CRAN Package Check Results for Package GLMMcosinor

Last updated on 2024-09-12 13:48:23 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.0 6.76 168.61 175.37 OK
r-devel-linux-x86_64-debian-gcc 0.2.0 4.46 125.57 130.03 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.0 277.82 OK
r-devel-linux-x86_64-fedora-gcc 0.2.0 289.12 OK
r-devel-windows-x86_64 0.2.0 9.00 182.00 191.00 OK
r-patched-linux-x86_64 0.2.0 6.56 161.15 167.71 OK
r-release-linux-x86_64 0.2.0 6.38 151.98 158.36 ERROR
r-release-macos-arm64 0.2.0 91.00 OK
r-release-macos-x86_64 0.2.0 162.00 OK
r-release-windows-x86_64 0.2.0 9.00 179.00 188.00 OK
r-oldrel-macos-arm64 0.2.0 96.00 OK
r-oldrel-macos-x86_64 0.2.0 209.00 OK
r-oldrel-windows-x86_64 0.2.0 10.00 218.00 228.00 OK

Check Details

Version: 0.2.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'flextable', 'ftExtra' Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘GLMMcosinor.Rmd’ using rmarkdown Quitting from lines 109-111 [unnamed-chunk-2] (GLMMcosinor.Rmd) Error: processing vignette 'GLMMcosinor.Rmd' failed with diagnostics: there is no package called 'flextable' --- failed re-building ‘GLMMcosinor.Rmd’ --- re-building ‘data-simulations.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/data-simulations_files/figure-html/unnamed-chunk-5-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31422 bytes Input file size = 31536 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29349 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29349 Output IDAT size = 29349 bytes (2073 bytes decrease) Output file size = 29427 bytes (2109 bytes = 6.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/data-simulations_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24546 bytes Input file size = 24648 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23118 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23118 Output IDAT size = 23118 bytes (1428 bytes decrease) Output file size = 23196 bytes (1452 bytes = 5.89% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/data-simulations_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36941 bytes Input file size = 37067 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36487 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 36215 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 36215 Output IDAT size = 36215 bytes (726 bytes decrease) Output file size = 36293 bytes (774 bytes = 2.09% decrease) --- finished re-building ‘data-simulations.Rmd’ --- re-building ‘mixed-models.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/mixed-models_files/figure-html/unnamed-chunk-4-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44321 bytes Input file size = 44459 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39991 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39991 Output IDAT size = 39991 bytes (4330 bytes decrease) Output file size = 40069 bytes (4390 bytes = 9.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/mixed-models_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 21361 bytes Input file size = 22243 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20700 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20700 Output IDAT size = 20700 bytes (661 bytes decrease) Output file size = 20778 bytes (1465 bytes = 6.59% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/mixed-models_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44693 bytes Input file size = 44831 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39984 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39984 Output IDAT size = 39984 bytes (4709 bytes decrease) Output file size = 40062 bytes (4769 bytes = 10.64% decrease) --- finished re-building ‘mixed-models.Rmd’ --- re-building ‘model-specification.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-specification_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12255 bytes Input file size = 13125 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11188 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11188 Output IDAT size = 11188 bytes (1067 bytes decrease) Output file size = 11266 bytes (1859 bytes = 14.16% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-specification_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22779 bytes Input file size = 22881 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20912 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20912 Output IDAT size = 20912 bytes (1867 bytes decrease) Output file size = 20990 bytes (1891 bytes = 8.26% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-specification_files/figure-html/unnamed-chunk-10-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22345 bytes Input file size = 22447 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20700 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20700 Output IDAT size = 20700 bytes (1645 bytes decrease) Output file size = 20778 bytes (1669 bytes = 7.44% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-specification_files/figure-html/unnamed-chunk-17-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56509 bytes Input file size = 56659 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40354 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40354 Output IDAT size = 40354 bytes (16155 bytes decrease) Output file size = 40432 bytes (16227 bytes = 28.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-specification_files/figure-html/unnamed-chunk-17-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21465 bytes Input file size = 21567 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17105 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17105 Output IDAT size = 17105 bytes (4360 bytes decrease) Output file size = 17183 bytes (4384 bytes = 20.33% decrease) --- finished re-building ‘model-specification.Rmd’ --- re-building ‘model-visualisations.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-3-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26401 bytes Input file size = 26515 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22901 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22901 Output IDAT size = 22901 bytes (3500 bytes decrease) Output file size = 22979 bytes (3536 bytes = 13.34% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-4-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32973 bytes Input file size = 33099 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29970 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29970 Output IDAT size = 29970 bytes (3003 bytes decrease) Output file size = 30048 bytes (3051 bytes = 9.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23993 bytes Input file size = 24095 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22573 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22573 Output IDAT size = 22573 bytes (1420 bytes decrease) Output file size = 22651 bytes (1444 bytes = 5.