CRAN Package Check Results for Package GENEAread

Last updated on 2015-08-30 23:47:42.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.1 2.13 24.50 26.63 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.1 1.84 24.16 26.00 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.1 52.28 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.1 48.35 NOTE
r-devel-osx-x86_64-clang 1.1.1 43.16 NOTE
r-devel-windows-ix86+x86_64 1.1.1 7.00 49.00 56.00 NOTE
r-patched-linux-x86_64 1.1.1 1.91 24.61 26.52 NOTE
r-patched-solaris-sparc 1.1.1 351.60 NOTE
r-patched-solaris-x86 1.1.1 67.80 NOTE
r-release-linux-x86_64 1.1.1 1.98 24.92 26.90 NOTE
r-release-osx-x86_64-mavericks 1.1.1 NOTE
r-release-windows-ix86+x86_64 1.1.1 7.00 43.00 50.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.1 9.00 67.00 76.00 NOTE

Check Details

Version: 1.1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘mmap’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     format.GRtime plot.AccData print.VirtAccData
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1.1
Check: R code for possible problems
Result: NOTE
    expand: no visible global function definition for ‘tail’
    header.info: no visible global function definition for ‘mmap’
    header.info: no visible global function definition for ‘char’
    header.info: no visible global function definition for ‘is.mmap’
    header.info: no visible global function definition for ‘munmap’
    plot.stft: no visible global function definition for ‘gray’
    plot.stft: no visible global function definition for ‘layout’
    plot.stft: no visible global function definition for ‘lines’
    plot.stft: no visible global function definition for ‘abline’
    plot.stft: no visible global function definition for ‘tail’
    plot.stft: no visible global function definition for ‘col2rgb’
    plot.stft: no visible global function definition for ‘palette’
    plot.stft: no visible global function definition for ‘rgb’
    plot.stft: no visible global function definition for ‘points’
    plot.stft: no visible global function definition for ‘image’
    print.AccData: no visible global function definition for ‘object.size’
    print.AccData: no visible global function definition for ‘tail’
    print.VirtAccData: no visible global function definition for ‘tail’
    print.stft: no visible global function definition for ‘tail’
    pseudolines: no visible global function definition for ‘points’
    pseudolines: no visible global function definition for ‘lines’
    read.bin: no visible global function definition for ‘mmap’
    read.bin: no visible global function definition for ‘char’
    read.bin: no visible global function definition for ‘is.mmap’
    read.bin: no visible global function definition for ‘munmap’
    read.bin: no visible global function definition for ‘uint8’
    read.bin: no visible global function definition for ‘txtProgressBar’
    read.bin: no visible global function definition for ‘tail’
    read.bin: no visible global function definition for ‘setTxtProgressBar’
    read.bin: no visible global function definition for ‘object.size’
    shift: no visible global function definition for ‘tail’
    stftcalc: no visible global function definition for ‘txtProgressBar’
    stftcalc: no visible global function definition for ‘setTxtProgressBar’
    Undefined global functions or variables:
     abline char col2rgb gray image is.mmap layout lines mmap munmap
     object.size palette points rgb setTxtProgressBar tail txtProgressBar
     uint8
    Consider adding
     importFrom("grDevices", "col2rgb", "gray", "palette", "rgb")
     importFrom("graphics", "abline", "image", "layout", "lines", "points")
     importFrom("utils", "object.size", "setTxtProgressBar", "tail",
     "txtProgressBar")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1.1
Check: Rd line widths
Result: NOTE
    Rd file 'AccData.Rd':
     \usage lines wider than 90 characters:
     plot(x, y=NULL, what = c("sd", "mean", "temperature", "light", "voltage"),draw = TRUE, resolution = 200,...)
    
    Rd file 'get.intervals.Rd':
     \usage lines wider than 90 characters:
     get.intervals(x, start=0, end = 1, length = NULL, time.format = c("auto", "seconds", "days", "proportion", "measurements", "time"), inc ... [TRUNCATED]
     \examples lines wider than 100 characters:
     lines(get.intervals(procfile, start = 0.4, end = 0.5, time.format = "prop", incl.date = TRUE)[,1:2], col=2)
     lines(get.intervals(procfile, start = 0.4, end = 5, time.format = "sec", incl.date = TRUE)[,1:2], col=3)
     lines(get.intervals(procfile, start = "16:51", end = "16:52", time.format = "time", incl.date = TRUE)[,1:2], col=4)
     #Note that measurements will depend on the downsampling rate, not the original sampling rate of the data
     lines(get.intervals(procfile, start = 100, length = 10, time.format = "measurement", incl.date = TRUE)[,1:2], col=5)
     points(get.intervals(virtfile, start = "16:52:10", "16:52:40", incl.date = TRUE)[,1:2], col=4, pch = ".")
     lines(get.intervals(procfile, start = "16:49:00", "16:49:30", incl.date = TRUE, read.from.file = TRUE, downsample = 300)[,1:2], col=2) ... [TRUNCATED]
    
    Rd file 'header.info.Rd':
     \examples lines wider than 100 characters:
     fileheader <- header.info(system.file("binfile/TESTfile.bin", package = "GENEAread")[1], more = TRUE)
    
    Rd file 'plot.stft.Rd':
     \usage lines wider than 90 characters:
     plot(x, mode = c("decibels", "modulus", "pval"), log = "", showmax = TRUE, median = FALSE, xaxis = TRUE, topthresh, reassign = (!(is.nu ... [TRUNCATED]
    
    Rd file 'read.bin.Rd':
     \usage lines wider than 90 characters:
     verbose = TRUE, do.temp = TRUE,do.volt = TRUE, calibrate = TRUE, downsample = NULL, blocksize , virtual = FALSE, mmap.load = (.Mach ... [TRUNCATED]
    
    Rd file 'stft.Rd':
     \examples lines wider than 100 characters:
     stft(signal + sin( cumsum(seq(f2, f1, length = 5000))*2*pi), plot = TRUE, reassign = TRUE, win = 100)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.1
Check: R code for possible problems
Result: NOTE
    header.info: no visible global function definition for ‘mmap’
    header.info: no visible global function definition for ‘char’
    header.info: no visible global function definition for ‘is.mmap’
    header.info: no visible global function definition for ‘munmap’
    read.bin: no visible global function definition for ‘mmap’
    read.bin: no visible global function definition for ‘char’
    read.bin: no visible global function definition for ‘is.mmap’
    read.bin: no visible global function definition for ‘munmap’
    read.bin: no visible global function definition for ‘uint8’
    Undefined global functions or variables:
     char is.mmap mmap munmap uint8
Flavor: r-devel-osx-x86_64-clang

Version: 1.1.1
Check: R code for possible problems
Result: NOTE
    header.info: no visible global function definition for ‘mmap’
    header.info: no visible global function definition for ‘char’
    header.info: no visible global function definition for ‘is.mmap’
    header.info: no visible global function definition for ‘munmap’
    read.bin: no visible global function definition for ‘mmap’
    read.bin: no visible global function definition for ‘char’
    read.bin: no visible global function definition for ‘is.mmap’
    read.bin: no visible global function definition for ‘munmap’
    read.bin: no visible global function definition for ‘uint8’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64