CRAN Package Check Results for Package GESTr

Last updated on 2015-07-31 23:47:44.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1 0.64 14.98 15.62 NOTE
r-devel-linux-x86_64-debian-gcc 0.1 0.92 14.44 15.36 NOTE
r-devel-linux-x86_64-fedora-clang 0.1 29.86 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1 28.59 NOTE
r-devel-osx-x86_64-clang 0.1 26.37 OK
r-devel-windows-ix86+x86_64 0.1 6.00 44.00 50.00 NOTE
r-patched-linux-x86_64 0.1 0.66 14.82 15.48 NOTE
r-patched-solaris-sparc 0.1 202.70 OK
r-patched-solaris-x86 0.1 43.00 OK
r-release-linux-x86_64 0.1 0.66 14.97 15.63 NOTE
r-release-osx-x86_64-mavericks 0.1 OK
r-release-windows-ix86+x86_64 0.1 4.00 27.00 31.00 OK
r-oldrel-windows-ix86+x86_64 0.1 4.00 31.00 35.00 OK

Check Details

Version: 0.1
Check: R code for possible problems
Result: NOTE
    GESTr: no visible global function definition for ‘rnorm’
    GESTr: no visible global function definition for ‘sd’
    GESTr : <anonymous>: no visible global function definition for ‘pnorm’
    TranSAM : magChange: no visible global function definition for ‘median’
    TranSAM : dstat: no visible global function definition for ‘sd’
    TranSAM: no visible binding for global variable ‘sd’
    TranSAM: no visible global function definition for ‘quantile’
    findReplicateGroups: no visible global function definition for ‘qnorm’
    findReplicateGroups: no visible global function definition for ‘sd’
    fitGMM : simulateData: no visible global function definition for
     ‘rnorm’
    fitGMM : simulateData: no visible global function definition for ‘sd’
    fitGMM: no visible global function definition for ‘median’
    fitGMM: no visible global function definition for ‘ks.test’
    fitRockeDurbin: no visible global function definition for ‘dist’
    fitRockeDurbin : findLowGenes: no visible global function definition
     for ‘median’
    fitRockeDurbin : findLowGenes: no visible global function definition
     for ‘mad’
    fitRockeDurbin: no visible binding for global variable ‘sd’
    getMonotonicConfidences_multiclass: no visible global function
     definition for ‘pnorm’
    getMonotonicConfidences_multiclass: no visible global function
     definition for ‘sd’
    Undefined global functions or variables:
     dist ks.test mad median pnorm qnorm quantile rnorm sd
    Consider adding
     importFrom("stats", "dist", "ks.test", "mad", "median", "pnorm",
     "qnorm", "quantile", "rnorm", "sd")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.1
Check: Rd line widths
Result: NOTE
    Rd file 'TranSAM.Rd':
     \usage lines wider than 90 characters:
     TranSAM(x,samples1,samples2,minChange=0.2,var_filter=0.01,maxFDR=1,changeStep=0.1,scoreFun="magChange")
     \examples lines wider than 100 characters:
     selected.columns <- sort(c(sample(1:ncol(ABIdata),30),which(colnames(ABIdata) %in% c("GSM194513","GSM194514","GSM194515","GSM194516","G ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64