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21868 bytes Input file size = 21970 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 20998 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 20998 Output IDAT size = 20998 bytes (870 bytes decrease) Output file size = 21076 bytes (894 bytes = 4.07% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19161 bytes Input file size = 19263 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18435 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17914 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17914 Output IDAT size = 17914 bytes (1247 bytes decrease) Output file size = 17992 bytes (1271 bytes = 6.60% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18404 bytes Input file size = 18506 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14476 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14476 Output IDAT size = 14476 bytes (3928 bytes decrease) Output file size = 14554 bytes (3952 bytes = 21.36% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-11-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10279 bytes Input file size = 11149 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9657 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9437 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9357 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 9091 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 9091 Output IDAT size = 9091 bytes (1188 bytes decrease) Output file size = 9169 bytes (1980 bytes = 17.76% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-12-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24596 bytes Input file size = 24710 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17842 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17842 Output IDAT size = 17842 bytes (6754 bytes decrease) Output file size = 17920 bytes (6790 bytes = 27.48% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-13-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25064 bytes Input file size = 25178 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17947 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17947 Output IDAT size = 17947 bytes (7117 bytes decrease) Output file size = 18025 bytes (7153 bytes = 28.41% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-14-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27289 bytes Input file size = 27403 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20201 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20201 Output IDAT size = 20201 bytes (7088 bytes decrease) Output file size = 20279 bytes (7124 bytes = 26.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-15-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27913 bytes Input file size = 28027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19847 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19847 Output IDAT size = 19847 bytes (8066 bytes decrease) Output file size = 19925 bytes (8102 bytes = 28.91% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-16-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23217 bytes Input file size = 23319 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18106 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18106 Output IDAT size = 18106 bytes (5111 bytes decrease) Output file size = 18184 bytes (5135 bytes = 22.02% decrease) --- finished re-building ‘model-visualisations.Rmd’ --- re-building ‘multiple-components.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/multiple-components_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27012 bytes Input file size = 27126 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25712 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25712 Output IDAT size = 25712 bytes (1300 bytes decrease) Output file size = 25790 bytes (1336 bytes = 4.93% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/multiple-components_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33524 bytes Input file size = 33650 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 33078 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 32897 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 32897 Output IDAT size = 32897 bytes (627 bytes decrease) Output file size = 32975 bytes (675 bytes = 2.01% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/multiple-components_files/figure-html/unnamed-chunk-12-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24459 bytes Input file size = 24561 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24173 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 23919 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 23919 Output IDAT size = 23919 bytes (540 bytes decrease) Output file size = 23997 bytes (564 bytes = 2.30% decrease) --- finished re-building ‘multiple-components.Rmd’ SUMMARY: processing the following file failed: ‘GLMMcosinor.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘GLMMcosinor.Rmd’ using rmarkdown Quitting from lines 109-111 [unnamed-chunk-2] (GLMMcosinor.Rmd) Error: processing vignette 'GLMMcosinor.Rmd' failed with diagnostics: there is no package called 'flextable' --- failed re-building ‘GLMMcosinor.Rmd’ --- re-building ‘data-simulations.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/data-simulations_files/figure-html/unnamed-chunk-5-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32840 bytes Input file size = 32966 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30834 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30834 Output IDAT size = 30834 bytes (2006 bytes decrease) Output file size = 30912 bytes (2054 bytes = 6.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/data-simulations_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22798 bytes Input file size = 22900 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22354 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 21897 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 21897 Output IDAT size = 21897 bytes (901 bytes decrease) Output file size = 21975 bytes (925 bytes = 4.04% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/data-simulations_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34573 bytes Input file size = 34699 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34331 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 34021 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 33910 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 33910 Output IDAT size = 33910 bytes (663 bytes decrease) Output file size = 33988 bytes (711 bytes = 2.05% decrease) --- finished re-building ‘data-simulations.Rmd’ --- re-building ‘mixed-models.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/mixed-models_files/figure-html/unnamed-chunk-4-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44321 bytes Input file size = 44459 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39991 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39991 Output IDAT size = 39991 bytes (4330 bytes decrease) Output file size = 40069 bytes (4390 bytes = 9.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/mixed-models_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 21361 bytes Input file size = 22243 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20700 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20700 Output IDAT size = 20700 bytes (661 bytes decrease) Output file size = 20778 bytes (1465 bytes = 6.59% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/mixed-models_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44693 bytes Input file size = 44831 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39984 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39984 Output IDAT size = 39984 bytes (4709 bytes decrease) Output file size = 40062 bytes (4769 bytes = 10.64% decrease) --- finished re-building ‘mixed-models.Rmd’ --- re-building ‘model-specification.