'
    Undefined global functions or variables:
     Matrix binomial gaussian lines mclapply plot poisson predict sd var
Flavor: r-devel-windows-ix86+x86_64

Version: 1.2-3
Check: R code for possible problems
Result: NOTE
    GAMBoost: no visible global function definition for ‘Matrix’
    cv.GAMBoost: no visible global function definition for ‘mclapply’
    estimPVal: no visible global function definition for ‘mclapply’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2-3
Check: foreign function calls
Result: NOTE
    Calls with DUP != TRUE:
     .C("get_min_score_dev_binary_index", x.linear, as.integer(length(y)),
     as.integer(componentwise.no), as.integer(nrow(x.linear)),
     subset.index, linpen.index, as.double(y), as.double(actual.mu),
     as.double(actual.eta), as.double(D), as.double(weights),
     double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]),
     double(componentwise.no), index = integer(1), score = double(componentwise.no),
     dev = double(1), DUP = FALSE)
     .C("calc_dev_binary_index", x.linear, as.integer(length(y)),
     as.integer(componentwise.no), as.integer(nrow(x.linear)),
     subset.index, linpen.index, as.double(y), as.double(actual.mu),
     as.double(actual.eta), as.double(D), as.double(weights),
     double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]),
     double(componentwise.no), double(componentwise.no), res = double(componentwise.no),
     DUP = FALSE)
     .C("pre_sum_index", x.linear, as.integer(length(D)), as.integer(componentwise.no),
     as.integer(nrow(x.linear)), subset.index, linpen.index, as.double(D),
     as.double(weights), res = double(componentwise.no), DUP = FALSE)
     .C("get_min_score_dev_gaussian_index", x.linear, as.integer(length(y)),
     as.integer(componentwise.no), as.integer(nrow(x.linear)),
     subset.index, linpen.index, as.double(y), as.double(actual.mu),
     as.double(actual.eta), as.double(D), as.double(weights),
     double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]),
     pre.sum, index = integer(1), score = double(componentwise.no),
     dev = double(1), DUP = FALSE)
     .C("get_min_score_dev_general_index", x.linear, as.integer(length(y)),
     as.integer(componentwise.no), as.integer(nrow(x.linear)),
     subset.index, linpen.index, as.double(y), as.double(actual.mu),
     as.double(actual.eta), as.double(D), as.double(weights),
     double(length(y)), as.double(fstruct$penalty.linear[linear.is.penalized]),
     double(componentwise.no), index = integer(1), score = double(componentwise.no),
     beta.delta = double(1), DUP = FALSE)
    DUP = FALSE is deprecated and will be disabled in future versions of R.
Flavor: r-oldrel-windows-ix86+x86_64