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-specification_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12255 bytes Input file size = 13125 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11188 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11188 Output IDAT size = 11188 bytes (1067 bytes decrease) Output file size = 11266 bytes (1859 bytes = 14.16% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-specification_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22779 bytes Input file size = 22881 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20912 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20912 Output IDAT size = 20912 bytes (1867 bytes decrease) Output file size = 20990 bytes (1891 bytes = 8.26% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-specification_files/figure-html/unnamed-chunk-10-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22345 bytes Input file size = 22447 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20700 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20700 Output IDAT size = 20700 bytes (1645 bytes decrease) Output file size = 20778 bytes (1669 bytes = 7.44% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-specification_files/figure-html/unnamed-chunk-17-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56509 bytes Input file size = 56659 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40354 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40354 Output IDAT size = 40354 bytes (16155 bytes decrease) Output file size = 40432 bytes (16227 bytes = 28.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-specification_files/figure-html/unnamed-chunk-17-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21465 bytes Input file size = 21567 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17105 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17105 Output IDAT size = 17105 bytes (4360 bytes decrease) Output file size = 17183 bytes (4384 bytes = 20.33% decrease) --- finished re-building ‘model-specification.Rmd’ --- re-building ‘model-visualisations.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-3-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26401 bytes Input file size = 26515 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22901 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22901 Output IDAT size = 22901 bytes (3500 bytes decrease) Output file size = 22979 bytes (3536 bytes = 13.34% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-4-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32973 bytes Input file size = 33099 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29970 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29970 Output IDAT size = 29970 bytes (3003 bytes decrease) Output file size = 30048 bytes (3051 bytes = 9.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23708 bytes Input file size = 23810 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23241 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 22543 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 22543 Output IDAT size = 22543 bytes (1165 bytes decrease) Output file size = 22621 bytes (1189 bytes = 4.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23213 bytes Input file size = 23315 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22235 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 21910 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 21910 Output IDAT size = 21910 bytes (1303 bytes decrease) Output file size = 21988 bytes (1327 bytes = 5.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19263 bytes Input file size = 19365 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18582 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17889 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 17889 Output IDAT size = 17889 bytes (1374 bytes decrease) Output file size = 17967 bytes (1398 bytes = 7.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18354 bytes Input file size = 18456 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14637 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14637 Output IDAT size = 14637 bytes (3717 bytes decrease) Output file size = 14715 bytes (3741 bytes = 20.27% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-11-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 10279 bytes Input file size = 11149 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9657 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 9437 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9357 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 9091 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 9091 Output IDAT size = 9091 bytes (1188 bytes decrease) Output file size = 9169 bytes (1980 bytes = 17.76% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-12-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24596 bytes Input file size = 24710 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17842 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17842 Output IDAT size = 17842 bytes (6754 bytes decrease) Output file size = 17920 bytes (6790 bytes = 27.48% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-13-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25064 bytes Input file size = 25178 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17947 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17947 Output IDAT size = 17947 bytes (7117 bytes decrease) Output file size = 18025 bytes (7153 bytes = 28.41% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-14-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27289 bytes Input file size = 27403 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20201 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20201 Output IDAT size = 20201 bytes (7088 bytes decrease) Output file size = 20279 bytes (7124 bytes = 26.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-15-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27913 bytes Input file size = 28027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19847 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19847 Output IDAT size = 19847 bytes (8066 bytes decrease) Output file size = 19925 bytes (8102 bytes = 28.91% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/model-visualisations_files/figure-html/unnamed-chunk-16-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23217 bytes Input file size = 23319 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18106 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18106 Output IDAT size = 18106 bytes (5111 bytes decrease) Output file size = 18184 bytes (5135 bytes = 22.02% decrease) --- finished re-building ‘model-visualisations.Rmd’ --- re-building ‘multiple-components.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/multiple-components_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27012 bytes Input file size = 27126 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25712 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25712 Output IDAT size = 25712 bytes (1300 bytes decrease) Output file size = 25790 bytes (1336 bytes = 4.93% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/multiple-components_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33524 bytes Input file size = 33650 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 33078 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 32897 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 32897 Output IDAT size = 32897 bytes (627 bytes decrease) Output file size = 32975 bytes (675 bytes = 2.01% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/GLMMcosinor.Rcheck/vign_test/GLMMcosinor/vignettes/multiple-components_files/figure-html/unnamed-chunk-12-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24459 bytes Input file size = 24561 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24173 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 23919 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 23919 Output IDAT size = 23919 bytes (540 bytes decrease) Output file size = 23997 bytes (564 bytes = 2.30% decrease) --- finished re-building ‘multiple-components.Rmd’ SUMMARY: processing the following file failed: ‘GLMMcosinor.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64